• Title/Summary/Keyword: Restriction pattern

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Mixed Infection of Sugarcane Yellow Leaf Virus and Grassy Shoot Phytoplasma in Yellow Leaf Affected Indian Sugarcane Cultivars

  • Nithya, Kadirvel;Parameswari, Balasubramaniam;Viswanathan, Rasappa
    • The Plant Pathology Journal
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    • v.36 no.4
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    • pp.364-377
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    • 2020
  • Sugarcane is an important sugar crop contributes more than 80% of world sugar production. Mosaic, leaf fleck, and yellow leaf (YL) are the major viral diseases affecting sugarcane, amongst YL occurrence is widely reported in all the sugarcane growing countries. It is caused by Sugarcane yellow leaf virus (SCYLV) and detailed works were done on complete genome characterization, transmission, and management. However, in countries like Egypt, South Africa, Cuba, Mauritius and Hawaii, the disease was reported to the cause of sugarcane yellow leaf phytoplasma (SCYP) and/or SCYLV as single/combined infections. Hence, we have investigated in detail to identify the exact Candidatus phytoplasma taxon associated in Indian cultivars affected with YL. The sequencing results and the restriction fragment length polymorphism pattern of the PCR products using the universal phytoplasma primers confirmed presence of sugarcane grassy shoot (SCGS) phytoplasma (16SrXI group) in the YL-affected plants. Mixed infection of SCYLV and SCGS phytoplasma was estimated as 32.8% in YL affected plants. Evolutionary genetic relationship between SCYP and SCGS phytoplasma representatively taken from different countries showed that SCYP from South Africa and Cuba were diverged from others and had a highest similarity with SCGS phytoplasma. Although we wanted to identify SCYP from YL affected Indian sugarcane cultivars, the study clearly indicated a clear absence of SCYP in YL affected plants and we found SCYLV as the primary cause for the disease.

Seasonal Differences of Cultivable Bacterial Communities Associated with the Marine Sponge, Petrosia corticata, Collected from Jeju Island (제주도에 서식하는 Petrosia corticata 해면의 배양가능한 공생세균 군집구조의 계절적 차이)

  • Jeong, Jong-Bin;Park, Jin-Sook
    • Journal of Marine Bioscience and Biotechnology
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    • v.7 no.2
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    • pp.42-51
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    • 2015
  • The community structure of cultivable bacteria associated with the marine sponge, Petrosia corticata, collected from Jeju Island in summer (September) of 2012 and winter (January) of 2013, were compared by the PCR-ARDRA method. Bacterial strains were cultured for 4 days at $26^{\circ}C$ on Zobell medium and marine agar medium. After PCR amplification of 16S rRNA gene of individual strains, the restriction enzymes MspI and HaeIII were used to make restriction patterns. As a result, 24 ARDRA patterns from the summer sponge and 20 ARDRA patterns from the winter sponge were obtained. The sequencing result of 1-3 selected strains from each pattern showed over 98% similarities with the known sequences from the public database. At the phylum level, the bacterial community structures of both sponges (summer and winter) were identical qualitatively and composed of 4 phyla : Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. Alphaproteobacteria accounted for 42.5% of total in summer sponge and 25.2% in winter, decreasing in the winter sample. Gammaproteobacteria accounted for 27.5% of total in summer sponge and 35.2% in winter, increasing in the winter sample. At the genus and species level, summer sponge had more diverse bacterial communities than winter sponge. Actinobacteria, Bacteroidetes, and Firmicutes increased in the winter sample.

Implementation and Design of Virtual Input System Using Realtime Recognition (실시간 인식기술을 이용한 가상입력시스템 설계 및 구현)

  • Kim, Yong-Soo;Han, Pan-Am
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.8 no.3
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    • pp.535-540
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    • 2007
  • The hand recognition technique is widely used to the economic input method for user interfacing environment. However, the most of the techniques have the restricted with recognize that only a fixed background and a regular pattern. This restriction character has brought a difficult problem to apply at variable application class and to process restriction environment. In this paper, we propose a virtual input system that extracting about hand region information that is not restricted by background image and also that can be followed the location information. This research could be used some system demanded by input of a person such as control system at airport and pavilion and economic virtual input system in class of industrial computer and various kinds control-system.

