• Journal of Soil and Groundwater Environment
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• v.17 no.6
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• pp.23-32
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• 2012

This study was conducted to monitor microbial species dynamics within the aquifer due to long term operation of geothermal heat pump system. The species were identified by molecular biological methods of 16S rDNA. Groundwater sample was collected from both open (S region) and closed geothermal recovery system (J region) along with the control. J measured and control as well as S measured found Ralstonia pickettii as dominant species at year 2010. In contrast, Rhodoferax ferrireducens was dominantly observed for the control of S. In 2011, Sediminibacterium sp. was universely identified as the dominant species regardless of the monitoring places and type of sample, i.e., measured or control. The difference in the dynamics between the measured and the control was not critically observed, but annual variation was more strikingly found. It reveals that possible environmental changes (e.g. ORP and DO) due to the operation of geothermal heat recovery system in aquifer could be more exceedingly preceded to differentiate annual variation of microbial species rather than positional differences.

• The Korean Journal of Ecology
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• v.19 no.1
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• pp.93-104
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• 1996

Ecological approach to conservation of Korea's National Parks (KNP) was reviewed. Four hundred twenty five reports on 15 national parks for 80 years (1915~1994) were analyzed in consideration of phytocoenotic information such as flora, plant community and landscape. Total species was recorded as 157 familles, 752 genera, and 2,369 species (64.3% of Korean flora), in which is included only 75 species of the protected plant species designated by the Ministry of EnvironMent. Occurrence patterns of plant species in national parks were quite similar to one another, but those of plant community were rather unique. Seventy-four of 97 plant communities were reported in only one of 15 national parks, which might be regarded as an endemic or local vegetetation type. These facts are far different from actual status of the KNP＇s ecosystem, which indicate that not only original data in previous reports are less informative, but also tools of investigation and description are too subjective, and thus these can never afford to monitor the ecosystem. From the correlation analysis between 10 ecological characteristics, the following results were obtained: (1) the species richness was positively associated with the area of national park, (2) the number of visitors was related to landscape diversity, (3) occurrence of the designated species was closely related to the vegetation diversity. Numerical analysis (cluster analysis and ordination) using dissimilarity ratio by ecological characteristics divided 15 national parks into 4 groups. The first group, composed of national parks of Chirisan, $S\v{o}laksan$, Sokrisan, Hallasan, $T\v{o}kyusan$, Odaesan, and Sobaeksan, is recognized as the best national parks in terms of ecological conservation values. Nevertheless, they have been faced with the threat of visitor stress. This study will contribute to the establishment of strategy for appropriate conservation and sustainable use of KNP.

• Journal of the Korean Wood Science and Technology
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• v.46 no.6
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• pp.735-747
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• 2018

Radon radiation exposures in home have been posed as a potential cancer hazard. This research aims to present the basic data of the indoor radon concentration level by examining the radon exhalation rates of wood species. Radon exhalation rates from five commonly used wood species in Korean wood building construction were measured with Continuous Radon Monitor (CRM), Model 1028 (Sun Nuclear Co., USA) using the Closed Chamber Method (CCM). The mass exhalation rate was observed to vary from $0.00089Bq{\cdot}kg^{-1}{\cdot}h^{-1}$ to $0.00181Bq{\cdot}kg^{-1}{\cdot}h^{-1}$, whereas the surface exhalation rate was observed to be $0.00677-0.01517Bq{\cdot}m^{-2}{\cdot}h^{-1}$. The radon exhalation rate of Quercus accutissima Carruth (white oak) which has the highest density showed the highest figure among the five wood species, on the other hand, the rest of four species showed similar results which were similar to the radon exhalation rates of wood in the U.S.A. and Canada. The average of the concentration measured by the CCM represented well up to the second half-life period (7.7 days). Because result of these small quantities seems to indicate that radon exhalation from the tested wood species has almost negligible impact, the main culprit of the high indoor radon concentration is clearly derived from the background of surrounding wood house. Therefore, as a safety precaution, infrastructures made of wood materials should be designed with the consideration of influx of radon and built accordingly. Furthermore, it is highly desirable that wood will be needed to use for furniture and interior finishing material in indoor environment.

