• Title/Summary/Keyword: Seed detection

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Development of Non-destructive Measurement System for the Detection of CGMMV Virus in Watermelon Seed(citrullus lanatus L) using Hyperspectral Imaging system (초분광 영상 시스템을 이용한 수박종자(Capsicum annuum L)의 오이 녹반 모자이크 바이러스(CGMMV) 감염의 비파괴 판별 시스템 개발)

  • Bae, Hyung-Jin;lohumi, Santosh;Kandpal, Lalit Mohan;Park, ChanHwan;Lim, Hyoun-Sub;Cho, Byoung-Kwan
    • Proceedings of the Korean Society for Agricultural Machinery Conference
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    • 2017.04a
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    • pp.43-43
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    • 2017
  • 종자산업은 농작물 생산에 중요한 역할을 끼치는 좌우하는 요소 중에 하나로, 우량종자의 확보는 농작물 수급에 중요한 역할을 하는 농업부문의 원천산업이다. 오이 녹반 모자이크 바이러스(CGMMV)는 박과류에 가장 많은 피해를 끼치는 바이러스로 종자전염을 방지하고, 우량종자의 공급을 위해서는 감염종자와 비 감염종자의 판별은 필수적이다. 이에 본 연구에서는 초분광 영상 시스템을 이용하여 수박종자의 CGMMV의 감염 및 비 감염종자를 판별할 수 있는 기술을 개발하고자 하였다. 본 연구에서 사용된 바이러스 감염 종자는 CGMMV 바이러스 감염 수박종자를 사용하였으며, 생산된 종자를 초분광 영상 시스템을 통해 스크린 후, RNA를 추출하여 PCR분석법으로 바이러스의 감염유무를 확인하였으며, 이후 바이러스의 감염유무와 획득된 스펙트럼을 비교 분석하여 판별모델을 개발하고 이를 선별 시스템에 적용하였다. 모델개발에 사용된 초분광 영상 기술은 초분광 SWIR(Shortwave infraed : 1000-2500nm)영상 기술이 다. 획득된 초분광 SWIR 영상을 분석한 결과 바이러스 감염 종자가 유의미한 정확도로 판별이 되는 것으로 나타났다. 초분광 SWIR 영상기술이 바이러스 감염종자와 비감염종자를 비파괴적으로 선별하는데 효과적으로 적용이 가능할 것으로 판단된다.

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Construction of Antibodies for Detection and Diagnosis of Cucumber green mottle mosaic virus from Watermelon Plants

  • Shim, Chang-Ki;Lee, Jung-Han;Hong, Sun-Min;Han, Ki-Soo;Kim, Hee-Kyu
    • The Plant Pathology Journal
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    • v.22 no.1
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    • pp.21-27
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    • 2006
  • We immunized BALB/c mice with purified Cucumber green mottle mosaic virus isolate HY1 (CGMMV-HY1). Through the selection of positive clones that were grown on the HAT medium, four sensitive monoclonal clones (CG99-01, CG99-02, CG99-03, and CG99-04) were selected from 500 Hypoxanthine-guanine phosphoribosyltransferase positive hybridoma cells. Four sensitive clones of CGMMV-HYI were determined as IgM type of the subclass of mouse immunoglobulins Ig group. The titer of monoclonal antiserum against CGMMVHY1 was estimated 1:12,800 by the indirect ELISA. Although monoclonal antibodies (MAbs) from CG99-01 and from CG99-04 cross-reacted with Zucchini green mottle mosaic virus and Kyuri green mottle mosaic virus, MAb from the cell line CG99-03 was highly specific to CGMMV. No MAbs cross-reacted with Cucumber mosaic virus-Fny. Only CG99-04 reacted with Pepper mild mottle virus weakly and CG99-02 reacted with both CGMMV and KGMMV. CGMMV was detected from the rind of watermelon fruit by DAS-ELISA of CGMMV-HY1, but not from the flesh of watermelon. Average seed transmission rate of CGMMV in watermelon was $24\%$ from symptomatic watermelon collected from 5 regions of Gyeongnam province. CGMMV was detected by DAS-ELISA with specific MAb of CGMMVHY1 periodically from root stock, during the sequential process for nursery seedling in Haman. Necrotic spots on cotyledons of root stock seedling progressed to reveal the typical symptomatology on the primary leaves of scion upon grafting. Here, we have established MAb based ELISA system, which could accurately detect CGMMV from watermelon seeds, nursery seedlings, transplants and field samples from greenhouse or open out door field as well.

