• Title/Summary/Keyword: MtDNA

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Mitochondrial DNA Sequence Variation of the Oriental Mole Cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae) in Korea

  • Kim, Ik-Soo;Cha, So-Young;Lee, Sun-Young;Kim, Seong-Ryul;Hwang, Jae-Sam;Li, Jianhong;Han, Yeon-Soo;Jin, Byung-Rae
    • International Journal of Industrial Entomology and Biomaterials
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    • v.14 no.2
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    • pp.107-112
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    • 2007
  • The mole crickets, Gryllotalpa, are insect pest distributed in the world. In Korea, G. orientalis was reported to occur, but previous ecological studies suggested the presence of two ecological types. To test this hypothesis, we sequenced a portion of mitochondrial (mt) genome from 48 G. orientali individuals collected over five Korean localities: Busan, Suwon, Okchon, Wonju, and Gangneung. From the sequence analysis, only two haplotypes were obtained, but the sequence divergence between the two haplotypes was 11 %, suggesting the presence of two distinct genetic groups in Korea. Although the population of Busan, Okchon, Wonju, and Gangneung was identified as a single haplotype, but that of Suwon was occupied by both hapotypes. Considering sequence divergence of other insect species occurring in Korea, the divergence estimate found between the two haplotypes seems to be too large to be considered as identical species. This result may suggest that the two differentiated haplotypes found in this study may reflect the previously reported two ecological types found in Suwon, Korea. To further understand the genetic divergence of the two phylogenetic groups, analysis of more variable regions of G. orientalis genome is required.

Distribution of Eggs and Larvae in Coastal Waters of Korea (우리나라 연안해역 난 및 자치어의 분포특성)

  • Baek, Jeong-Ik;Ji, Hwan-Sung;Yu, Hyo-Jae;Hwang, Kang-Seok;Kim, Doo-Nam
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.54 no.4
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    • pp.467-479
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    • 2021
  • The distribution and abundance of fish eggs and larvae were investigated from February to December 2020 along the coastal waters of Korea. The eggs and larvae were identified using the mitochondrial DNA cytochrome c oxidase subunit I (mtDNA COI) and 16s rRNA gene. During the study period, eggs of overall 45 taxa belonging to 26 families were collected and larvae of overall 39 taxa belonging to 23 families were collected. In Yeongil Bay, eggs of Engraulis japonicus, which accounted for 83.9% of the total population, was the most dominant species, followed by Sardinops sagax (4.0%), Repomucenus valenciennei (3.8%) and E. japonicus larvae, which accounted for 34.9% of the total population. These were followed by Sebastiscus marmoratus (31.0%). In Gomso Bay, E. japonicus eggs accounted for 61.7% of the total population, followed by Sillago japonica (14.0%), Johnius grypotus (8.8%) and Pholis fangi larvae, which accounted for 53.5% of the total population, followed by Ammodytes personatus (34.1%). In Jinhae Bay, E. japonicus eggs accounted for 86.0% of the total population, followed by Leiognathus nuchalis (4.1%), Konosirus punctatus (3.7%) and E. japonicus larvae, which accounted for 48.7% of the total population, followed by Parablennius yatabei (21.6%).

Bezafibrate prevents aging in in vitro-matured porcine oocytes

  • Kim, Ju-Yeon;Zhou, Dongjie;Cui, Xiang-Shun
    • Journal of Animal Science and Technology
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    • v.63 no.4
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    • pp.766-777
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    • 2021
  • Bezafibrate, a fibrate drug used as a lipid-lowering agent to treat hyperlipidemia, is a pan-agonist of peroxisome proliferator-activated receptor alpha. It can enhance mitochondrial fatty acid oxidation, oxidative phosphorylation, and mitochondrial biogenesis. After ovulation, oocytes may get arrested at the metaphase II (MII) stage until fertilization beyond optimal timing, which is termed as post-ovulatory aging. Post-ovulatory aging is a disease that degrades DNA, mitochondria, and oxidative system, and has a negative impact on embryo development and quality; however, the impact of bezafibrate during post-ovulatory aging has not been fully defined. In the present study, we assessed the ability of bezafibrate to prevent the progression of aging in in vitro conditions as well as the underlying mechanisms in pigs. An appropriate concentration of this drug (50 µM) was added, and then oxidative stress, reactive oxygen species downstream, mitochondrial biogenesis, and mitochondrial function were analyzed via immunofluorescence staining and real-time polymerase chain reaction. Bezafibrate significantly alleviated reactive oxygen species and ameliorated glutathione production simultaneously in oocytes and embryos. Moreover, it diminished H2A.X and attenuated CASPASE 3 expression produced by oxidative stress in oocytes and embryos. Furthermore, bezafibrate remarkably improved the mitochondrial function and blastocyst quality as well as markedly reduced the mitochondria/TOM20 ratio and mtDNA copy number. The elevated PARKIN level indicated that mitophagy was induced by bezafibrate treatment after post-ovulatory aging. Collectively, these results suggest that bezafibrate beneficially affects against porcine post-ovulatory oocyte aging in porcine by its antioxidant property and mitochondrial protection.

