• 제목/요약/키워드: Tertiary structure

검색결과 232건 처리시간 0.023초

Structure of CT26 in the C-terminal of Amyloid Precursor Protein Studied by NMR Spectroscopy

  • Kang, Dong-Il;Baek, Dong-Ha;Shin, Song-Yub;Kim, Yang-Mee
    • Bulletin of the Korean Chemical Society
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    • 제26권8호
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    • pp.1225-1228
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    • 2005
  • C-terminal fragments of APP (APP-CTs), that contain A$\beta$ sequence, are found in neurotic plaques, neurofibrillary tangles and the cytosol of lymphoblastoid cells obtained from AD patients. CT26, Thr639-Asp664 (TVIVITLVMLKKKQYTSIHH GVVEVD) includes not only the transmembrane domain but also the cytoplasmic domain of APP. This sequence is produced from cleavage of APP by caspase and $\gamma$-secretase. In this study, the solution structure of CT26 was investigated using NMR spectroscopy and circular dichroism (CD) spectropolarimeter in various membrane-mimicking environments. According to CD spectra and the tertiary structure of CT26 determined in TFE-containing aqueous solution, CT26 has an α-helical structure from $Val^{2}\;to\;Lys^{11}$ in TFE-containing aqueous solution. However, according to CD data, CT26 adopts a $\beta$-sheet structure in the SDS micelles and DPC micelles. This result implies that CT26 may have a conformational transition between $\alpha$-helix and $\beta$-sheet structure. This study may provide an insight into the conformational basis of the pathological activity of the C-terminal fragments of APP in the model membrane.

Economic Performance: Leading Sector, Economic Structure and Competitiveness of Export Commodities

  • WIJAYA, Adi;ILMI, Zainal;DARMA, Dio Caisar
    • Asian Journal of Business Environment
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    • 제10권3호
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    • pp.23-33
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    • 2020
  • Purpose: The purpose of this study is for the leading sector, a pattern of shifting structure of the economic sector, and community export competitiveness on the economy Malinau Regency. Research design, data, and methodology: The type of data used is secondary data with a quantitative approach of 2009-2018. The study data used Location Quotient (LQ), Shift Share Analysis (SSA), and Revealed Comparative Advantage (RCA) analysis tools. Results: There are 6 leading sectors: agriculture; electricity, gas, and clean water; building and construction; trade, hotels, and restaurants. That has been classified has changed the economic structure of the Malinau Regency from the secondary sector to the tertiary and primary sectors in 10 years. While, community export competitiveness of the Malinau Regency through RCA Analysis, see if the export products of coal and excavation (types A, B, C) are shown to have a higher comparative advantage with comparative advantage. This shows that only a few commodities that can provide the good performance of export. Conclusions: Analysis of economic growth in the Malinau Regency after regional autonomy shows that there has been a shift in the economic structure of the economy which is dominated by the structure of the primary sector.

병원의 아웃소싱과 조직유효성의 관계에 관한 연구 (A Study on Relationship between Outsourcing and Organizational Effectiveness in Hospital)

  • 김영훈;오수진;김한성;김기훈;김효정
    • 한국병원경영학회지
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    • 제18권3호
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    • pp.83-105
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    • 2013
  • The purpose of this study is to make managerial information regarding outsourcing more concrete by identifying and evaluating how outsourcing as an useful strategic tool for hospitals influences organizational effectiveness. The survey was performed to 311 general hospitals and tertiary hospitals, and 63 questionnaires were recovered and analyzed. As the result of measuring organizational effectiveness after introduction of outsourcing, non-financial performance(3.34) was higher than financial performance(3.25) and satisfaction(3.08). According to the characteristics of organizational structure, financial performance showed statistically significant difference when categorizing the hospitals. It was higher in the general hospitals than in the tertiary hospitals. In addition, the hospitals that outsource the logistic and patient affairs parts have higher financial performances than non-financial ones. Especially, there was statistically significant difference depending on the sub-parts of the logistics, which means the hospitals outsourcing the logistic part have higher financial performance than the hospitals without outsourcing the logistics.

