• 제목/요약/키워드: Sequence to Sequence

검색결과 15,176건 처리시간 0.044초

미토콘드리아 12S rRNA 유전자 변이 조사를 통한 잉어(Cyprinus carpio)의 유전학적 동정 (Genetic Stock Identification of Common Carp (Cyprinus carpio) by Detection of Intraspecific DNA Sequence Variation in the Mitochondrial 12S rRNA Gene)

  • 남윤권;주수동;정창화;노충환;조재윤;김동수
    • 한국양식학회지
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    • 제10권4호
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    • pp.403-407
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    • 1997
  • Intraspecific sequence variation was detected by polymerase chain reaction (PCR) and direct sequencing of a 350-nucleotide region of the mitochondrial 12S rRNA gene of two natural populations (Han River and Nakdong River) and one hatchery stock (Jinhae Inland Fisheries Institute) of local strain common carp, one Israeli strain of common carp stock from Pukyong National University (PKU), and one hybrid between Israeli strain of common carp female and local strain common carp male from PKU stock. There is little variation in 350 bases of the mitochondrial 12S rRNA gene sequences among 2 natural and 1 hatchery local strain common carp populatins, representing abut 7 to 20 nucleotide differences (less than 6%). The sequence of specimens from Han River was more similar to that from Nakdong River (identity=98.0%) than to that from Jinhae Inland Fisheries Institute (identity=96.3%). Sequence variation between Israeli strain and wild local strain common carp was higher than the variation within natural stocks. The level of variation was ranged from 15.7 to 17.7%. The hybrid showed very similar nucleotide4 sequence of 12S rRNA gene to the sequence of Israeli strain with the identity of 98.9%.

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자연어 처리 모델을 활용한 퍼징 시드 생성 기법 (A Fuzzing Seed Generation Technique Using Natural Language Processing Model)

  • 김동영;전상훈;류민수;김휘강
    • 정보보호학회논문지
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    • 제32권2호
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    • pp.417-437
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    • 2022
  • Fuzzing에서 seed corpus의 품질은 취약점을 보다 빠르게 찾기 위해서 중요한 요소 중 하나라고 할 수 있다. 이에 dynamic taint analysis와 symbolic execution 기법 등을 활용하여 효율적인 seed corpus를 생성하는 연구들이 진행되어왔으나, 높은 전문 지식이 요구되고, 낮은 coverage로 인해 광범위한 활용에 제약이 있었다. 이에 본 논문에서는 자연어 처리 모델인 Sequence-to-Sequence 모델을 기반으로 seed corpus를 생성하는 DDRFuzz 시스템을 제안한다. 본 논문에서 제안하는 시스템은 멀티미디어 파일을 입력값으로 하는 5개의 오픈소스 프로젝트를 대상으로 관련 연구들과 비교하여 효과를 검증하였다. 실험 결과, DDRFuzz가 coverage와 crash count 측면에서 가장 뛰어난 성능을 나타냄을 확인할 수 있었고, 또한 신규 취약점을 포함하여 총 3개의 취약점을 탐지하였다.

Analogical Transfer: Sequence and Connection

  • LIM, Mi-Ra
    • Educational Technology International
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    • 제9권1호
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    • pp.79-96
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    • 2008
  • The issue of connection between entities has a lengthy history in educational research, especially since it provides the necessary bridge between base and target in analogical transfer. Recently, the connection has been viewed through the application of technology to bridge between sequences in order to be cognitively useful. This study reports the effect of sequence type (AT vs. TA) and connection type (fading vs. popping) on the achievement and analogical transfer in a multimedia application. In the current research, 10th -grade and 11th -grade biology students in Korea were randomly assigned to five groups to test the effects of presentation sequence and entity connection type on analogical transfer. Consistent with previous studies, sequence type has a significant effect: analogical transfer performance was better when base representations were presented first followed by target representations rather than the reverse order. This is probably because presenting a familiar base first helps in understanding a less familiar target. However, no fully significant differences were found with the entity connection types (fading vs. popping) in analogical transfer. According to the Markman and Gentner's (2005) spatial model, analogy in a space is influenced only by the differences between concepts, not by distance in space. Thus connection types fail on the basis of this spatial model in analogical transfer test. The findings and their implications for sequence and connection research and practice are discussed. Leveraging on the analogical learning process, specific implications for scaffolding learning processes and the development of adaptive expertise are drawn.

PVDHMM을 이용한 음소열 기반의 SDR 응용 (Spoken Document Retrieval Based on Phone Sequence Strings Decoded by PVDHMM)

  • 최대림;김봉완;김종교;이용주
    • 대한음성학회지:말소리
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    • 제62호
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    • pp.133-147
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    • 2007
  • In this paper, we introduce a phone vector discrete HMM(PVDHMM) that decodes a phone sequence string, and demonstrates the applicability to spoken document retrieval. The PVDHMM treats a phone recognizer or large vocabulary continuous speech recognizer (LVCSR) as a vector quantizer whose codebook size is equal to the size of its phone set. We apply the PVDHMM to decode the phone sequence strings and compare the outputs with those of a continuous speech recognizer(CSR). Also we carry out spoken document retrieval experiment through PVDHMM word spotter on the phone sequence strings which are generated by phone recognizer or LVCSR and compare its results with those of retrieval through the phone-based vector space model.

