• Title/Summary/Keyword: PCA(Principal Component Analysis

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Characteristic Chemical Correlations in Nearby Star-forming Molecular Clouds

  • Yun, Hyeong-Sik;Lee, Jeong-Eun;Evans, Neal J. II;Offner, Stella;Heyer, Mark H.;Choi, Yunhee;Lee, Yong-Hee;Baek, Giseon;Choi, Minho;Kang, Hyunwoo;Tatematsu, Ken'ichi;Lee, Seokho;Yang, Yao-Lun;Gaches, Brandt;Chen, How-Huan
    • The Bulletin of The Korean Astronomical Society
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    • v.45 no.1
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    • pp.41.1-41.1
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    • 2020
  • Different molecular lines trace different physical environments (with various densities and temperatures) within molecular clouds (MCs). Therefore, multimolecular line observations are crucial to study the physical and chemical structures of MCs. We observed the Orion A and Ophiuchus clouds in six different molecular lines as a Taeduk Radio Astronomy Observatory Key Science Program (TRAO-KSP), "mapping Turbulent properties In star-forming MolEcular clouds down to the Sonic scale" (TIMES; PI: Jeong-Eun Lee). Here, we investigate the characteristic relations between the observed lines by performing the Principal Component Analysis (PCA). We also investigate the correlation between the line intensity distributions and the physical parameters, such as the gas column density and dust temperature. Finally, we will discuss how the correlations among different chemical tracers vary with the star formation environments.

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Using Machine Learning Techniques for Accurate Attack Detection in Intrusion Detection Systems using Cyber Threat Intelligence Feeds

  • Ehtsham Irshad;Abdul Basit Siddiqui
    • International Journal of Computer Science & Network Security
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    • v.24 no.4
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    • pp.179-191
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    • 2024
  • With the advancement of modern technology, cyber-attacks are always rising. Specialized defense systems are needed to protect organizations against these threats. Malicious behavior in the network is discovered using security tools like intrusion detection systems (IDS), firewall, antimalware systems, security information and event management (SIEM). It aids in defending businesses from attacks. Delivering advance threat feeds for precise attack detection in intrusion detection systems is the role of cyber-threat intelligence (CTI) in the study is being presented. In this proposed work CTI feeds are utilized in the detection of assaults accurately in intrusion detection system. The ultimate objective is to identify the attacker behind the attack. Several data sets had been analyzed for attack detection. With the proposed study the ability to identify network attacks has improved by using machine learning algorithms. The proposed model provides 98% accuracy, 97% precision, and 96% recall respectively.

Dimensionality Reduction Methods Analysis of Hyperspectral Imagery for Unsupervised Change Detection of Multi-sensor Images (이종 영상 간의 무감독 변화탐지를 위한 초분광 영상의 차원 축소 방법 분석)

  • PARK, Hong-Lyun;PARK, Wan-Yong;PARK, Hyun-Chun;CHOI, Seok-Keun;CHOI, Jae-Wan;IM, Hon-Ryang
    • Journal of the Korean Association of Geographic Information Studies
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    • v.22 no.4
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    • pp.1-11
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    • 2019
  • With the development of remote sensing sensor technology, it has become possible to acquire satellite images with various spectral information. In particular, since the hyperspectral image is composed of continuous and narrow spectral wavelength, it can be effectively used in various fields such as land cover classification, target detection, and environment monitoring. Change detection techniques using remote sensing data are generally performed through differences of data with same dimensions. Therefore, it has a disadvantage that it is difficult to apply to heterogeneous sensors having different dimensions. In this study, we have developed a change detection method applicable to hyperspectral image and high spat ial resolution satellite image with different dimensions, and confirmed the applicability of the change detection method between heterogeneous images. For the application of the change detection method, the dimension of hyperspectral image was reduced by using correlation analysis and principal component analysis, and the change detection algorithm used CVA. The ROC curve and the AUC were calculated using the reference data for the evaluation of change detection performance. Experimental results show that the change detection performance is higher when using the image generated by adequate dimensionality reduction than the case using the original hyperspectral image.

