• Title/Summary/Keyword: PC-cluster system

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HPC(High Performance Computer) Linux Clustering for UltraSPARC(64bit-RISC processor) (UltraSPARC(64bit-RISC processor)을 위한 고성능 컴퓨터 리눅스 클러스터링)

  • 김기영;조영록;장종권
    • Proceedings of the IEEK Conference
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    • 2003.11b
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    • pp.45-48
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    • 2003
  • We can easily buy network system for high performance micro-processor, progress computer architecture is caused of high bandwidth and low delay time. Coupling PC-based commodity technology with distributed computing methodologies provides an important advance in the development of single-user dedicated systems. Lately Network is joined PC or workstation by computers of high performance and low cost. Than it make intensive that Cluster system is resembled supercomputer. Unix, Linux, BSD, NT(Windows series) can use Cluster system OS(operating system). I'm chosen linux gain low cost, high performance and open technical documentation. This paper is benchmark performance of Beowulf clustering by UltraSPARC-1K(64bit-RISC processor). Benchmark tools use MPI(Message Passing Interface) and NetPIPE. Beowulf is a class of experimental parallel workstations developed to evaluate and characterize the design space of this new operating point in price-performance.

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A Physical Data Design and Query Routing Technique of High Performance BLAST on E-Cluster (고성능 BLAST구현을 위한 E-Cluster 기반 데이터 분할 및 질의 라우팅 기법)

  • Kim, Tae-Kyung;Cho, Wan-Sup
    • Journal of the Korea Society of Computer and Information
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    • v.14 no.2
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    • pp.139-147
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    • 2009
  • BLAST (Basic Local Alignment Search Tool) is a best well-known tool in a bioinformatics area. BLAST quickly compares input sequences with annotated huge sequence databases and predicts their functions. It helps biologists to make it easy to annotate newly found sequences with reduced experimental time, scope, and cost. However, as the amount of sequences is increasing remarkably with the advance of sequencing machines, performance of BLAST has been a critical issue and tried to solve it with several alternatives. In this paper, we propose a new PC-Based Cluster system (E-Cluster), a new physical data design methodology (logical partitioning technique) and a query routing technique (intra-query routing). To verify our system, we measure response time, speedup, and efficiency for various sizes of sequences in NR (Non-Redundancy) database. Experimental result shows that proposed system has better speedup and efficiency (maximum 600%) than those o( conventional approaches such as SMF machines, clusters, and grids.

Analysis of Three-dimensional Nonaxisymmetric Spin-up by Using Parallel Computation (병렬계산에 의한 비축대칭 3차원 스핀업 유동해석)

  • Park, Jae-Hyoun;Choi, Yoon-Hwan;Suh, Yong-Kweon
    • Proceedings of the KSME Conference
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    • 2001.06e
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    • pp.512-517
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    • 2001
  • In this study, spin-up flows in a rectangular container are analysed by using three-dimensional computation. In the numerical computation, we use the parallel computer system of PC-cluster type. We compared our results with those obtained by two-dimensional computation. Effect of velocity and vorticity on the flow is studied. The result shows that two-dimensional solution is in good agreement with the 3-D result. Attention is given to the region where the 3-D flow is significant.

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Study on Fluid Flows in a Rectangular Container Subjected to a Background Rotation and a Rotational Oscillation (바탕회전하에 회전요동하는 직사각형용기 내의 유동에 관한 연구)

  • Park, Jae-Hyun;Suh, Yong-Kweon
    • Proceedings of the Korea Committee for Ocean Resources and Engineering Conference
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    • 2002.05a
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    • pp.215-219
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    • 2002
  • In this study, we show the numerical and the experimental results for fluid motions inside a rectangular container subjected to a background rotation added by a rotational oscillation. In the numerical computation, we used a parallel computer system of PC-cluster type. Attention is given to dependence of the flow patterns on the parameter change. It shows that the flow becomes in a periodic state at low Reynolds numbers and undergoes a transition to a chaotic motion at high Reynolds numbers. It also shows that the fluid motion tends to be depth-independent at ${\epsilon}$ up to 0.3 for Re lower than 5235.

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Experiments to build tera-scale cluster (Tera-scale cluster 개발을 위한 실험)

  • Hong, Jeong-Woo;Park, Hyung-Woo;Lee, Sang-San
    • Proceedings of the Korea Information Processing Society Conference
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    • 2001.10a
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    • pp.313-316
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    • 2001
  • At the end of 1999, the TeraCluster project in the KISTI Supercomputing Center was initiated to explore the possibility of PC clusters as a scientific computing platform to replace the Cray T3E system in KISTI by the year 2002. In order to understand whether an application is scalable to tera-flops sized cluster system, running test is inevitable. Extensive performance tests using well-known benchmarking codes with real applications' characteristics in them were carried out with different combinations of CPUs, system boards, network devices. The lessen learned shows the relationships between system performances and varied applications' different needs resulting in promises of How-Tos in building large scale cluster system. The 64/16 node clusters with Alpha EV6(466MHz), Pentium III(667 MHz) i inter-node network of Fast Ethernet. SCI[1] and Myrinet[2] were evaluated. More detailed specifications of the Linux clusters are described in Table 1.

