• Title/Summary/Keyword: SRE

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Cloning and Characterization of BTG-1 Gene from Pacific Oyster (Crassostrea gigas) (참굴(Crassostrea gigas)의 BTG1 유전자의 특성)

  • Chung, In Young;Oh, Jeong Hwan;Song, Young Hwan
    • Journal of Life Science
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    • v.27 no.4
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    • pp.398-407
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    • 2017
  • BTG 1 (B-cell translocation gene 1) gene was first identified as a translocation gene in a case of B-cell chronic lympocytic leukemia. BTG1 is a member of the BTG/TOB family with sharing a conserved N-terminal region, which shows anti-proliferation properties and is able to stimulate cell differentiation. In this study, we identified and characterized the pacific oyster Crassostrea gigas BTG1 (cg-BTG1) gene from the gill cDNA library by an Expressed Sequence Tag (EST) analysis and its nucleotide sequence was determined. The cg-BTG1 gene encodes a predicted protein of 182 amino acids with 57% 56% identities to its zebrafish and human counterparts, and is an intron-less gene, which was confirmed by PCR analysis of genomic DNA. Maximal homologies were shown in conserved Box A and B. The deduced amino acid sequence shares high identity with other BTG1 genes of human, rat, mouse and zebrafish. The phylogenic analysis and sequence comparison of cg-BTG1 with other BTG1 were found to be closely related to the BTG1 gene structure. In addition, the predicted promoter region and the different transcription-factor binding site like an activator protein-1 (AP-1) response element involved in negative regulation and serum response element (SRE) were able to be identified by the genomic DNA walking experiment. The quantitative real-time PCR analysis showed that the mRNA of cg-BTG1 gene was expressed in gill, heart, digestive gland, intestine, stomach and mantle. The cg-BTG1 gene was expressed mainly in heart and mantle.

A study on the information management of hull lines manufacturing by using PC-CADRA (PC-CADRA 를 이용한 선체선도가공 정보처리에 관한 연구)

  • 박제웅;이현상
    • Journal of Ocean Engineering and Technology
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    • v.11 no.2
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    • pp.145-153
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    • 1997
  • This paper constructs a data base to create the Hull lines prior to piece manufacture and nesting steps with a personal computer using the data of created as the advanced software, TRIBON. The lines are plotted smoohtly, which are called the spline. The S/W is excellentlt estimated on the ptrcision among shipping exclusive S/W, which are currentlyused So, the S/W is mainly used as as shipping CAD program. High-cost H/W and high-performance S/W(TRIBON etc.) sre used with the bases of technique and capital power in the big shipbuilding yard; but small but small and medium-sized shipbuilding yard and related companycan't purchase dueto the high-cost product. To bring upthe small and medium sized shipbuilding yard lacking little competitive power, the data base S/W is joined with the CADRA of graphic S/W and is developed to create the Hull lines to be needed on as automatic cutting process usiing the personal computer.

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A Case of Pulmonary Hamartoma (폐과오종(肺過誤腫)의 일치험례(一治驗例))

  • Park, Gwang-Hun;Ji, Jeong-Hui
    • Journal of Chest Surgery
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    • v.9 no.2
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    • pp.169-174
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    • 1976
  • Since. its first description by Albrecht in 1904 that hamartoma (Greek. meaning "error" and "tumor")is tumor-like malformation characterized by abnormal mixture of normal constituent in any organ it arises, hamartoma involving the lung has assumed the following clinical features.: 1) all the pulmonary lesions presenting as "coin lesions", it occupies about 8% according to various reports. It also constitutes the most prevalent lesion of all the benign lung tumors, appearing in 0.25% of the general population. 2) Peak incidence of the lesion occurs in the 5th and 6th decade as the carcinoma patient do, and the occasional growing tendency and periperal location as in this presentation renders the differential diagnosis from the malignant disease difficult and surgical intervention inevitable for definite histological diagnosis and treatment. 3) Nearly all the clinical investigations such as history, physical exam, bronchoscopy, culture, and cytological exam of sputum sre likely to futile:the only tool for detecting the presence of the lesion is X-ray, butthat's short of telling the true nature of it. 4) Because of its age of presentation and growing tendency in middle-aged adult, it still controversial whether it is developmental anomaly as Albrecht described, or true neoplasm denovo of fibrous connective tissue origin. This is a case report of surgical experience of pulmonary hamartoma which had nearly all the typical clinical features above mentioned and was reviewed with related literatures.

