• Title/Summary/Keyword: PCA(Principal Component Analysis

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Assessment of Water Quality in the Lower Reaches Namhan River by using Statistical Analysis and Water Quality Index (WQI) (통계분석 및 수질지수를 이용한 남한강 하류 유역의 수질 평가)

  • Cho, Yong-Chul;Choi, Hyeon-Mi;Ryu, In-Gu;Kim, Sang-hun;Shin, Dongseok;Yu, Soonju
    • Journal of Korean Society on Water Environment
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    • v.37 no.2
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    • pp.114-127
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    • 2021
  • Water pollution in the lower reaches of the Namhan River is getting worse due to drought and a decrease in water quantity due to climatic changes and hence is affecting the water quality of Paldang Lake. Accordingly, we have used a water quality index (WQI) and statistical analysis in this study to identify the characteristics of the water quality in the lower reaches of the Namhan River, the main causes of water pollution, and tributaries that need priority management. Typically, 10 items (WT, pH, EC, DO, BOD, COD, SS, T-N, T-P, and TOC) were used as the water quality factors for the statistical analysis, and the matrix of data was set as 324 × 10·1. The correlation analysis demonstrated a strong correlation between Chemical Oxygen Demand (COD) and T-P with a high statistical significance (r=0.700, p<0.01). Furthermore, the result of principal component analysis (PCA) revealed that the main factors affecting the change in water quality were T-P and organic substances introduced into the water by rainfall. Based on the Mann-Kendall test, a statistically significant increase in pH was observed in SH-1, DL, SH-2, CM, and BH, along with an increase in WQI in SH-2 and SM. BH was identified as a tributary that needs priority management in the lower reaches of the Namhan River, with a "Somewhat poor" (IV) grade in T-P, "Fair" grade in WQI, and "Marginal" grade in summer.

Chemical Oxygen Demand (COD) Model for the Assessment of Water Quality in the Han River, Korea (한강수질 평가를 위한 COD (화학적 산소 요구량) 모델 평가)

  • Kim, Jae Hyoun;Jo, Jinnam
    • Journal of Environmental Health Sciences
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    • v.42 no.4
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    • pp.280-292
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    • 2016
  • Objectives: The objective of this study was to build COD regression models for the Han River and evaluate water quality. Methods: Water quality data sets for the dry season (as of January) during a four-year period (2012-2015) were collected from the database of the Han River automatic water quality monitoring stations. Statistical techniques, including combined genetic algorithm-multiple linear regression (GA-MLR) were used to build five-descriptor COD models. Multivariate statistical techniques such as principal component analysis (PCA) and cluster analysis (CA) are useful tools for extracting meaningful information. Results: The $r^2$ of the best COD models provided significant high values (> 0.8) between 2012 and 2015. Total organic carbon (TOC) was a surrogate indicator for COD (as COD/TOC) with high reliability ($r^2=0.63$ in 2012, $r^2=0.75$ for 2013, $r^2=0.79$ for 2014 and $r^2=0.85$ for 2015). The ratios of COD/TOC were calculated as 2.08 in 2012, 1.79 in 2013, 1.52 and 1.45 in 2015, indicating that biodegradability in the water body of the Han River was being sustained, thereby further improving water quality. The BOD/COD ratio supported these findings. The cluster analysis revealed higher annual levels of microorganisms and phosphorous at stations along the Hangang-Seoul and Hantangang areas. Nevertheless, the overall water quality over the last four years showed an observable trend toward continuous improvement. These findings also suggest that non-point pollution control strategies should consider the influence of upstreams and downstreams to protect water quality in the Han River. Conclusion: This data analysis procedure provided an efficient and comprehensive tool to interpret complex water quality data matrices. Results from a trend analysis provided much important information about sources and parameters for Han River water quality management.