DNA fingerprinting analysis for soybean (Glycine max) varieties in Korea using a core set of microsatellite marker (핵심 Microsatellite 마커를 이용한 한국 콩 품종에 대한 Fingerprinting 분석)

  • Kwon, Yong-Sham
    • Journal of Plant Biotechnology
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    • v.43 no.4
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    • pp.457-465
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    • 2016
  • Microsatellites are one of the most suitable markers for identification of variety, as they have the capability to discriminate between narrow genetic variations. The polymorphism level between 120 microsatellite primer pairs and 148 soybean varieties was investigated through the fluorescence based automatic detection system. A set of 16 primer pairs showed highly reproducible polymorphism in these varieties. A total of 204 alleles were detected using the 16 microsatellite markers. The number of alleles per locus ranged from 6 to 28, with an average of 12.75 alleles per locus. The average polymorphism information content (PIC) was 0.86, ranging from 0.75 to 0.95. The unweighted pair group method using the arithmetic averages (UPGMA) cluster analysis for 148 varieties were divided into five distinctive groups, reflecting the varietal types and pedigree information. All the varieties were perfectly discriminated by marker genotypes. These markers may be useful to complement a morphological assessment of candidate varieties in the DUS (distinctness, uniformity and stability) test, intervening of seed disputes relating to variety authentication, and testing of genetic purity in soybean varieties.

Physicochemical Treatment for the Reduction of Fusarium spp. Infested in Adlay (Coix lacryma-jobi L.) Seeds (율무 종자 오염 Fusarium 속 진균 저감화를 위한 이화학적 처리)

  • An, Tae Jin;Kim, Young Guk;Hur, Mok;Lee, Jeong Hoon;Lee, Yun Ji;Cha, Sun Woo;Oh, Sang Keun
    • Korean Journal of Medicinal Crop Science
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    • v.23 no.6
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    • pp.460-467
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    • 2015
  • Background : The aim of the present study was to identify an effective physicochemical control method to reduce Fusarium species infestation in adlay (Coix lacryma-jobi L.) before and after harvesting. Methods and Results : We observed that prochloraz emusifiable concentrate and hexaconazol prochloraz emusifiable concentrate strongly inhibited the mycelial growth of 10 Fusarium species. Strong growth inhibitions and cell lysis were observed following treatment with 4% NaOCl solution. The total number of fungi detected were lower follwing treatment with thiophanatemethyl triflumizole wettable powder ($1.1{\times}10^4CFU/g$), hexaconazol prochloraz emulsifiable concentrate ($1.2{\times}10^4CFU/g$), carboxin thiram dustable powder ($1.6{\times}10^4CFU/g$) and prochloraz emulsifiable concentrate ($1.7{\times}10^4CFU/g$) than in the non-treated control ($7.7{\times}10^4CFU/g$). The reduction of Fusarium fungi varies with the concentration and soaking time of NaOCl solution. Fungal detection was not observed after soaking in NaOCl solution for 24 h and harmful effects were not observed for plant growth by NaOCl after soacking for 6 - 12 h. Conclusion : Soaking seed for 6 - 12 h in 4% NaOCl could be an effective method of disinfectant treatment for the control of Fusarium fungi in adlay seeds.