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Recombinant fluorescent mammalian cells As Toxicity Biosensors

  • Kim, Eun-Jin;Lee, Yeong;Gu, Man-Bok
    • 한국생물공학회:학술대회논문집
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    • 2000.11a
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    • pp.208-211
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    • 2000
  • The recombinant fluorescent chinese hamster ovary (CHO) cell line was developed and optimized through this study for biomonitoring system. This cell line, called KFC-A10, contains recombinant plasmid(pKCFG) constructed in this study for detecting toxic conditions (Mitomicyn C, EDCs, ${\gamma}-ray$, etc.). It is known that c-Fos is involved in proliferation and differentiation of the signal transduction and overexpression of this gene can lead cell to death under the toxic conditions including apoptosis status. Therefore, pKCFG which has the c-fosSRE::GFP is induced by toxic chemicals, especially DNA damage agents and apoptotic chemicals, and produces green fluorescence protein(GFP) under these toxic conditions. Through the characterization of KFC-A10 using fluorescent assays of GFP, it was shown that KFC-A10 cell line had a manifest GFP expression pattern due to various toxicants especially mitomycin C, ${\gamma}-ray$ and bisphenol A. Therefore this study proved the possibility of using GFP as a reporter for detecting various toxicants

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Evaluation of Frequency Warping Based Features and Spectro-Temporal Features for Speaker Recognition (화자인식을 위한 주파수 워핑 기반 특징 및 주파수-시간 특징 평가)

  • Choi, Young Ho;Ban, Sung Min;Kim, Kyung-Wha;Kim, Hyung Soon
    • Phonetics and Speech Sciences
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    • v.7 no.1
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    • pp.3-10
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    • 2015
  • In this paper, different frequency scales in cepstral feature extraction are evaluated for the text-independent speaker recognition. To this end, mel-frequency cepstral coefficients (MFCCs), linear frequency cepstral coefficients (LFCCs), and bilinear warped frequency cepstral coefficients (BWFCCs) are applied to the speaker recognition experiment. In addition, the spectro-temporal features extracted by the cepstral-time matrix (CTM) are examined as an alternative to the delta and delta-delta features. Experiments on the NIST speaker recognition evaluation (SRE) 2004 task are carried out using the Gaussian mixture model-universal background model (GMM-UBM) method and the joint factor analysis (JFA) method, both based on the ALIZE 3.0 toolkit. Experimental results using both the methods show that BWFCC with appropriate warping factor yields better performance than MFCC and LFCC. It is also shown that the feature set including the spectro-temporal information based on the CTM outperforms the conventional feature set including the delta and delta-delta features.

Identification of Ku70/Ku80 as ADD1/SREBP1c Interacting Proteins

  • Lee, Yun Sok;Koh, Hae-Young;Park, Sang Dai;Kim, Jae Bum
    • Animal cells and systems
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    • v.8 no.1
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    • pp.49-55
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    • 2004
  • In vertebrates, multisubunit cofactors regulate gene expression through interacting with cell-type- and gene-specific DNA-binding proteins in a chromatin-selective manner. ADD1/SREBP1c regulates fatty acid metabolism and insulin-dependent gene expression through binding to SRE and E-box motif with dual DNA binding specificity. Although its transcriptional and post-translational regulation has been extensively studied, its regulation by interacting proteins is not well understood. To identify cellular proteins that associate with nuclear form of ADD1/SEBP1c, we employed the GST pull-down system with Hela cell nuclei extract. In this study, we demonstrated that Ku proteins interact specifically with ADD1/SREP1c protein. GST pull-down combined with peptide sequencing analysis revealed that Ku80 binds to ADD1/SREBP1c in vitro. Additionally, western blot analysis showed that Ku70, a heterodimerizing partner of Ku80, also associates with ADD1/SREBP1c. Furthermore, co-transfection of Ku70/Ku80 with ADD1/SREBP1c enhanced the transcriptional activity of ADD1/SREBP1c. Taken together, these results suggest that the Ku proteins might be involved in the lipogenic and/or adipogenic gene expression through interacting with ADD1/SREBP1c.

Effect of Scutellariae Radix extraction (SRE) on oxidant-induced cell injury in human glimona cells (황금 추출물이 사람의 glioma 세포에서 oxidant에 의한 세포손상에 미치는 효과)

  • Kim, Sung-Dae;Jeong, Ji-Cheon
    • The Journal of Internal Korean Medicine
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    • v.22 no.2
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    • pp.183-191
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    • 2001
  • 신경교세포에서 황금추출물이 반응성 산소기에 의한 세포 사망을 방지할 수 있는지를 확인하기 위하여 사람의 glioama 세포주인 A172 세포를 사용하여 $H_2O_2$의 독성작용에 대한 영향을 조사하였다. 세포 사망 정도는 tryptan blue exclusion과 MTT reduction assay로 평가하였다. $H_2O_2$는 세포 사망을 유도하였으며 또한 세포내 ATP 함량을 감소시켰으며, 이러한 효과는 황금 추출물에 의해 방지되었으며 그 효과는 농도 의존적으로 나타났다. $H_2O_2$에 의한 세포 사망은 잘 알려진 flavonoid인 quercetin과 철착염제인 phenanthroline에 의해 방지되었으나, 항산화제인 DPPD나 Trolox에 의해서는 영향을 받지 않았다. $H_2O_2$는 poly (ADP-ribose) polymerase를 활성화시켰으며, 이러한 효과는 황금, quercetin 및 phenanthroline에 의해 억제되었다. 황금 추출물은 유기산화제인 t-buthyhydroperoxide 및 중금속인 수은에 의한 세포 사망을 방지하였다. 이러한 실험 결과는 황금 추출물이 $H_2O_2$에 의한 세포 사망을 방지하며 그 효과는 황금의 flavonoid 성분이 철과 결합하여 $H_2O_2$로부터 hydroxy radical의 생성을 억제함으로써 나타나는 것으로 추측된다.