• Journal of Microbiology and Biotechnology
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• v.29 no.4
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• pp.548-557
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• 2019

Staphylococcus species have a ubiquitous habitat in a wide range of foods, thus the ability to identify staphylococci at the species level is critical in the food industry. In this study, we performed rapid identification of Staphylococcus species using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight mass spectrometry (MALDI-TOF MS). MALDI-TOF MS was evaluated for the identification of Staphylococcus reference strains (n = 19) and isolates (n = 96) from various foods with consideration for the impact of sample preparation methods and incubation period. Additionally, the spectra of isolated Staphylococcus strains were analyzed using principal component analysis (PCA) and a main spectra profile (MSP)-based dendrogram. MALDI-TOF MS accurately identified Staphylococcus reference strains and isolated strains: the highest performance was by the EX method (83.3~89.5% accuracy) at species level identification (EDT, 70.3~78.9% accuracy; DT, less than 46.3~63.2% accuracy) of 24-h cultured colonies. Identification results at the genus level were 100% accurate at EDT, EX sample preparation and 24-h incubation time. On the other hand, the DT method showed relatively low identification accuracy in all extraction methods and incubation times. The analyzed spectra and MSP-based dendrogram showed that the isolated Staphylococcus strains were characterized at the species level. The performance analysis of MALDI-TOF MS shows the method has the potential ability to discriminate between Staphylococcus species from foods in Korea. This study provides valuable information that MALDI-TOF MS can be applied to monitor microbial populations and pathogenic bacteria in the food industry thereby contributing to food safety.

• Parasites, Hosts and Diseases
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• v.27 no.4
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• pp.249-252
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• 1989

Fibricola cratera is a strigeoid trematode indigenous to North America that, heretofore, was known only to infect wild mammals. Herein, it is reported that an experimental inoculation of a human volunteer produced a patellt infection that lasted 40 months. Symptoms of epigastric discomfort, loose stools and flatulence occurred over the first year of infection and ameliorated thereafter. Eggs per gram of stool were low (${\leq}2$) throughout the course of infection and were not detected by the standard technique of formalin-ether concentration. To monitor infection, the entire stool sample was examined each month after sieving through No. 10 (pore size 2 mm) and 100 (pore size $145{\;}{\mu\textrm{m}}$) sieves and collecting eggs on a No. 325 (pore size $45{\;}{\mu\textrm{m}}$) sieve. This is the first report of a North American strigeoid trematode capable of maturing in a human and is only the second species of strigeoid known to do so. The other species is F. seoulensis which has been implicated in 26 human infections in Korea.

• ALGAE
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• v.25 no.3
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• pp.141-153
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• 2010

Seagrass epiphyte blooms potentially have important economic and ecological consequences in Tampa Bay, one of the Gulf of Mexico's largest estuaries. As part of a Tampa Bay pilot study to monitor the impact of environmental stresses, precise characterization of epiphyte diversity is required for efficient management of affected resources. Thus, epiphyte diversity may be used as a rational basis for assessment of ecosystem health. In May 2001, epiphytic species encompassing green, brown and red macroalgae were manually collected from dense and sparse seagrass beds of Thalassia testudinum and Syringodium filiforme. A total of 20 macroalgal epiphytes, 2 Chlorophyta, 2 Phaeophyta, and 16 Rhodophyta, were found on T. testudinum and S. filiforme seagrass at the four sampling sites (Bishop Harbor, Cockroach Bay, Feather Sound, and Mariposa Key). The Rhodophyta, represented by 16 species, dominated the numbers of species. Among them, the thin-crusted Hydrolithon farinosum was the most commonly found epiphyte on seagrass leaves. Species number, as well as species frequency of epiphytes, is higher at dense seagrass sites than sparse seagrass sites. Four attachment patterns of epiphytes can be classified according to cortex and rhizoid development: 1) creeping, 2) erect, 3) creeping & erect, and 4) erect & holding. The creeping type is characterized by an encrusting thallus without a rhizoid or holdfast base. Characteristics of the erect type include a filamentous thallus with or without a cortex, and a rhizoid or holdfast base. The creeping and erect type is characterized by a filamentous thallus with a cortex and rhizoid. A filamentous thallus with a cortex, holdfast base, and host holding branch is characteristics of the erect and holdfast attachment type. This study characterized each species found on the seagrass for epiphyte identification.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.51 no.1
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• pp.16-25
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• 2015

Visual census and hydro-acoustic survey was carried out at Ulju small scale marine ranching area (MRA) to estimate demersal fish aggregations on September and November 2013. In this hydro-acoustic survey, the authors combined an image sonar with a scientific echo sounder to monitor an underwater situation and compare two acoustic data. Consequently, visual census survey was useful to estimate fish species composition for hydro-acoustic survey, because it is easy to identify aggregated fish species and overcome limits on a fishing depth and ability of an conventional fishing gear like a bottom gill-net or a fish trap at marine ranching area. Mean fish density was estimated as $0.757g/m^2$ on September and $0.219g/m^2$ on November and Fish abundance was finally calculated as 1.51ton (coefficient of variation, CV=13.1%) on September and 0.44ton (CV=47.7%) on November, respectively. Hydro-acoustic survey combined with the image sonar was useful to monitor fish aggregations and estimate fish stocks around artificial reefs at shallow coastal MRA. We were able to easily identify the underwater structures like an artificial reef and a fishing rope as well as fish aggregations from image sonar data. Therefore, the method was effective to separate unwanted echo signals in acoustic data of scientific echo sounder.