Molecular Identification of Anisakis Larvae Extracted by Gastrointestinal Endoscopy from Health Check-up Patients in Korea

  • Song, Hyemi;Jung, Bong-Kwang;Cho, Jaeeun;Chang, Taehee;Huh, Sun;Chai, Jong-Yil
    • Parasites, Hosts and Diseases
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    • v.57 no.2
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    • pp.207-211
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    • 2019
  • Anisakiasis is a zoonotic disease induced by anisakid nematodes, and endoscopic inspection is used for a diagnosis or remedy for it. Anisakis simplex, Anisakis physeteris, and Pseudoterranova decipiens had been reported to be the major species causing human infections, particularly, in Japan. However, in Korea, recent studies strongly suggested that Anisakis pegreffii is the major species of human infections. To support this suggestion, we collected anisakid larvae (n=20) from 20 human patients who were undergone gastrointestinal endoscopy at a health check-up center in Korea, and molecular identification was performed on the larvae using PCR-RFLP analysis and gene sequencing of rDNA ITS regions and mtDNA cox2. In addition, anisakid larvae (n=53) collected from the sea eel (Astroconger myriaster) were also examined for comparison with those extracted from humans. The results showed that all human samples (100%) were identified as A. pegreffii, whereas 90.7% of the samples from the sea eel were A. pegreffii with the remaining 9.3% being Hysterothylacium aduncum. Our study confirmed that A. pegreffii is the predominant species causing human anisakiasis in Korea, and this seems to be due to the predominance of this larval type in the fish (sea eels) popularly consumed by the Korean people. The possibility of human infection with H. aduncum in Korea is also suggested.

Molecular Identification and Morphological Description of Larva of the Previously Unrecorded Species Lepidotrigla longifaciata (Scopaenoidei: Triglidae) from the Southeastern Sea of Jeju Island of Korea (한국 제주도 남동부해역에서 첫 출현한 성대과(양볼락아목), Lepidotrigla longifaciata 자어의 분자동정 및 형태기재)

  • Jae-hoon Jang;Hwan-Sung Ji;Hyo-Jae Yu;Jin-Koo Kim
    • Korean Journal of Ichthyology
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    • v.36 no.1
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    • pp.101-106
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    • 2024
  • In May 2020, a single larval specimen (5.14 mm in total length) was collected from the southeastern sea of Jeju Island of Korea using bongo net. The specimen was identified as Lepidotrigla longifaciata based on mitochondrial DNA cytochrome c oxidase subunit I sequences. The morphological traits of the L. longifaciata larva are as follows: a long snout, a large mouth, large fan-shaped pectoral fins, and black melanophores scattered on the abdominal cavity and nape. We propose the new Korean name 'Gin-meo-ri-dal-jae' for this species, which was first discovered in Korea.

New Record of the Brassy Trevally, Caranx papuensis (Carangidae, Perciformes) in Jeju Island of Korea (한국 제주 연안에서 채집된 전갱이과(Carangdiae) 어류, Caranx papuensis의 첫 기록)

  • Hyeon-Jeong Kim;Do-Hyun Oh;Jin-Koo Kim
    • Korean Journal of Ichthyology
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    • v.36 no.2
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    • pp.199-206
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    • 2024
  • A single specimen belonging to the family Carangidae was first collected by angling in Seogwi-dong, Seogwipo-si, Jeju-do on 16 October 2023. This individual was identified as Caranx papuensis Alleyne & MacLeay based on morphological traits as following: lateral line gently curving below the first dorsal fin, presence of scaleless area on the thorax, and gill rakers 26. A total of 619 base pairs sequences of the mitochondrial DNA cytochrome c oxidase subunit I region was analyzed, and we found it closely matched to the Japanese C. papuensis (K2P distance=0.54%). We propose its new Korean name "Hwang-jul-jeon-gang-i" based on a yellow band along the lateral line.