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Design of the Artificial Antenna System in Photosynthesis

  • Tamiaki, Hitoshi;Yagai, Shiki
    • Journal of Photoscience
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    • 제9권2호
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    • pp.66-69
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    • 2002
  • Zinc chlorin 1 possessing tertiary 3$^1$_hydroxy and 13$^1$-oxo groups was synthesized as a model for the antenna chlorophylls of photosynthetic green bacteria. Self-aggregation of 1 in nonpolar organic solvents was examined and compared to 2 and 3 possessing a secondary and primary 3$^1$_hydroxy group, respectively. Zinc chlorin 1 self-aggregated in I%(v/v) CH$_2$Cl$_2$-hexane to form oligomers and showed a red-shifted Qy maximum at 704 nm compared to the monomer (648 nm in CH$_2$CI2$_2$). This red-shift is larger than that of 3$^1$S-2 (648 to 697 nm) and comparable to that of3$^1$R-2 (648 to 705 nm), but smaller than that of 1 (648 to 740 nm), indicating that while a single 3$^1$-methyl group (primary to secondary OH) suppressed tight and/or extended aggregation, the additional 3$^1$-methyl group (secondary to tertiary OH) did not further suppress aggregation. The relative stability of the aggregates was in the order 3> 3$^1$R-2∼ 1 > 3$^1$S-2 as determined by visible spectral analyses. Molecular modeling calculations on oligomers of zinc chlorins 1, 3$^1$ R-2 and 3 gave similar well-ordered energy-minimized structures, while 3 stacked more tightly than 3$^1$ R- 2 and 1. In contrast, 3$^1$S-2 gave a relatively disordered (twisted) structure. The calculated oligomeric structures could explain the visible spectral data of 1-3 in nonpolar organic solvents. Moreover, self- aggregation of synthetic zinc 13$^1$_oxo-hlorins 4-6 possessing a 2-hydroxyethyl, 3-hydroxypropyl and 3- hydroxy-I-propenyl group at the 3-position in nonpolar organic solvents was discussed.

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9-Meric Peptide Analogs of Defensin-like Antimicrobial Peptide Coprisin with Potent Antibacterial Activities with Bacterial Sell Selectivites

  • Shin, Areum;Lee, Eunjung;Kim, Jin-Kyoung;Bang, Jeong-Kyu;Kim, Yangmee
    • Bulletin of the Korean Chemical Society
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    • 제35권9호
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    • pp.2809-2812
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    • 2014
  • The 43-residue defensin-like peptide coprisin, which is isolated from dung bettle, Copris tripartitus, is a potent antimicrobial peptide. In our previous work, we determined the tertiary structure of coprisin and found that alpha helical region of coprisin from residue 19 to residue 30 is important for its antimicrobial activities. Here, we designed cop12mer and cop9mer analogs of coprisin based on the tertiary structure of coprisin. To investigate the relationship between hydrophobicity and antimicrobial activities and develop the potent peptide antibiotics, we designed cop9mer-1 with substitution of $His^2$ with Trp in cop9mer. The results showed that cop9mer-1 has higher toxicities as well as improved antimicrobial activities compared to cop9mer. In order to reduce the toxicity of cop9mer-1, we designed cop9mer-2 and cop9mer-3 with substitution of $Cys^3$ with Lys or Ser. Substitution of $Cys^3$ with these hydrophilic amino acids results in lower cytotoxicities compared to cop9mer-1. Cop9mer-2 with substitution of $Cys^3$ with Lys in Cop9mer-1 showed high antibacterial activities against drug resistant bacteria without cytotoxicity. Antibiotic action of cop9mer-1 analog appears to involve permeabilization of the bacterial cell membrane while cop9mer-2 and cop9mer-3 may have different mechanism of action. These results imply that that optimum balance in hydrophobicity and hydrophilicity in these 9-meric peptides plays key roles in their antimicrobial activities as well as cytotoxicities.