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PCR Approach for Detection and Typing of Epidermodysplasia Verruciformis-associated Human Papillomavirus Types

  • Shin, Yong-Jae;Choi, Hyun-Chul;Kim, Chan-Gil;Lee, Kwang-Ho
    • The Journal of Korean Society of Virology
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    • v.29 no.1
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    • pp.39-44
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    • 1999
  • Warts, or verrucae, are benign epithelial proliferations of the skin and mucosa caused by infection with human papillomaviruses (HPV). It is now recognized that there are many different HPV types. Especially type3 is most frequently observed in flat wart. Other types, such as type2, 10, 14, 27, 28, 29, 38, and 41 are rarely encounted in flat wart. We describe here a simple and economic method for detection and identification of epidermodysplasia verruciformis-associated HPV. The method is based on polymerase chain reaction (PCR) amplification and restriction analysis. The method has been developed with cloned HPV DNA and DNA from clinical samples. Clinical samples are from either frozen tissue or paraffin-embedded tissue. Genomic fragments were obtained from two different HPV types (3 and 10). The amplification fragments were identified by a form of miniature fingerprinting, with a set of restriction enzymes that gave a unique digestion pattern for each HPV type. We have tested 74 clinical samples. Only type3 among these clinical samples is detected, and one sample is involved in neither type3 nor type10.

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PCR-RFLP patterns of four isolates of Trichinella for rDNA ITSI region

  • Kwon, Hye-Soo;Chung, Myung-Sook;Joo, Kyoung-Hwan
    • Parasites, Hosts and Diseases
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    • v.39 no.1
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    • pp.43-48
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    • 2001
  • We have studied the genetic differences among four isolates of Trichinella including a new strain of Trichinella spiralis (ISS 623) recently found from a human case who took a badger in Korea. Because they have a different host origin and came from geographically separated regions, we supposed the genetic pattern of the isolates might be different as had been previously reported. It was analysed by PCR-RFLP analysis of the rDNA repeat that can readily distinguish a species or strain from others. Isolated genomic DNA of each isolate of Trichinella larvae was amplified with ITSl specific primers and digested with restriction endonucleases. The PCR product of ITSl was confirmed using Southern blot analysis to be a 910 Up fragment. The restriction fragments of each isolate had variable patterns when it was digested with Rsa I only. According to the RFLP patterns, the estimated genetic divergence between each isolate was different. In conclusion, four isolates of Thichinella including a new strain of T. spiralis obtained from a Korean patient may have genetic differences in the ITSl region and the Shanghai isolate was genetically more similar to the Japanese unknown isolate than others in the ITSl region.

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Cloning and Characterization of Highly Repetitive Sequences in the Genome of Allium sativum L. (마늘(Allium sativum L.) 게놈의 고반복서열의 분이와 특성 조사)

  • 이동희
    • Journal of Plant Biology
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    • v.39 no.1
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    • pp.49-55
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    • 1996
  • We have studied the DNA of Allium sativum L. with respect to highly repetitive sequences. Fast reassociated DNA fragments expected to be highly repetitive sequences based on $C_{o}t$ curve were isolated and characterized. Their copy numbers were approximately $10^{5}~10^{7}$ per haploid genome. Nucleotide sequences analysis of six candidates reveals that their G/C content were low, 25-40% and typical patterns of repeating sequences exist. Repeat sequences were used as probes to access restriction fragment length polymorphism (RFLP) of genomic DNAs of four local clones, Tanyang, Mungyong, So san, and Uisong. The hybridization pattern were very similar among these four local clones.clones.

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Light-Dark and Food Restriction Cycles in Red sea bream, Pagrus major: Effect of Zeitgebers on Demand-feeding Rhythms

  • Choe Yong-Gwon;Choi Jae-Eun;Roh Duk-Whan;Bae Bong-Seong;Choi Cheol-Young
    • Fisheries and Aquatic Sciences
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    • v.4 no.3
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    • pp.138-143
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    • 2001
  • Red sea bream, Pagrus major a fish species characterized by its dualistic feeding pattern, was investigated to study the synchronizing effect of light and food on the demand-feeding rhythm. Nocturnal and diurnal red sea bream, both in groups and individually, were exposed to restricted-feeding and Light-Dark cycles of different periods. The phase relationship between both zeitgebers was also studied. In some cases, food availability restricted to the light or dark phase contrary to that of the previous feeding phase changed a diurnal feeding pattern into nocturnal and vice versa, suggesting that food can be one of the switching factors that decides whether the circadian system of red sea bream is diurnal or nocturnal. However, the fact that the feeding pattern of some fish was unrelated with the phase in which food was available suggests that other internal and/or external-factors could be involved in the temporal flexibility of red sea bream.