A Novel Hyperspectral Microscopic Imaging System for Evaluating Fresh Degree of Pork

  • Xu, Yi;Chen, Quansheng;Liu, Yan;Sun, Xin;Huang, Qiping;Ouyang, Qin;Zhao, Jiewen
    • Food Science of Animal Resources
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    • v.38 no.2
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    • pp.362-375
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    • 2018
  • This study proposed a rapid microscopic examination method for pork freshness evaluation by using the self-assembled hyperspectral microscopic imaging (HMI) system with the help of feature extraction algorithm and pattern recognition methods. Pork samples were stored for different days ranging from 0 to 5 days and the freshness of samples was divided into three levels which were determined by total volatile basic nitrogen (TVB-N) content. Meanwhile, hyperspectral microscopic images of samples were acquired by HMI system and processed by the following steps for the further analysis. Firstly, characteristic hyperspectral microscopic images were extracted by using principal component analysis (PCA) and then texture features were selected based on the gray level co-occurrence matrix (GLCM). Next, features data were reduced dimensionality by fisher discriminant analysis (FDA) for further building classification model. Finally, compared with linear discriminant analysis (LDA) model and support vector machine (SVM) model, good back propagation artificial neural network (BP-ANN) model obtained the best freshness classification with a 100 % accuracy rating based on the extracted data. The results confirm that the fabricated HMI system combined with multivariate algorithms has ability to evaluate the fresh degree of pork accurately in the microscopic level, which plays an important role in animal food quality control.

Genetic diversity, structure analysis and relationship in soybean mutants as revealed by TRAP marker

  • Kim, Dong-Gun;Lyu, Jae-Il;Lee, Min-Kyu;Kim, Jung Min;Hong, Min Jeong;Kim, Jin-Baek;Bae, Chang-Hyu;Kwon, Soon-Jae
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2018.10a
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    • pp.43-43
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    • 2018
  • Mutation breeding by radiation is useful for improving various crop species. Up to now, a total of 170 soybean mutant varieties have been released in the world, which is the second most registered varieties after rice. Despite the economic importance of soybean, there have been no TRAP marker system studies on genetic relationships between/among mutant lines. To develop a strategy of Mutant Diversity Pool (MDP) conservation, a study on the genetic diversity of 210 soybean mutant lines (8 cultivars and 202 mutants) was performed through a TRAP analysis. Sixteen primer combinations amplified a total of 551 fragments. The highest (84.00%) and lowest (32.35%) polymorphism levels were obtained with primers MIR157B + Ga5 and B14G14B + Ga3, respectively. The mean PIC values 0.15 varied among the primer combination ranging from 0.07 in B14G14B + Sal2 to 0.23 in MIR157B + Sa4. Phylogenetic, principal component analysis (PCA) and structure analysis indicated that the 210 lines belong to four groups based on the 16 combination TRAP markers. AMOVA showed 21.0% and 79.0% variations among and within the population, respectively. Overall, the genetic similarity of each cultivar and its mutants were higher than within other mutant populations. Our results suggest that the TRAP marker system may be useful for assessing the genetic diversity among soybean mutants and help to improve our knowledge of soybean mutation breeding.

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Metabolic Profiling of Eccentric Exercise-Induced Muscle Damage in Human Urine

  • Jang, Hyun-Jun;Lee, Jung Dae;Jeon, Hyun-Sik;Kim, Ah-Ram;Kim, Suhkmann;Lee, Ho-Seong;Kim, Kyu-Bong
    • Toxicological Research
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    • v.34 no.3
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    • pp.199-210
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    • 2018
  • Skeletal muscle can be ultrastructurally damaged by eccentric exercise, and the damage causes metabolic disruption in muscle. This study aimed to determine changes in the metabolomic patterns in urine and metabolomic markers in muscle damage after eccentric exercise. Five men and 6 women aged 19~23 years performed 30 min of the bench step exercise at 70 steps per min at a determined step height of 110% of the lower leg length, and stepping frequency at 15 cycles per min. $^1H$ NMR spectral analysis was performed in urine collected from all participants before and after eccentric exercise-induced muscle damage conventionally determined using a visual analogue scale (VAS) and maximal voluntary contraction (MVC). Urinary metabolic profiles were built by multivariate analysis of principal component analysis (PCA) and orthogonal partial least square-discriminant analysis (OPLS-DA) using SIMCA-P. From the OPLS-DA, men and women were separated 2 hr after the eccentric exercise and the separated patterns were maintained or clarified until 96 hr after the eccentric exercise. Subsequently, urinary metabolic profiles showed distinct trajectory patterns between men and women. Finally, we found increased urinary metabolites (men: alanine, asparagine, citrate, creatine phosphate, ethanol, formate, glucose, glycine, histidine, and lactate; women: adenine) after the eccentric exercise. These results could contribute to understanding metabolic responses following eccentric exercise-induced muscle damage in humans.