THE STRUCTURE, STRATIGRAPHY AND PETROLEUM GEOLOGY OF THE MURZUK BASIN, SOUTHWEST LIBYA

  • JHO Jhoon Soo
    • 한국석유지질학회:학술대회논문집
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    • 한국석유지질학회 2000년도 제7차 학술발표회 발표논문집
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    • pp.57-72
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    • 2000
  • The Murzuk Basin covers an area in excess of $350,000{\cal}km^2$, and is one of several intra-cratonic sag basins located on the Saharan Platform of North Africa. Compared with some of these basins, the Murzuk Basin has a relatively simple structure and stratigraphy, probably as a result of it's location on a the East Saharan Craton. The basin contains a sedimentary fill which reaches a thickness of about $4,000{\cal}m$ in the basin centre. This fill can be divided into a predominantly marine Paleozoic section, and a continental Mesozoic section. The principal hydrocarbon play consists of a glacial-marine sandstone reservoir of Cambro-Ordovician age, sourced and sealed by overlying Silurian shales. The present day borders of the basin are defined by tectonic uplifts, each of multi-phase generation, and the present day basin geometry bears little relation to the more extensive Early Palaeozoic sedimentary basin within which the reservoir and source rocks were deposited. The key to the understanding of the Cambro-Ordovician play is the relative timing of oil generation compared to the Cretaceous and Tertiary inversion tectonics which influenced source burial depth, reactivated faults and reorganised migration pathways. At the present day only a limited area of the basin centre remains within the oil generating window. Modelling of the timing and distribution of source rock maturity uses input data from AFTA and fluid inclusion studies to define palaeo temperatures, shale velocity work to estimate maximum burial depth and source rock geochemistry to define kinetics and pseudo-Ro. Migration pathways are investigated through structural analysis. The majority of the discovered fields and identified exploration prospects in the Murzuk Basin involve traps associated with high angle reverse faults. Extensional faulting occurred in the Cambro-Ordovician and this was followed by repeated compressional movements during Late Silurian, Late Carboniferous, Mid Cretaceous and Tertiary, each associated with regional uplift and erosion.

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Pb(Ⅱ) 이온을 이용한 Pseudomonas alcaligenes 5S rRNA의 고차원 구조 분석 (Analysis of Higher Order Structure of 5S rRNA from Pseudomonas alcaligenes by using Pb(Ⅱ) Ion)

  • 김상범;이영훈;박인원
    • 대한화학회지
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    • 제39권6호
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    • pp.453-458
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    • 1995
  • Pb^{2+}$을 Pseudomonas alcaligenes 5S rRNA의 구조 분석에 응용하였다. Pb^{2+}$이 5S rRNA를 절단하는 방식은 5S rRNA의 삼차구조의 조사에 이용할 수 있을 것으로 기대되는 몇 가지 특징들을 보였다. Pb^{2+}$은 안정한 나선형 줄기들에는 작용하지 않는다. 단일가닥으로된 구역들 또는 내밀린 부분들은 그들의 분자내에서의 위치에 따라 다른 민감도로 작용을 받는다. 불안정한 d 나선은 전혀 작용을 받지 않는다. 불안정한 C 줄기에서는 3'쪽의 가닥만이 작용을 받고 5'쪽의 가닥은 작용을 받지 않는다. Pb^{2+}$에 의한 절단과 Xanthomonas celebensis 5S rRNA의 구조분석의 결과들에 기초하여 우리는5S rRNA에서의 삼차상호작용에 대한 작업가설을 제안하였다.

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동결-젤 주조 공정 기반 삼차부틸알코올을 이용한 단일방향 기공구조를 가지는 이상인산칼슘 세라믹 지지체의 제조 및 특성평가 (Fabrication and Characterization of Biphasic Calcium Phosphate Scaffolds with an Unidirectional Macropore Structure Using Tertiary-Butyl Alcohol-Based Freeze-Gel Casting Method)

  • 김경록;옥경민;김동현;박홍채;윤석영
    • 한국세라믹학회지
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    • 제50권4호
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    • pp.263-268
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    • 2013
  • Porous biphasic calcium phosphate scaffolds were fabricated by a freeze-gel casting technique using a tertiary-butyl alcohol (TBA)-based slurry. After sintering, unidirectional macropore channels of scaffolds aligned regularly along the TBA ice growth direction were tailored simultaneously with micropores formed in the outer wall of the pore channels. The crystallinity, micro structure, pore configuration, bulk density, and compressive strength for the scaffolds were investigated with X-ray diffractometery, scanning electron microscopy analysis, a water immersion method, and a universal test machine. The results revealed that the sintered porosity and pore size generally resulted in a high solid loading which resulted in low porosity and small pore size, which relatively increased the higher compressive strength. After being sintered at $1100-1300^{\circ}C$, the scaffolds showed an average porosity and compressive strength in the range 35.1-74.9% and 65.1-3.0 MPa, respectively, according to the processing conditions.