Factor Analysis of Biometric Traits of Kankrej Cows to Explain Body Conformation

  • Pundir, R.K.;Singh, P.K.;Singh, K.P.;Dangi, P.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.4
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    • pp.449-456
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    • 2011
  • Eighteen different biometric traits in 407 Kankrej cows from their breeding zone, i.e. Palanpur district of Gujarat, India, were recorded and analyzed by factor analysis to explain body conformation. The averages of body length, height at withers, height at shoulder, height at knee, heart girth, paunch girth, face length, face width, horn length, horn diameter, distance between horns, ear length, ear width, neck length, neck diameter, tail length with switch, tail length without switch and distance between hip bones were $123.44{\pm}0.37$, $124.49{\pm}0.28$, $94.68{\pm}0.30$, $38.2{\pm}0.14$, $162.56{\pm}0.56$, $178.95{\pm}0.70$, $44.09{\pm}0.10$, $15.91{\pm}0.05$, $42.47{\pm}0.53$, $26.07{\pm}0.19$, $13.34{\pm}0.08$, $31.24{\pm}0.12$, $16.10{\pm}0.05$, $50.63{\pm}0.18$, $73.21{\pm}0.32$, $111.62{\pm}0.53$, $89.34{\pm}0.34$ and $17.28{\pm}0.10\;cm$, respectively. The correlation coefficients between different traits ranged from -0.806 (horn diameter and distance between horns) to 0.815 (heart girth and paunch girth). Most of the correlations were positive and significant. Factor analysis with promax rotation with power 3 revealed three factors which explained about 66.02% of the total variation. Factor 1 described the cow body and explained 38.89% of total variation. The second factor described the front view/face of the cow and explained 19.68% of total variation. The third factor described the back of the cow and explained 7.44% of total variation. It was necessary to include some more variables for factor 3 to obtain a reliable estimate of the back view of the cow. The lower communities shown for distance between horns, horn diameter, ear width and neck diameter indicated that these traits did not contribute effectively to explaining body conformation and can be dropped from recording, whereas all other traits are important and needed to explain body conformation in Kankrej cows. The result suggests that principal component analysis (PCA) could be used in breeding programs with a drastic reduction in the number of biometric traits to be recorded to explain body conformation.

Stage specific transcriptome analysis of liver tissue from a crossbred Korean Native Pig (KNP × Yorkshire)

  • Kumar, Himansu;Srikanth, Krishnamoorthy;Park, Woncheol;Lee, Kyung-Tai;Choi, Bong-Hwan;Kim, Jun-Mo;Lim, Dajeong;Park, Jong-Eun
    • Journal of Biomedical and Translational Research
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    • v.19 no.4
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    • pp.116-124
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    • 2018
  • Korean Native Pig (KNP) has a uniform black coat color, excellent meat quality, white colored fat, solid fat structure and good marbling. However, its growth performance is low, while the western origin Yorkshire pig has high growth performance. To take advantage of the unique performance of the two pig breeds, we raised crossbreeds (KNP ${\times}$ Yorkshire to make use of the heterotic effect. We then analyzed the liver transcriptome as it plays an important role in fat metabolism. We sampled at two stages: 10 weeks and at 26 weeks. The stages were chosen to correspond to the change in feeding system. A total of 16 pigs (8 from each stage) were sampled and RNA sequencing was performed. The reads were mapped to the reference genome and differential expression analysis was performed with edgeR package. A total of 324 genes were found to be significantly differentially expressed (${\left|log2FC\right|}$ > 1 & q < 0.01), out of which 180 genes were up-regulated and 144 genes were down-regulated. Principal Component Analysis (PCA) showed that the samples clustered according to stages. Functional annotation of significant DEGs (differentially expressed genes) showed that GO terms such as DNA replication, cell division, protein phosphorylation, regulation of signal transduction by p53 class mediator, ribosome, focal adhesion, DNA helicase activity, protein kinase activity etc. were enriched. KEGG pathway analysis showed that the DEGs functioned in cell cycle, Ras signaling pathway, p53 signaling pathway, MAPK signaling pathway etc. Twenty-nine transcripts were also part of the DEGs, these were predominantly Cys2His2-like fold group (C2H2) family of zinc fingers. A protein-protein interaction (PPI) network analysis showed that there were three highly interconnected clusters, suggesting an enrichment of genes with similar biological function. This study presents the first report of liver tissue specific gene regulation in a cross-bred Korean pig.