Coastal Eutrophication caused by Effluent from Aquaculture Ponds in Jeju (제주연안 육상양식장 밀집지역 주변해역의 영양염 과잉 요인)

  • Koh, Hyuk-Joon;Park, Sung-Eun;Cha, Hyung-Kee;Chang, Dae-Soo;Koo, Jun-Ho
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.19 no.4
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    • pp.315-326
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    • 2013
  • This study investigated the temporal-spatial distribution and variations in water quality parameters (temperature, salinity, pH, DO, COD, SPM, DIN, DIP, silicate, TN, TP, and chlorophyll-a) in the coastal area of Jeju, Korea, adjacent to aquaculture ponds (Aewol-ri, Haengwon-ri, Pyosun-ri, and Ilkwa-ri). Data were collected bimonthly from February 2010 to December 2011. A principal component analysis (PCA) identified three major factors controlling variations in water quality during the sampling period. Aquaculture effluent water led to large changes in nutrient levels. The highest nutrient values were observed during the investigation period. The relatively large increase in organic matter at the sampling stations coupled with sea area runoff events during the summer rainy period. Variation in chlorophyll-a concentration was mainly driven by meteorological factors such as air temperature and rainfall in the coastal areas of Aewol and Haengwon. In the coastal areas of Pyosun and Ilkwa, pollution was caused by anthropogenic factors such as discharge of aquaculture effluent water. High nutrient concentrations at the majority of the coastal stations indicate eutrophication of coastal waters, especially within a distance of 300 m and depth of 10m from drainage channels. Coastal eutrophication driven by aquaculture effluent may be harmful inshore. Events such as eutrophication may potentially influence water pollution in aquaculture ponds when seawater intake is detected because of aquaculture effluent water.

Spatio-temporal Distributions of Phytoplankton Community in the Coastal Waters of Central South Sea (CWoCSS), Korea (남해 중앙부 연안해역 식물플랑크톤 군집의 시·공간적 분포특성)

  • Yoon, Yang Ho
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.18 no.1
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    • pp.441-453
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    • 2017
  • This paper described the spatio-temporal distributions in the phytoplankton community, such as species composition, standing crops, and dominant species, from July 2012 to April 2013 in the Coastal Waters of Central South Sea (CWoCSS) of Korea. A total of 87 species of phytoplankton belonging to 52 genera were identified. In particular, diatoms and phytoflagellates comprised more than 62.1% and 37.9% of the total species, respectively. The phytoplankton cell density fluctuated with an annual mean of $7.9{\times}10^4cells{\cdot}L^{-1}$ between the lowest value of $1.0{\times}10^3cells{\cdot}L^{-1}$ in spring and the highest value of $4.5{\times}10^5cells{\cdot}L^{-1}$ in winter. The seasonal succession of the dominant species were Chaetoceros curvisetus, Ch. debilis in summer, Eucampia zodiacus in autumn, E. zodiacus, Thalassiosira curviseriata in winter and Skeletonema costatum -ls (like species), Leptocylindrus danicus in spring. According to principal component analysis, the phytoplankton community of the CWoCSS was characterized by the mixing rate between the freshwater inflow from Somjin River and the seawater of the South Sea, Korea.