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레이더 관측자료를 이용한 호남지방의 국지강수변화에 관한 수치모의

  • Park, Geun-Yeong;Lee, Sun-Hwan;Ryu, Chan-Su
    • 한국지구과학회:학술대회논문집
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    • 2005.02a
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    • pp.182-187
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    • 2005
  • The weather hazard by worldwide global warming rapidly increases year by year, and the damage becomes also enormous. especially, the damage by the random local severe rain in Korea is conspicuous. The forecast is difficult, because the random local severe rain arises by the complicated mechanism. However, local weather field in the Honam district where the weather hazard arises well is accurately grasped, and the systems that predict the local severe rain early are necessary. The purpose of this research is development of radar data assimilation observed at Jindo S-band radar. The accurate observational data assimilation system is required for meteorological numerical prediction of the region scale. Diagnostic analysis system LAPS(Local Analysis and Prediction System) developed by US FSL(Forecast Systems Laboratory) is adopted assimilation system of the Honam district forecasting system.

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Development of Simulator with Cluster System for Towing Fisheries

  • Park Myeong-Chul;Ha Seok-Wun
    • Journal of information and communication convergence engineering
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    • v.3 no.2
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    • pp.84-89
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    • 2005
  • Goal of this study is to implement 3-dimensional underwater appearance graphical display, fishery measured information display, sonar data representation and display, and 3-dimensional underwater appearance animation based on coefficient data of chaos behavior and fishing modeling of fishing gears from PC cluster system. In order to accomplish the goals of this study, it is essential to compose user interfacing and realistic description of image scenes in the towing-net fishery simulator, and techniques to describe sand cloud effects under water using particle systems are necessary. In this study, we implemented graphical representations and animations of the simulator by using OpenGL together with C routines.

An Efficient Integration of 3D User Interface Device with Tiled Display System in PC Cluster Environment (3차원 사용자 인터페이스 장비와 PC 클러스터 환경 타일 가시화 시스템의 효율적인 연동)

  • Oh, Min-Hwan;Kim, Kwang-Sik;Choi, Yun-Hyuk;Yang, Jin-Oh;Cho, Jin-Yeon
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.36 no.2
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    • pp.185-194
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    • 2008
  • In this paper, an efficient technique is proposed to integrate the 3D user interface with the tiled display system in PC cluster environment. In the developed 3D user interface software, various menus are provided to increase the user friendliness of the interface, including the several model-control-commands. To eliminate the noise produced from the 3D user interface devices, the box filtering algorithm is employed. Further, a communication splitting algorithm, which is a kind of asynchronous communication method, is proposed to reduce the motion delay between the 3D interface and the tiled display system, and its efficiency is validated through the benchmarking tests.

Performance Analysis of PC Cluster-based CC-NUMA System using Execution-driven Simulation (실행주도 시뮬레이션에 의한 PC 클러스터 기반 CC-NUMA 시스템 성능분석)

  • Ha, Chi-Jeong;Jeong, Sang-Hwa;O, Su-Cheol
    • Journal of KIISE:Computer Systems and Theory
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    • v.28 no.4
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    • pp.188-195
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    • 2001
  • 본 논문에서는 PC 클러스터 기반 CC-NUMA 시스템을 제안하고, 시뮬레이션을 통하여 성능을 분석하였다. PC 클러스터 기반 CC-NUMA 시스템은 PC의 PCI slot에 CC-NUMA 카드를 장착함으로써 구현되며 공유메모리, 네트워크 캐쉬, 네트워크 제어 모듈을 포함한다. CC-NUMA 시스템은 PCI 버스상에 존재하는 메모리를 공유대상으로 하며, 공유메모리와 네트워크 캐쉬사이의 일관성은 IEEE SCI 표준에 의해 유지된다. CC-NUMA 시스템을 시뮬레이션 하기 위해 실행주도 시뮬레이터인 Limes를 수정하여 사용하였으며, 캐쉬 일관성 유지 알고리즘으로 SCI의 typical set을 구현하였다. 또한 기존 시스템과의 비교를 위해서 네트워크 캐쉬를 활용하지 않는 Dolphin사의 PCI-SCI 카드에 기반한 NUMA 시스템을 시뮬레이션 하였다. CC-NUMA 시스템의 성능을 측정하기 위하여 다양한 실험을 수행하였으며, 실험결과 CC-NUMA 시스템이 NUMA 시스템에 비해서 성능향상이 우수함을 알 수 있었다. 또한, CC-NUMA 시스템이 최적의 성능을 발휘하는 파라미터의 값을 도출하였으며, 이를 CC-NUMA 시스템의 실제 구현에 반영하였다.

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Application of Parallel Processing System for free drop simulation of IT-related modules (IT 모듈의 자유 낙하 모사를 위한 병렬처리시스템의 적용)

  • Park Y.J.;Lee J.S.;Ko H.O.;Chang Y.S.;Choi J.B.;Kim Y.J.
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2006.05a
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    • pp.405-406
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    • 2006
  • Recently, the flat display modules such as plasma or TFT-LCD employ thin crystallized panels which are normally weak to high level transient mechanical energy inputs. As a result, anti-shock performance is one of the most important design specifications for TFT-LCD modules. However, most of large display module designs are generated based on engineers own experiences. Also, a large-scale analysis to evaluate complex material and structural behaviors is one of interesting topic in diverse engineering and scientific fields. The utilization of massively parallel processors has also been a recent trend of high performance computing. The objective of this paper is to introduce a parallel process system which consists of general purpose finite element analysis solver as well as parallelized PC cluster. The parallel processing system is constructed using thirty-two processing elements and the finite element program is developed by adopting hierarchical domain decomposition method. In order to verify the efficiency of the established system, an impact analysis on thin and complex sub-parts of flat display modules is performed. The evaluation results showed a good agreement with the corresponding reference solutions, and thus, the parallel process system seems to be a useful tool fur the complex structural analysis such as IT related products.

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