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Visual Object Tracking using Surface Fitting for Scale and Rotation Estimation

  • Wang, Yuhao;Ma, Jun
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.15 no.5
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    • pp.1744-1760
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    • 2021
  • Since correlation filter appeared in the field of object tracking, it plays an increasingly vital role due to its excellent performance. Although many sophisticated trackers have been successfully applied to track the object accurately, very few of them attaches importance to the scale and rotation estimation. In order to address the above limitation, we propose a novel method combined with Fourier-Mellin transform and confidence evaluation strategy for robust object tracking. In the first place, we construct a correlation filter to locate the target object precisely. Then, a log-polar technique is used in the Fourier-Mellin transform to cope with the rotation and scale changes. In order to achieve subpixel accuracy, we come up with an efficient surface fitting mechanism to obtain the optimal calculation result. In addition, we introduce a confidence evaluation strategy modeled on the output response, which can decrease the impact of image noise and perform as a criterion to evaluate the target model stability. Experimental experiments on OTB100 demonstrate that the proposed algorithm achieves superior capability in success plots and precision plots of OPE, which is 10.8% points and 8.6% points than those of KCF. Besides, our method performs favorably against the others in terms of SRE and TRE validation schemes, which shows the superiority of our proposed algorithm in scale and rotation evaluation.

Genome-Wide Analysis of Hypoxia-Responsive Genes in the Rice Blast Fungus

  • Choi, Jaehyuk;Chung, Hyunjung;Lee, Gir-Won;Koh, Sun-Ki;Chae, Suhn-Kee;Lee, Yong-Hwan
    • 한국균학회소식:학술대회논문집
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    • 2015.05a
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    • pp.13-13
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    • 2015
  • Rice blast fungus, Magnaporthe oryzae, is the most destructive pathogen of rice in the world. This fungus has a biotrophic phase early in infection and switches to a necrotrophic lifestyle after host cell death. During the biotrophic phase, the fungus competes with host for nutrients and oxygen. Continuous uptake of oxygen is essential for successful establishment of blast disease of this pathogen. Here, we report transcriptional responses of the fungus to oxygen limitation. Transcriptome analysis using RNA-Seq identified 1,047 up-regulated genes in response to hypoxia. Those genes were involved in mycelial development, sterol biosynthesis, and metal ion transport based on hierarchical GO terms and well-conserved among three different fungal species. In addition, null mutants of three hypoxia-responsive genes were generated and tested for their roles on fungal development and pathogenicity. The mutants for a sterol regulatory element-binding protein gene, MoSRE1, and C4 methyl sterol oxidase gene, ERG25, exhibited increased sensitivity to hypoxia-mimetic agent, increased conidiation, and delayed invasive growth within host cells, suggesting important roles in fungal development. However, such defects did not cause any significant decrease in disease severity. The other null mutant for alcohol dehydrogenase gene, MoADH1, showed no defect in the hypoxia-mimic condition and fungal development. Taken together, this comprehensive transcriptional profiling in response to a hypoxia condition with experimental validations would provide new insights on fungal development and pathogenicity in plant pathogenic fungi.

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Scale Development and Model Validation for the Process of Exercise Engagement for People with Prediabetes

  • Chang, Shu-Chuan;Yeh, Hsiu-Chen;Kuo, Yu-Lun
    • Journal of Korean Academy of Nursing
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    • v.50 no.2
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    • pp.298-312
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    • 2020
  • Purpose: This study had two objectives: 1) to develop a scale for the process of exercise engagement (SPEE) for prediabetic individuals (PDIs); 2) to validate a structural model for the process of exercise engagement for PDIs. Methods: A cross-sectional survey with simple random sampling was conducted from September 2013 to December 2015 (in Taiwan). A total of 310 PDIs were enrolled for scale development and model validation via item analysis, factor analyses, and structural equation modeling. The Kuo model was used as the basis for developing the Chinese version of the SPEE for PDIs. Results: The SPEE contains five subscales with a total of twenty-one items that account for 54.9% to 65.9% of the total variance explained for assessing participants' process of engagement during exercise. For Kuo model validation, the model measures indicated goodness of fit between the Kuo model and sample data. Analysis further revealed a direct effect between the creating health blueprints (CHB) stage and the spontaneous regular exercise (SRE) stage (β=.60). Conclusion: The SPEE includes five subscales for assessing the psychological transition and behavioral expression at each stage of the process of exercise engagement for PDIs. The SPEE for people with prediabetes provides deeper insights into the factors of behavioral change stages that are required to initiate long-term health care outcomes and avoid developing diabetes. These insights are significant as they allow for patient-specific mapping and behavior modification to effect exercise.