At slaughtering and post mortem characteristics on Traditional market ewes and Halal market ewes in Tuscany

  • Sargentini, Clara;Tocci, Roberto;Campostrini, Matteo;Pippi, Eleonora;Iaconisi, Valeria
    • Journal of Animal Science and Technology
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    • v.58 no.9
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    • pp.35.1-35.10
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    • 2016
  • Background: The aim of this work was the comparison between the carcass and the meat ewes of the regional Traditional market and the Islamic religious (Halal) market. Methods: Thirty and 20 at the end of career traditional market and Halal market ewes were slaughtered following the EC (European Council, 2009) animal welfare guidelines. Live weight of ewes was taken and dressing percentage of carcasses was calculated. On every carcass zoometric measurement and the evaluation trough the EU grid rules were performed. On the Musculus longissimus thoracis of 12 Traditional market carcasses and 11 Halal market carcasses the physical-chemical and nutritional analysis were performed. Consumer tests for liking meat ewe were performed in order to find consumer's preference level for Traditional and Halal markets ewe meat. Considering as fixed factor the ewe meat market (Traditional and Halal), results were submitted to oneway Analysis of Variance (ANOVA) and to Principal Component Analysis (PCA). Results: The Halal market ewes have shown lower dressing percentages ($42.91{\pm}0.82$ vs $46.42{\pm}0.69$) and lower conformation score ($4.5{\pm}0.5$ vs $7.8{\pm}0.4$). The Halal market meat showed higher cooking loss in oven ($37.83{\pm}1.20$ vs $32.03{\pm}1.15%$), lesser Chroma value ($18.63{\pm}0.70$ vs $21.84{\pm}0.67$), and lesser Hue angle value ($0.26{\pm}0.02$ vs $0.34{\pm}0.02$). This product had also lower fat percentage ($4.2{\pm}0.4$ vs $7.09{\pm}0.4$). The traditional market meat had higher percentage in monounsatured fatty acids (MUFA) ($43.84{\pm}1.05$ vs $38.22{\pm}1.10$), while the Halal market meat had higher percentage in ${\omega}3$ poliunsatured fatty acids (PUFA) ($5.04{\pm}0.42$ vs $3.60{\pm}0.40$). The consumer test showed as the ewe meat was appreciate by the consumers. Conclusions: Both meat typologies have shown good nutritional characteristics. The traditional market meat had higher MUFA composition, and a better MUFA/satured fatty acids (SFA) ratio, while the Halal market meat had higher PUFA composition. These results were also supported by the PCA. The consumers preferred the traditional market meat.

Face Recognition using Eigenfaces and Fuzzy Neural Networks (고유 얼굴과 퍼지 신경망을 이용한 얼굴 인식 기법)

  • 김재협;문영식
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.41 no.3
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    • pp.27-36
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    • 2004
  • Detection and recognition of human faces in images can be considered as an important aspect for applications that involve interaction between human and computer. In this paper, we propose a face recognition method using eigenfaces and fuzzy neural networks. The Principal Components Analysis (PCA) is one of the most successful technique that have been used to recognize faces in images. In this technique the eigenvectors (eigenfaces) and eigenvalues of an image is extracted from a covariance matrix which is constructed form image database. Face recognition is Performed by projecting an unknown image into the subspace spanned by the eigenfaces and by comparing its position in the face space with the positions of known indivisuals. Based on this technique, we propose a new algorithm for face recognition consisting of 5 steps including preprocessing, eigenfaces generation, design of fuzzy membership function, training of neural network, and recognition. First, each face image in the face database is preprocessed and eigenfaces are created. Fuzzy membership degrees are assigned to 135 eigenface weights, and these membership degrees are then inputted to a neural network to be trained. After training, the output value of the neural network is intupreted as the degree of face closeness to each face in the training database.

Discrimination of African Yams Containing High Functional Compounds Using FT-IR Fingerprinting Combined by Multivariate Analysis and Quantitative Prediction of Functional Compounds by PLS Regression Modeling (FT-IR 스펙트럼 데이터의 다변량 통계분석을 이용한 고기능성 아프리칸 얌 식별 및 기능성 성분 함량 예측 모델링)