• Environmental Analysis Health and Toxicology
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• v.29
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• pp.2.1-2.7
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• 2014

Objectives Heat shock protein 90 (HSP90) is a highly conserved molecular chaperone important in the maturation of a broad spectrum of protein. In this study, an HSP90 gene was isolated from Asian paddle crab, Charybdis japonica, as a bio-indicator to monitor the marine ecosystem. Methods This work reports the responses of C. japonica HSP90 mRNA expression to cellular stress by endocrine disrupting chemicals (EDCs), such as bisphenol A (BPA) and 4-nonylphenol (NP) using real-time. reverse transcription polymerase chain reaction. Results The deduced amino acid sequence of HSP90 from C. japonica shared a high degree of homology with their homologues in other species. In a phylogenetic analysis, C. japonica HSP90 is evolutionally related with an ortholog of the other crustacean species. The expression of HSP90 gene was almost distributed in all the examined tissues of the C. japonica crab but expression levels varied among the different body parts of the crabs. We examined HSP90 mRNA expression pattern in C. japonica crabs exposed to EDCs for various exposure times. The expression of HSP90 transcripts was significantly increased in C. japonica crabs exposed to BPA and NP at different concentrations for 12, 24, 48 and 96 hours. The mRNA expression of HSP90 gene was significantly induced in a concentration- and time-dependent manner after BPA or NP exposures for 96 hours. Conclusions Taken together, expression analysis of Asian paddle crab HSP90 gene provided useful molecular information about crab responses in stress conditions and potential ways to monitor the EDCs stressors in marine environments.

• Korean Journal of Ecology and Environment
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• v.54 no.3
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• pp.209-220
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• 2021

Pacific herring, Clupea pallasii, a keystone species with significant ecological and commercial importance, is declining globally throughout much of its range. While traditional fishing equipment methods remain limited, new sensitive and rapid detection methods should be developed to monitor fisheries resources. To monitor the presence and quantity of C. pallasii from environmental DNA (eDNA) extracted from seawater samples, a pair of primers and a TaqMan^® probe specific to this fish based on mitochondrial cytochrome b (COB) sequences were designed for the real-time PCR (qPCR) assay. The combination of our molecular markers showed high specificity in the qPCR assay, which affirmed the success of presenting a positive signal only in the C. pallasii specimens. The markers also showed a high sensitivity for detecting C. pallasii genomic DNA in the range of 1 pg~100 ng rxn^-1 and its DNA plasmid containing COB amplicon in the range of 1~100,000copies rxn^-1, which produced linear standard calibration curves (r²=0.99). We performed a qPCR assay for environmental water samples obtained from 29 sampling stations in the southeastern coastal regions of South Korea using molecular markers. The assay successfully detected the C. pallasii eDNA from 14 stations (48.2%), with the highest mean concentration in Jinhae Bay with a value of 76.09±18.39 pg L^-1 (246.20±58.58 copies L^-1). Our preliminary application of molecular monitoring of C. pallasii will provide essential information for efficient ecological control and management of this valuable fisheries resource.

• Journal of Environmental Science International
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• v.19 no.11
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• pp.1323-1336
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• 2010

This study was carried out to determine marine environments and phytoplankton community around Mokpo harbour on March to November during the period of 2004-2009. The remarkable fluctuations of marine environments were shown around Mokpo harbour depending on monthly and yearly. Among seasons, summer was a great that was associated with extremely releasing the freshwater from Youngsan River Weir, contributing to effect the fluctuations of water quality. Nevertheless of monthly and yearly, the molecular ratio of N:P was always shown in above 16 that was mainly attributed to freshwater discharge on March to November. This indicates that phosphorus playes an important role in limiting factor as growth in phytoplankton. During this study, Skeletonema costatum was found to be richer than the other groups of diatoms in terms of abundance and species number. Mokpo harbour, with the presence of a narrow avenue for exchange with offshore waters, has limited growth in phytoplankton, but this species is able to well adapt and fast grow under even high level of suspended solid and low intensity of light compared with other species. The discharge of freshwater is associated with significantly fluctuation of marine environments in this region, but it does not affect the quantitative and qualitative distribution of phytoplankton. It is necessary to persistently monitor based on water quality and phytoplankton community.