Phylogenetic Analysis based on Metallothionein Gene Sequence of an Indigenous Species Pisidium (Neopisidium) coreanum in Korea (한국 고유종 Pisidium (Neopisidium) coreanum (산골조개) 의 metallothionein 유전자를 기초로 한 분자계통 분류학적 연구)

  • Baek, Moon-Ki;Lee, Jun-Seo;Kang, Se-Won;Lee, Jae-Bong;Kang, Hyun-Jung;Jo, Yong-Hun;Noh, Mi-Young;Han, Yeon-Soo;Choi, Sang-Haeng;Chae, Sung-Hwa;Park, Hong-Seog;Lee, Jun-Sang;Lee, Yong-Seok
    • The Korean Journal of Malacology
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    • v.25 no.2
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    • pp.153-160
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    • 2009
  • Pisidium (Neopisidium) coreanum is a freshwater snail and lives in spring water near mountain areas. Interestingly, this snail has been traditionally regarded as medicinal food, and thus has been used as folk remedies for healing broken bones. Recently, alpha classification on Pisidium (Neopisidium) coreanum through redescription has been conducted. However, not much attention has been made in beta classification. In this study, we performed the beta classification based on metallothionein (MT) genes found from various organisms. To this end, the complete cDNA sequences were obtained from the Expressed Sequence Tag (EST) sequencing project of Pisidium (Neopisidium) coreanum. The coding region (315 bp) encoded an amino acid sequence of 105 residues. The combined results from BLAST analyses, multiple sequence alignment and molecular phylogenetic study of Pc-MT gene indicate that Pisidium (Neopisidium) coreanum has similarity to freshwater bivalve such as Dreissena polymorpha (zebra mussel), Unio tumidus (swollen river mussel) and Crassostrea ariakensis (suminoe oyster).

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Genetic Homogeneity of the Korean Native Bumble Bee, Bombus ardens (Hymenoptera: Apidae), Detected by Mitochondrial COI Gene Sequences

  • Yoon, Hyung-Joo;Kim, Sam-Eun;Lee, Myeong-Lyeol;Kim, Iksoo;Bae, Jin-Sik;Sohn, Hung-Dae;Jin, Byung-Rae
    • International Journal of Industrial Entomology and Biomaterials
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    • v.6 no.1
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    • pp.63-68
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    • 2003
  • We investigated the sequence divergence of the geographic samples of the queen bumble bee (Bombus ardens) in Korea. A portion of mitochondrial COI gene sequences (423 bp) was analyzed for 44 individuals collected from seven localities. Sequence analysis resulted in four COI haplotypes with the maximum nucleotide divergence of only 0.5% (two bp). One haplotype (BA1) was dominant in all localities surveyed (86.4%). The finding of low sequence divergence and dominance of one haplotype appear to reflect, although limited, the life history of the B. ardens queens subjected to active dispersal and seasonal fluctuation in queen number.

Occurrence of longtail tuna (Thunnus tonggol) juvenile in Korean waters (백다랑어 (Thunnus tonggol) 치어의 국내 출현)

  • Yoon, Sang Chul;Choi, Kwang Ho;Jeong, Yeon Kyu;Lee, Dong Woo;Ryu, Jung Hwa
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.49 no.4
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    • pp.500-504
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    • 2013
  • A total of 24 juvenile specimens of Thunnus tonggol (5.45~7.26mm in total length) of the Sombridae were collected from the southeast sea of Jeju Island during 26~30 July, 2013. Twenty-four specimens identified T. tonggol have melanophores distributed on the 1st dorsal-fin rays, the dorsal of head and vetral side. Three individulas were identified using mitochondrial DNA cytochrome oxidase submit 1 (CO1) sequences (452 base pairs). All were identified as T. tonggol, their mtCO1 sequences being consistent with those of Thunnus tonggol (d=0.000), followed by Thunnus albacares (d=0.002) and Thunnus obesus (d=0.007).

Occurrence of Eggs and Larvae of Blackfin Flounder Glyptocephalus stelleri (Pleuronectidae, Pisces) off Wangdol-cho, East Sea (동해 왕돌초 주변해역에서 기름가자미 Glyptocephalus stelleri (가자미과, 어상강) 어란과 자어 출현)

  • Lee, Hae Won;Lee, Soo Jeong;Yang, Jae Hyung;Lee, Jae Bong;Cha, Hyung Kee;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.5
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    • pp.654-658
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    • 2014
  • We report the first identification of a spawning ground of the blackfin flounder Glyptocephlaus stelleri near the Wangdol-cho sea mountains, located in the southern East Sea. Eggs and larval fish of G. stelleri were collected during April and June, 2014, when an abundance of eggs was found in the southern area of Wangdol-cho. Our findings suggest that G. stelleri prefers to spawn in the vicinity of the off-shore sea mountains, where the temperature is between 10 and $12^{\circ}C$ and the water depth is 100 m, rather than inshore.