Assessment on Diversity and Abundance of Butterflies in the Chunbul-dong Valley of the Soraksan by Line Transect Method (선조사법에 의한 설악산 천불동계곡 나비류의 다양성과 풍부도의 평가)

  • 권태성;박해철
    • Korean Journal of Environment and Ecology
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    • v.10 no.2
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    • pp.171-183
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    • 1997
  • Diversity, abundance, species distributions and distributions of two strategists (specialist and geceralist) of butterflies were investigated monthly from June 1996 to Oct. 1996 by line transect method in the Chunbul-dong valley from park gate to Yangpok Sanjang. The butterfly faunas of the eight regions in Kwangwon province, Gyunggi proavince and Pusan were also studied by the same method to assess diversity and abundance of butterfly community in the study region. The 18 butterfly species in 7 families were found in this study and the 48 butterfly species in 7 families were distributed in the study area from thes study and the other researches. The 30 butterfly species reported in the other studies were not found in this study and Kaniska canace L. of them would be to decrease in density. In the study area, the common species were Artogeia melete M., Neptis sappho P. and Libythea celtis F.. The representative Korean common butterflies such as Artogeia rapae L., Colias erate E. and Papillio xuthus L. were rare. The PCA(Principal Component Analysis) ordinations indicate that habitat disturbance by human would be major factor for butterfly community and species distribution. Difference was not found in diversity according to habitat disturbance. Abundance, however, was higher in the disturbed region than the undisturbed region. Compared with the other regions, abundance was greatly lower and diversity was slightly lower than that of the other regions. Two strategists exhibited different distribution patterns. Generalists were found more commonly in the disturbed region and widely distributed in both of the disturbed region and the undisturbed region than specialists.

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Spatial and Temporal Variations of Phytoplankton in Ch$\check{o}$nsu Bay (천수만 식물 플랑크톤의 공간적, 시간적 변화)

  • Shim, Jae Hyung;Yeo, Hwan Goo
    • 한국해양학회지
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    • v.23 no.3
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    • pp.130-145
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    • 1988
  • Spatial distribution and temporal variations of phytoplankton population were investigated in Ch$\check{o}$nsu Bay, the Korean western coast. Diurnal fluctuations of phytoplankton standing crop are associated with semidiurnal tidal cycle, as high concentration at low tide and low at high tide. In monthly variations of phytopolankton standing crop, the 1st peak occurrs in March and the 2nd one in August. The study area could be divided into two parts, outer bay and inner bay according to the physical and biological factors such as water temperature and salinity, and phytoplankton distribution patterns. The northern waters of the bay, however, may be affected by irregular fresh water influx through the lock of the dike. Because of the hydrographical differences among the surveyed stations, phytoplankton species succession patterns of each station have some differences. On the whole in this study area, Paralia sulcata and Skeletonema costatum are dominant species all the year round. However, except June, Paralia sulcata, a tychopelagic diatom is not dominant species at Station 6 (northern end of the bay). This seems to be caused by the fact that the waters of northern part of the bay is less turbulent than that of the outer bay. The result of principal component analysis (PCA) indicates that Ch$\check{o}$nsu Bay is normal coastal ecosystem where the environmental conditions are cycled in a year, and water temperature and nitrogenous nutrients such as nitrate, nitrite and ammonia are major factors to influence the annual cycle of environmental conditions.

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Financial Determinants of Credit Default Swap Spreads for Financial Institutions Headquartered in the Republic of Korea (국내 금융기관들의 신용부도스왑 스프레드에 대한 재무적 결정요인 분석)

  • Kim, Hanjoon
    • The Journal of the Korea Contents Association
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    • v.12 no.11
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    • pp.338-357
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    • 2012
  • This study investigated any possible financial attributes of the CDS spreads of a firm belonging to financial industries headquartered in the Republic of Korea. There were few studies on this issue, especially for the firms located in emerging capital markets. Coupled with the models such as a multiple regression and a principal component analysis(PCA), this research has identified that only two explanatory variables such as SLOPE and INTER3 (i.e. interaction effect between the BETA and the SLOPE) consistently showed their statistically significant influence on the CDS spreads through the 'selected' model without and with applying a stepwise regression procedure for the robustness. Given the rapid developments of sophisticated financial derivatives, this study may suggest a valuable insight to foreign and domestic investors to identify the possible determinants of CDS spreads at the firm- and/or the industry-level.