친핵성 첨가반응에 대한 용매효과 (I) Phenylvinylketone에 대한 아민의 첨가반응속도에 미치는 용매의 극성효과 (Solvent Effects on the Nucleophilc Addition (I) Effect of Solvent Polarity on the Nucleophilic Addition of Amine to Phenylvinylketone)

  • 신갑철;김태린
    • 대한화학회지
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    • 제36권2호
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    • pp.287-292
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    • 1992
  • 여러 가지 용매에서 phenylvinylketone에 대한 아민(piperidine 및 diethyl-amine)의 친핵성 첨가반응 속도 상수를 $25^{\circ}C$에서 분광광도법으로 측정한 결과 그의 첨가반응 속도상수는 용매의 극성에 비례함을 알았고 이것을 Kirkwood식으로 잘 설명할 수 있었다. 즉, 이 반응은 고리형 구조의 zwitter ion 중간체를 거쳐 일어남을 알 수 있었다. 또 phenylvinylketone에 대한 아민의 첨가반응에서 3차 아민은 1차 및 2차 아민에서 보다 반응이 훨씬 느리게 진행되었으며 이것은 1차 및 2차 아민에서는 고리형 구조의 zwitter ion 중간체를 형성할 수 있고 또한 음전하의 비편재화 및 엔올형의 구조까지 가능하지만 3차 아민에서는 위의 구조들이 불가능하기 때문에 1차 및 2차 아민에서 보다 느리게 진행된다고 생각된다.

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울산군 강동면 제 3기 정자분지(亭子盆地)의 지질구조와 분지발달 (Geological Structures and Evolution of the Tertiary Chŏngja Basin, Southeastern Margin of the Korean Peninsula)

  • 손문;김인수
    • 자원환경지질
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    • 제27권1호
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    • pp.65-80
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    • 1994
  • The Tertiary $Ch{\check{o}}ngja$ basin is located in the southeastern coastal area of the Korean Peninsula. It is a lozenge shaped fault-bounded basin with circa $5{\times}5km$ areal extent, isolated from other Tertiary basins by the Cretaceous Ulsan Formation in-between. The northwestern boundary of the basin is a domino/listric type normal fault trending $N30^{\circ}E$, whereas its southwestern boundary is a dextral strike-slip fault (trending $N20^{\circ}W$) with a lateral offset of more than 1 km. The basin is bounded by the East Sea on the eastern margin. Basin-fills consist of extrusive volcanic rock (Tangsa Andesites) of Early Miocene (16~22 Ma in radiometric age), unconsolidated fluviatile conglomerate (Kangdong Formation) and shallow brackish-water sandstone ($Sinhy{\check{o}}n$ Formation). The latter yields abundant Vicarya-Anadara molluscan fossils of early Middle Miocene age. The Tertiary strata become younger toward the northwestern boundary-fault of the basin, showing a zonal distribution pattern parallel to the fault: the younger sedimentary formations occupy a narrow zone of 2 km width along the northwestern boundary-fault, whereas the older Tangsa Andesites underlie them unconformably in the eastern and southeastern portions of the basin. The strata in the basin, including the Tangsa Andesites, are tilted (about $20^{\circ}$) toward the northwestern boundary-fault Sedimentary strata thicken toward the boundary-fault, forming a wedge shaped half-graben structure. A number of small-scale syndepositional normal growth faults and graben structures are observed in the sedimentary strata. These extensional structures have the same trend as the normal northwestern boundary-fault which we interpret as a pull-apart detachment fault. These characteristics imply persistent extension during the basin evolution, caused by a NW-SE directed tensional force. The $Ch{\check{o}}ngja$ basin is, thus, a kind of syndepositional tectonic basin evolved in a strike-slip (pull-apart) regime. The latter was caused by a dextral simple shear associated with the NNW-SSE opening of the East Sea. In view of the fact that the normal growth faults do not cut through the uppermost portion of the youngest $Sinhy{\check{o}}n$ Formation, it is inferred that the tensional force came to be inactive in the early Middle Miocene. This is coincident in timing with the termination of the East Sea opening (15 Ma).

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