• Title/Summary/Keyword: Null distribution

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Estimation of p-values with Two Dimensional Null Distributions from Genomic Data Set

  • Yee, Jaeyong;Park, Mira
    • Journal of the Korean Data Analysis Society
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    • v.20 no.6
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    • pp.2711-2719
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    • 2018
  • When an observable is described by a single value, the statistic significance may be estimated by construction of null distribution using permutation and counting the portion of it that exceeds the observed value by chance. Genome-wide association study usually focuses on the association measure between a single or interacting genotypes with a single phenotype. However investigation of common genotypes associated simultaneously on multiple phenotypes may involve the observables that should be described with multiple numbers. Statistical significance for such an observable would involve null distribution in multiple dimensions. In this study, extension of the p-value estimation process using null distribution in one dimension has been sought that may be applicable to two dimensional case. Comparison of the position of points within the set of points they form has been proposed to use a positioning parameter inspired by the extension of the Kolmogorov-Smirnov statistic to two dimensions.

Where a Null C Fails to PF-merge

  • Hong, Sung-Shim
    • Language and Information
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    • v.9 no.2
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    • pp.69-83
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    • 2005
  • This paper discusses the distribution of a null complementizer C, as opposed to an overt counterpart 'that', presenting empirical support both for and against the PF-merge analysis of C proposed by Boscovic and Lasnik (2003, henceafter B&L) who in turn attribute to the proposal in Pesetsky (1992) and Halle & Marantz (1993). In Section I, as a background, I discuss B&L's proposal that a null complementizer C is a PF-affix which undergoes a PF-merger operation at the PF component. In Section 2, after a brief sketch of the distribution of a null C mostly in bare-relatives, I explore the possibility of extending B&L's analysis to accomodate the null C's in the bare-relative constructions. In Section 3, I argue that despite some empirical difficulties, B&L's analysis of a null C as a PF-affix can still be maintained, if Adverb Fronting is an operation to Spec-C position. Furthermore, I propose a rule - PF Spell-Out Constraint - to account for the C-trace (i.e. that-trace) effect in relative constructions. With the PF Spell-Out Constraint and B&L's PF-merge account, the distribution of a null C can better be analyzed.

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Distributions of the GSTM1 and GSTT1 Null Genotypes Worldwide are Characterized by Latitudinal Clines

  • Saitou, Marie;Ishida, Takafumi
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.1
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    • pp.355-361
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    • 2015
  • Background: Deletion types of genetic variants of glutathione S-transferase (GST) M1 and T1, the GSTM1 null and GSTT1 null which are risk factors for certain cancers, have been ubiquitously found in human populations but their worldwide distribution pattern is unclear. Materials and Methods: To perform a meta-analysis, a systematic search for the literature on GSTM1 and GSTT1 null genotypes was done to identify 63 reports for 81 human populations. Relationships between the GSTM1 and GSTT1 null genotype frequencies and the absolute latitude of 81 populations were tested by Spearman's rank correlation coefficient. Results: A significant positive correlation was detected between the GSTM1 null genotype frequency and the absolute latitude (r=0.28, p-value <0.05), whereas the GSTT1 null genotype frequency and absolute latitude showed a significant negative correlation (r= -0.41 p-value <0.01). There was no correlation between the frequencies of GSTM1 and GSTT1 null genotype in each population (r= -0.029, p-value=0.80). Conclusions: Latitudinal clines of the distribution of the GSTM1 and GSTT1 null genotypes may be attributed to the result of gene-environmental adaptation. No functional compensation between GSTM1 and GSTT1 was suggested by the lack of correlation between the null frequencies for GSTM1 and GSTT1.

INVARIANT NULL RIGGED HYPERSURFACES OF INDEFINITE NEARLY α-SASAKIAN MANIFOLDS

  • Mohamed H. A. Hamed;Fortune Massamba
    • Communications of the Korean Mathematical Society
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    • v.39 no.2
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    • pp.493-511
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    • 2024
  • We introduce invariant rigged null hypersurfaces of indefinite almost contact manifolds, by paying attention to those of indefinite nearly α-Sasakian manifolds. We prove that, under some conditions, there exist leaves of the integrable screen distribution of the ambient manifolds admitting nearly α-Sasakian structures.

GSTT1 Null Genotype Distribution in the Kumaun Region of Northern India

  • Bag, Arundhati;Upadhyay, Saloni;Jeena, Lalit M.;Pundir, Princi;Jyala, Narayan S.
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.1
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    • pp.87-89
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    • 2013
  • Glutathione S-transferases (GSTs) constitute a multigene family of multifunctional phase II metabolic enzymes. GSTT1, an important member of this group has a wide range of substrates including carcinogens. Total homozygous deletion or null genotype resulting in total lack of enzyme activity exists in populations for this enzyme. Since the null genotype may contribute to lower detoxification of carcinogens, this genotype is expected to increase cancer risk. The frequency of the GSTT1 null genotype is known to vary significantly among populations. However, little is known about its distribution in the hilly Kumaun region of northern India. Therefore, in this study, we determined the prevalence of the GSTT1 null polymorphism in the Kumaun popilation by conducting duplex PCR in 365 voluntary healthy individuals. The GSTT1 null genotype was detected in 18.4% of the individuals. Since GSTs play significant role in xenobiotic metabolism, the present data on GSTT1 genotype distribution should contribute in understanding genetic association with cancer risk in this understudied population.