Improvement of Building Region Correspondence between SLI and Vector Map Based on Region Splitting (영역분할에 의한 SLI와 벡터 지도 간의 건물영역 일치도 향상)

  • Lee, Jeong Ho;Ga, Chill O;Kim, Yong Il;Yu, Ki Yun
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.30 no.4
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    • pp.405-412
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    • 2012
  • After the spatial discrepancy between SLI(Street-Level Imagery) and vector map is removed by their conflation, the corresponding building regions can be found based on SLI parameters. The building region correspondence, however, is not perfect even after the conflation. This paper aims to improve the correspondence of building regions by region splitting of an SLI. Regions are initialized by the seed lines, projection of building objects onto SLI scene. First, sky images are generated by filtering, segmentation, and sky region detection. Candidates for split lines are detected by edge detector, and then images are splitted into building regions by optimal split lines based on color difference and sky existence. The experiments demonstrated that the proposed region splitting method had improved the accuracy of building region correspondence from 83.3% to 89.7%. The result can be utilized effectively for enhancement of SLI services.

Real-time Fault Detection and Classification of Reactive Ion Etching Using Neural Networks (Neural Networks을 이용한 Reactive Ion Etching 공정의 실시간 오류 검출에 관한 연구)

  • Ryu Kyung-Han;Lee Song-Jae;Soh Dea-Wha;Hong Sang-Jeen
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.9 no.7
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    • pp.1588-1593
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    • 2005
  • In coagulant control of water treatment plants, rule extraction, one of datamining categories, was performed for coagulant control of a water treatment plant. Clustering methods were applied to extract control rules from data. These control rules can be used for fully automation of water treatment plants instead of operator's knowledge for plant control. To perform fuzzy clustering, there are some coefficients to be determined and these kinds of studies have been performed over decades such as clustering indices. In this study, statistical indices were taken to calculate the number of clusters. Simultaneously, seed points were found out based on hierarchical clustering. These statistical approaches give information about features of clusters, so it can reduce computing cost and increase accuracy of clustering. The proposed algorithm can play an important role in datamining and knowledge discovery.

Biological Synthesis of Au Core-Ag Shell Bimetallic Nanoparticles Using Magnolia kobus Leaf Extract (목련잎 추출액을 이용한 Au Core-Ag Shell 합금 나노입자의 생물학적 합성)

  • Song, Jae Yong;Kim, Beom Soo
    • Korean Chemical Engineering Research
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    • v.48 no.1
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    • pp.98-102
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    • 2010
  • Magnolia kobus leaf extract was used for the synthesis of bimetallic Au core-Ag shell nanoparticles. Gold seeds and silver shells were formed by first treating aqueous solution of $HAuCl_4$ and then $AgNO_3$ with the plant leaf extract as reducing agent. UV-visible spectroscopy was monitored as a function of reaction time to follow the formation of bimetallic nanoparticles. The synthesized bimetallic nanoparticles were characterized with transmission electron microscopy(TEM), energy dispersive X-ray spectroscopy(EDS), and X-ray photoelectron spectroscopy(XPS). TEM images showed that the bimetallic nanoparticles are a mixture of plate(triangles, pentagons, and hexagons) and spherical structures. The atomic Ag contents of the bimetallic Au/Ag nanoparticles determined from EDS and XPS analysis were 34 and 65 wt%, respectively, suggesting the formation of bimetallic Au core-Ag shell nanostructure. This core-shell type nanostructure is expected to have potential for application in surface enhanced Raman spectroscopy and in the sensitive detection of biomolecules.

Security Analysis of MAC Algorithm using Block Cipher (블록 암호 알고리즘을 애용한 MAC 분석)