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Eating Pattern, Weight Control Behavior and Nutritional Status in High Level Female Gymnasts (여자체조선수의 섭식패턴, 채중조절방법 및 영양섭취상태(제1보))

  • 조성숙
    • Journal of Nutrition and Health
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    • v.32 no.1
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    • pp.40-49
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    • 1999
  • This study was conducted with 20 female gymnasts and 23 age-matched controls to examine pattern, weight control behavior and nutritional status. Most gymnasts(95.0%) reported that they used weight-control methods, while relatively few age-matched controls employed these methods. These methods included sauna(95.0%), food restriction(90.0%), excess exercise (70.0%), laxative abuse(10%) and use of diet pills(10%). Gymnasts had significantly (p<0.05) lower scores for statements related to 'sneaking food', 'vomiting after overeating', showing more negative eating behavior than age-matched controls. Energy intake of gymnasts was 968.9$\pm$421.4kcal while energy expenditure was 2,091$\pm$361kcal, showing negative evergy balance(-1,1225$\pm$534.6kcal). Female gymnasts consumed less than 70% of the RDA for protein, calcium, iron, vitamin A, thiamin, riboflavin and niacin, which reflects their low energy intake. The average intakes of calcium, iron, vitamin A, thiamin, riboflavin and niacin did not meet the recommended dietary allowances for their age groups. Adolescent athletes who train vigorously and consume a low-energy diet may be exposed to an increase in potential health risks. Therefore, individuals who advise athletic adolescents regarding training and dietary habits need to emphasize the importance of consuming an appropriate energy intake to support performance as well as growth and development. The sports nutritionist is in a position to convey such information to coaches, physicians, parents and to the athletes themselves.

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Using an Adaptive Search Tree to Predict User Location

  • Oh, Se-Chang
    • Journal of Information Processing Systems
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    • v.8 no.3
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    • pp.437-444
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    • 2012
  • In this paper, we propose a method for predicting a user's location based on their past movement patterns. There is no restriction on the length of past movement patterns when using this method to predict the current location. For this purpose, a modified search tree has been devised. The search tree is constructed in an effective manner while it additionally learns the movement patterns of a user one by one. In fact, the time complexity of the learning process for a movement pattern is linear. In this process, the search tree expands to take into consideration more details about the movement patterns when a pattern that conflicts with an existing trained pattern is found. In this manner, the search tree is trained to make an exact matching, as needed, for location prediction. In the experiments, the results showed that this method is highly accurate in comparison with more complex and sophisticated methods. Also, the accuracy deviation of users of this method is significantly lower than for any other methods. This means that this method is highly stable for the variations of behavioral patterns as compared to any other method. Finally, 1.47 locations were considered on average for making a prediction with this method. This shows that the prediction process is very efficient.

Electrochemical Ion Migration Sensitivity of Printed Circuit Board Plated with Sn-3.0Ag-0.5Cu and Sn-37Pb (Sn-3.0Ag-0.5Cu, Sn-37Pb 표면처리 기판의 전기화학적 이온 마이그레이션 민감도)

  • Hong, Won-Sik;Park, No-Chang;O, Cheol-Min;Kim, Gwang-Bae
    • Proceedings of the KWS Conference
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    • 2006.10a
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    • pp.136-138
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    • 2006
  • Recently a lots of problems have observed in high densified and high integrated electronic components. One of them is ion migration phenomena, which induce the electrical short of electrical circuit. Ion migration phenomena has been observed in the field of exposing the specific environment and using for a long time. Also as the RoHS restriction was started in July 1st, 2006, Pb-free solder was utilized in electronics assemblies. In this case, it is very important to compatible between components and printed circuit board(PCB), thus surface treatment materials of PCB was changed to Sn, Sn-3.0Ag-0.5Cu, Cu. Therefore these new application become to need to reevaluate the sensitivity about electrochemical ion migration. This study was evaluated the occurrence time of electrochemical ion migration using by water drop test. We utilized PCB(printed circuit board) having a comb pattern as follows 0.1, 0.318, 0.5, 1.0 mm pattern distance. Sn-3.0Ag-0.5Cu and Sn-37Pb were electroplated on the comb pattern. 6.5V and 15.0V were applied in the comb pattern and then we measured the electrical short time causing by occurring the ion migration. In these results, we evaluate the sensitivity and derived the prediction models of ion migration occurrence time depending on the pattern materials, applied voltage and pattern spacing of PCB conductor.

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