The Null Distribution of the Likelihood Ratio Test for a Mixture of Two Gammas

  • Min, Dae-Hee
    • Journal of the Korean Data and Information Science Society
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    • v.9 no.2
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    • pp.289-298
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    • 1998
  • We investigate the distribution of likelihood ratio test(LRT) of null hypothesis a sample is from single gamma with unknown shape and scale against the alternative hypothesis a sample is from a mixture of two gammas, each with unknown scale and unknown (but equal) scale. To obtain stable maximum likelihood estimates(MLE) of a mixture of two gamma distributions, the EM(Dempster, Laird, and Robin(1977))and Modified Newton(Jensen and Johansen(1991)) algorithms were implemented. Based on EM, we made a simple structure likelihood equation for each parameter and could obtain stable solution by Modified Newton Algorithms. Simulation study was conducted to investigate the distribution of LRT for sample size n = 25, 50, 75, 100, 50, 200, 300, 400, 500 with 2500 replications. To determine the small sample distribution of LRT, I considered the model of a gamma distribution with shape parameter equal to 1 + f(n) and scale parameter equal to 2. The simulation results indicate that the null distribution is essentially invariant to the value of the shape parameter. Modeling of the null distribution indicates that it is well approximated by a gamma distribution with shape parameter equal to the quantity $0.927+1.18/\sqrt{n}$ and scale parameter equal to 2.16.

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Permutation-Based Test with Small Samples for Detecting Differentially Expressed Genes (극소수 샘플에서 유의발현 유전자 탐색에 사용되는 순열에 근거한 검정법)

  • Lee, Ju-Hyoung;Song, Hae-Hiang
    • The Korean Journal of Applied Statistics
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    • v.22 no.5
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    • pp.1059-1072
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    • 2009
  • In the analysis of microarray data with a small number of arrays, the most important task is the detection of differentially expressed genes by a significance test. For this purpose, one needs to construct a null distribution based on a large number of genes and one of the best way for constructing the null distribution for a small number of arrays is by means of permutation methods. In this paper we propose simple test statistics and permutation methods that are appropriate in constructing the null distribution. In a simulation study, we compare the null distributions generated by the proposed test statistics and permutation methods with the previous ones. With an example microarray data, differentially expressed genes are determined by applying these methods.

Asymptotic Distribution of a Nonparametric Multivariate Test Statistic for Independence

  • Um, Yong-Hwan
    • Journal of the Korean Data and Information Science Society
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    • v.12 no.1
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    • pp.135-142
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    • 2001
  • A multivariate statistic based on interdirection is proposed for detecting dependence among many vectors. The asymptotic distribution of the proposed statistic is derived under the null hypothesis of independence. Also we find the asymptotic distribution under the alternatives contiguous to the null hypothesis, which is needed for later use of computing relative efficiencies.

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A Study on the Delayed Factors in Evacuation Behavior in the Case of Fire Accidents in Highway Tunnels (고속도로 터널 내 화재사고 발생 시 대피행동 지연 요인에 관한 연구)

  • Jae-Hwan, Cho
    • Journal of the Korea Safety Management & Science
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    • v.24 no.4
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    • pp.143-148
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    • 2022
  • This paper attempted to analyze the correlation between the risk image of the evacuees in the tunnel and the variables that affect the evacuation behavior due to the closed feeling. As to whether there is a difference in the level of recognizing the tunnel risk image according to the distribution of jobs, the null hypothesis was rejected at the significance probability of 0.002, so it can be said that the level of recognition of the tunnel risk image varies depending on the job group. In the distribution difference between gender and tunnel risk image recognition level, the significance probability was 0.012, indicating that the null hypothesis was rejected, indicating that the tunnel risk recognition distribution according to gender was different. As a result of analyzing the distribution difference between the tunnel's closed feeling and the tunnel risk perception level, the significance probability was 0.001, and the null hypothesis was rejected, indicating that there was a difference in the tunnel risk image level.

On Asymptotic Analysis of the MUSIC Null-Spectrum (MUSIC Null-Spectrum의 점근적 해석)

  • 윤진선;김상엽;김선용;박성일;손재철;송익호;최진호
    • Proceedings of the Korean Institute of Communication Sciences Conference
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    • 1991.10a
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    • pp.115-118
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    • 1991
  • In this paper we derived the asymptotic distribution of the MUSIC null-spectrum, from which an exact expression of the asymptotic variance of the MUSIC null-spectrum can be obtained. From this result in addition an explicit expression of the normalized standard deviation (NSD) has been derived and it is shown that the NSD is affected by the number of sensors and the number of signals.