  • Seo Chang-Ho;Yun Bo-Hyun;Maeng Sung-Reol
    • Journal of the Korea Society of Computer and Information
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    • v.10 no.2 s.34
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    • pp.39-47
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    • 2005
  • This paper proposes and analyzes the MAC(Message Authentication Code) algorithm that is used for the transition integrity and the entity authentication of message. The MAC algorithm uses the DES algorithm which has 64-bit block and 56-bit key and we compare the security according to 64-bit and 32-bit length of MAC value. Moreover, we use the SEED algorithm which has 128-bit block and 128-bit key and compare the security according to 128-bit and 64-bit length of MAC value. We analyze the security the forgery attack according to length of message and length of MAC value. this paper, a coarse-to-fine optical flow detection method is proposed. Provided that optical flow gives reliable approximation to two-dimensional image motion, it can be used to recover the three-dimensional motion. but usually to get the reliable optical flows are difficult. The proposed algorithm uses Horn's algorithm (or detecting initial optical flow, then Thin Plate Spline is introduced to warp a image frame of the initial optical flow to the next image frame. The optical flow for the warped image frame is again used iteratively until the mean square error between two image sequence frames is lowered. The proposed method is experimented for the real moving Picture image sequence. The proposed algorithm gives dense optical flow vectors.

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Germplasm Detection for titi Genotype Using SSR Marker in Soybean

  • Kim, Myung-Sik;Jeong, Woo-Hyeun;Nam, Ki-Chul;Park, Mo-Se;Lee, Kyoung-Ja;Chung, Jong-Il
    • Journal of Crop Science and Biotechnology
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    • v.10 no.3
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    • pp.159-162
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    • 2007
  • Soybean Kunitz trypsin inhibitor(SKTI) protein is a small, monomeric and non-glycosylated protein containing 181 amino acid residues and is responsible for the inferior nutritional quality of unheated or incompletely heated soybean meal. The objective of this research is to confirm SSR marker(Satt228) tightly linked to the Ti locus using several germplasm accessions with TiTi or titi genotypes for MAS in soybean breeding programs. TiTi genotypes('Jinpumkong2', 'Clark', and 'William') had allele1 and titi genotypes(PI196168, C242, W60, and PI157440) had allele2 in Satt228 marker analysis. 'Jinpumkong2', 'Clark', and 'William'(TiTi genotype) had a Kunitz trypsin inhibitor protein of 21.5 kDa size, and PI196168, C242, W60, and PI157440(titi genotype) did not have the band in protein gel electrophoresis from the mature seed. Cosegregation between the SKTI protein(21.5 kDa size) and allele of Satt228 marker was observed in seven germplasm accessions with different genetic backgrounds. Any recombination between the SKTI protein and allele of the Satt228 marker was not observed. This result indicates that Satt228 marker may effectively utilized to select the plants with the titi genotype.

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Mapping of Quantitative Trait Loci Associated with Viviparous Germination in Rice

  • Lee, Seung-Yeob;Ahn, Jeong-Ho;Cha, Young-Soon;Yun, Doh-Won;Lee, Myung-Cheol;Eun, Moo-Young
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.51 no.6
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    • pp.565-570
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    • 2006
  • The viviparous germination (VG) with lodging caused the yield reduction and quality deterioration in rice. We carried out the evaluation of VG tolerance (on the 40th day after heading) and mapping QTLs associated with VG tolerance using the recombinant inbred lines (M/G RILs) from a cross between Milyang 23 (japonica/indica) and Gihobyeo (japonica). The VG rates of Milyang 23 and Gihobyeo were 0.0 and 7.0%, respectively. The averaged VG rate of 162 M/G RILs was 7.7%, and their range was from 0.0 to 50.9%. Of the 162 RILs, 144 lines were tolerant less than 10%, and 18 lines were susceptible more than 10%. Using the M/G RIL Map, three QTLs associated with the viviparous trait were detected on chromosome 2 (qVG 2-1 and qVG 2-2) and 8 (qVG 8). qVG 2-1 was linked to RM 32D and RZ 166, and had LOD score of 2.97. qVG 2-2 was tightly linked to E13M59.119-Pl and E13M59.M003-P2, and showed higher LOD score of 3.41. qVG 8 was linked to RM33 and TCT116, and had LOD score of 2.67. The total phenotypic variance explained by the three QTLs was about 24.4% of the total variance in the population. The detection of new QTLs associated with VG tolerance will provide important informations for the seed dormancy, low temperature germination, or comparative genetics.