  • Song, Seung Yeob;Jie, Eun Yee;Ahn, Myung Suk;Kim, Dong Jin;Kim, In Jung;Kim, Suk Weon
    • Horticultural Science & Technology
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    • v.32 no.1
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    • pp.105-114
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    • 2014
  • We established a high throughput screening system of African yam tuber lines which contain high contents of total carotenoids, flavonoids, and phenolic compounds using ultraviolet-visible (UV-VIS) spectroscopy and Fourier transform infrared (FT-IR) spectroscopy in combination with multivariate analysis. The total carotenoids contents from 62 African yam tubers varied from 0.01 to $0.91{\mu}g{\cdot}g^{-1}$ dry weight (wt). The total flavonoids and phenolic compounds also varied from 12.9 to $229{\mu}g{\cdot}g^{-1}$ and from 0.29 to $5.2mg{\cdot}g^{-1}$dry wt. FT-IR spectra confirmed typical spectral differences between the frequency regions of 1,700-1,500, 1,500-1,300 and $1,100-950cm^{-1}$, respectively. These spectral regions were reflecting the quantitative and qualitative variations of amide I, II from amino acids and proteins ($1,700-1,500cm^{-1}$), phosphodiester groups from nucleic acid and phospholipid ($1,500-1,300cm^{-1}$) and carbohydrate compounds ($1,100-950cm^{-1}$). Principal component analysis (PCA) and subsequent partial least square-discriminant analysis (PLS-DA) were able to discriminate the 62 African yam tuber lines into three separate clusters corresponding to their taxonomic relationship. The quantitative prediction modeling of total carotenoids, flavonoids, and phenolic compounds from African yam tuber lines were established using partial least square regression algorithm from FT-IR spectra. The regression coefficients ($R^2$) between predicted values and estimated values of total carotenoids, flavonoids and phenolic compounds were 0.83, 0.86, and 0.72, respectively. These results showed that quantitative predictions of total carotenoids, flavonoids, and phenolic compounds were possible from FT-IR spectra of African yam tuber lines with higher accuracy. Therefore we suggested that quantitative prediction system established in this study could be applied as a rapid selection tool for high yielding African yam lines.

Metabolic comparison between standard medicinal parts and their adventitious roots of Cynanchum wilfordii (Maxim.) Hemsl. using FT-IR spectroscopy after IBA and elicitor treatment (IBA 및 elicitor 처리에 따른 백수오 기내 생산 부정근 및 표준품의 FT-IR 스펙트럼 기반 대사체 비교 분석)

  • Ahn, Myung Suk;So, Eun Jin;Jie, Eun Yee;Choi, So Yeon;Park, Sang Un;Moon, Byeong Cheol;Kang, Young Min;Min, Sung Ran;Kim, Suk Weon
    • Journal of Plant Biotechnology
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    • v.45 no.3
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    • pp.250-256
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    • 2018
  • To determine whether metabolite fingerprinting for whole cell extracts based on Fourier transform infrared spectroscopy (FT-IR) can be used to discriminate and compare metabolic equivalence, standard medicinal parts of Cynanchum wilfordii (Maxim.) Hemsl. and their adventitious roots were subjected to FT-IR. The principal component analysis (PCA) and partial least square discriminant analysis (PLS-DA) from FT-IR spectral data showed that whole metabolic pattern from the adventitious root of Cynanchum wilfordii was highly similar to its standard medicinal parts. These results clearly showed that mass proliferation of adventitious roots could be applied for the novel supply of standard medicinal parts of medicinal plants. Furthermore, FT-IR spectroscopy combined with multivariate analysis established in this study could be applied as an alternative tool for discriminating of whole metabolic equivalence from standard medicinal parts. Thus, it is proposed that these metabolic discrimination systems from the adventitious root of Cynanchum wilfordii could be applied for metabolic standardization of in vitro grown Cynanchum wilfordii.

Face recognition rate comparison with distance change using embedded data in stereo images (스테레오 영상에서 임베디드 데이터를 이용한 거리에 따른 얼굴인식률 비교)

  • 박장한;남궁재찬
    • Journal of the Institute of Electronics Engineers of Korea CI
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    • v.41 no.6
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    • pp.81-89
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    • 2004
  • In this paper, we compare face recognition rate by PCA algorithm using distance change and embedded data being input left side and right side image in stereo images. The proposed method detects face region from RGB color space to YCbCr color space. Also, The extracted face image's scale up/down according to distance change and extracts more robust face region. The proposed method through an experiment could establish standard distance (100cm) in distance about 30∼200cm, and get 99.05% (100cm) as an average recognition result by scale change. The definition of super state is specification region in normalized size (92${\times}$112), and the embedded data extracts the inner factor of defined super state, achieved face recognition through PCA algorithm. The orignal images can receive specification data in limited image's size (92${\times}$112) because embedded data to do learning not that do all learning, in image of 92${\times}$112 size averagely 99.05%, shows face recognition rate of test 1 99.05%, test 2 98.93%, test 3 98.54%, test 4 97.85%. Therefore, the proposed method through an experiment showed that if apply distance change rate could get high recognition rate, and the processing speed improved as well as reduce face information.