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A New Approach to Find Orthologous Proteins Using Sequence and Protein-Protein Interaction Similarity

  • Kim, Min-Kyung;Seol, Young-Joo;Park, Hyun-Seok;Jang, Seung-Hwan;Shin, Hang-Cheol;Cho, Kwang-Hwi
    • Genomics & Informatics
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    • 제7권3호
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    • pp.141-147
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    • 2009
  • Developed proteome-scale ortholog and paralog prediction methods are mainly based on sequence similarity. However, it is known that even the closest BLAST hit often does not mean the closest neighbor. For this reason, we added conserved interaction information to find orthologs. We propose a genome-scale, automated ortholog prediction method, named OrthoInterBlast. The method is based on both sequence and interaction similarity. When we applied this method to fly and yeast, 17% of the ortholog candidates were different compared with the results of Inparanoid. By adding protein-protein interaction information, proteins that have low sequence similarity still can be selected as orthologs, which can not be easily detected by sequence homology alone.

Space vector modulation을 이용한 대용량 멀티 레벨 H-bridge 인버터의 해석 및 모델링 (Analysis and modelling of the large capacity multilevel H-bridge inverter using Space vector modulation)

  • 김효진;정승기
    • 전력전자학회:학술대회논문집
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    • 전력전자학회 2003년도 춘계전력전자학술대회 논문집(1)
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    • pp.5-9
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    • 2003
  • Conventional variable-speed Induction motor drives with inverters are subject to detrimental effect of zero-sequence voltages, such a shaft voltage and bearing current. This paper presents a way of the suppression of the zero-sequence components in multilevel H-bridge inverters. First examined Is the inherent zero-sequence characteristic of the conventional subharmonic PW method. Then it is shown that the zero-sequence voltage can be eliminated with proper -selection of switching states with space vector modulation. Although this method alone restricts the linear modulation range of control, a combination of the proposed method and the minimum switching method appears to be effective in suppressing the zero-sequence voltage to minimum level while maintaining the linear control range.

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COII Sequence-based Study for Population Genetic Variation of a Ground Beetle, Scarites aterrimus (Coleoptera : Carabidae)

  • Wang, Ah-Rha;Kim, Ik-Soo
    • International Journal of Industrial Entomology and Biomaterials
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    • 제24권1호
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    • pp.41-47
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    • 2012
  • The Scarites aterrimus (Coleoptera: Carabidae) dwells exclusively on coastal sandy dunes. Previously, we investigated the nation-wide magnitude and nature of genetic diversity of the species using mitochondrial COI gene and found moderate to low magnitude of sequence diversity, the presence of closely related haplotypes, and relatively high gene flow estimate. Based on these observations we concluded that the species had no historical barriers that bolster genetic subdivision and possible population decline. In this study, we additionally sequenced mitochondrial COII gene from 23 individuals collected from 9 Korean localities to confirm previous findings. Sequencing of 688 bp COII gene provided 5 haplotypes ranging in sequence divergence from 0.145% to 0.291% (1 ~ 2 bp), further confirming low sequence divergence of the species. Gene flow estimates and genetic diversity estimates also support the previous findings that there had been no historical barriers that bolster genetic subdivision.

DEVELOPMENT OF XML BASED PERSONALIZED DATAASE MANAGEMENT SYTEM FOR BIOLOGISTS

  • Cho Kyung Hwan;Jung Kwang Su;Kim Sun Shin;Ryu Keun Ho
    • 대한원격탐사학회:학술대회논문집
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    • 대한원격탐사학회 2005년도 Proceedings of ISRS 2005
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    • pp.770-773
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    • 2005
  • In most biological laboratory, sequences from sequence machine are stored into file disks as simple files. It will be hard work to store and manage the sequence data with consistency and integrity such as storing redundant files. It is required needed to develop a system which integrated and managed genome data with consistency and integrity for accurate sequence analysis. There fore, in this paper, we not only store gene and protein sequence data through sequencing but also manage them. We also make a integrate schema for transforming the file formats and design database system using it. As integrated schema is designed as a BSML, it is possible to apply a style language of XSL. From this, we can transfer among heterogeneous sequence formats.

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숏넥 플랜지의 공정설계에 관한 연구 (A Study on the Process Sequence Design of a Short-Neck Flange)

  • 장용석;최진화;고병두;이호용;황병복
    • 한국정밀공학회지
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    • 제17권6호
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    • pp.127-134
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    • 2000
  • The current three-stage cold farming process to produce a flange is investigated for the purpose of improvement of manufacturing process. The main goal of this study is to obtain an appropriate process sequence, which can produce the required part with less manufacturing cost. The current process sequence is simulated using finite element method and design criteria are examined. Based on the results of simulation of the current three-stage process. a design strategy for improving the process sequence is analyzed using the thick-walled pipes. Because it has a reduced process-sequence without buckling of the workpiece or overloading of tools, the new process has distinct advantages over the conventional process. Numerical results show that the newly proposed process with selected presses is the most economical way to produce the required part.

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최소 DTW 거리 기반의 데이터 시퀀스 색인 기법 (Sequence Data Indexing Method based on Minimum DTW Distance)

  • 길기정;송석일;송재종;이석필;장세진;이종설
    • 한국콘텐츠학회논문지
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    • 제11권12호
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    • pp.52-59
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    • 2011
  • 이 논문에서는 시퀀스 데이터베이스에서 효과적인 유사 검색을 지원하기 위한 색인 기법을 제안한다. 제안하는 색인 기법에서는 데이터 시퀀스에 대한 필터링 효과를 얻기 위해, 최소 DTW 거리를 새롭게 제안한다. 최소 DTW 거리는 유사한 데이터 시퀀스 그룹과 질의 시퀀스 사이의 최소거리를 측정하는 방법이다. 최소 DTW 거리는 계층적인 색인 구조를 통해서 시퀀스 데이터베이스를 필터링하면서 유사도 검색을 수행할 수 있도록 한다. 마지막으로, 실험을 통해서 제안하는 방법의 우수성을 입증한다.