• Communications for Statistical Applications and Methods
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• v.28 no.2
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• pp.135-150
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• 2021

We propose principal differential analysis based classification methods. Computations of squared multiple correlation function (RSQ) and principal differential analysis (PDA) scores are reviewed; in addition, we combine principal differential analysis results with the logistic regression for binary classification. In the numerical study, we compare the principal differential analysis based classification methods with functional principal component analysis based classification. Various scenarios are considered in a simulation study, and principal differential analysis based classification methods classify the functional data well. Gene expression data is considered for real data analysis. We observe that the PDA score based method also performs well.

• Communications for Statistical Applications and Methods
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• v.22 no.3
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• pp.265-276
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• 2015

In this paper, we propose hierarchical cluster analysis and multidimensional scaling for joint distribution valued data. Information technology is increasing the necessity of statistical methods for large and complex data. Symbolic Data Analysis (SDA) is an attractive framework for the data. In SDA, target objects are typically represented by aggregated data. Most methods on SDA deal with objects represented as intervals and histograms. However, those methods cannot consider information among variables including correlation. In addition, objects represented as a joint distribution can contain information among variables. Therefore, we focus on methods for joint distribution valued data. We expanded the two well-known exploratory methods using the dissimilarities adopted Hall Type relative projection index among joint distribution valued data. We show a simulation study and an actual example of proposed methods.

• Communications for Statistical Applications and Methods
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• v.8 no.1
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• pp.281-289
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• 2001

The continuous growth in the use of the World Wide Web is creating the data with very large scale and different types. Analyzing such data can help to determine the life time value of users, evaluate the effectiveness of web sites, and design marketing strategies and services. In this paper, we propose some analysis methods for web data and present an example of a prototypical web data analysis.

• The Korean Journal of Applied Statistics
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• v.22 no.1
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• pp.89-106
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• 2009

There have been many new advances in the development of improved clustering methods for microarray data analysis, but traditional clustering methods are still often used in genomic data analysis, which maY be more due to their conceptual simplicity and their broad usability in commercial software packages than to their intrinsic merits. Thus, it is crucial to assess the performance of each existing method through a comprehensive comparative analysis so as to provide informed guidelines on choosing clustering methods. In this study, we investigated existing clustering methods applied to microarray data in various real scenarios. To this end, we focused on how the various methods differ, and why a particular method does not perform well. We applied both internal and external validation methods to the following eight clustering methods using various simulated data sets and real microarray data sets.

• Journal of Korean Institute of Industrial Engineers
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• v.42 no.4
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• pp.249-255
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• 2016

Recently, transaction data is accumulated everywhere very rapidly. Association analysis methods are usually applied to analyze transaction data, but the methods have several problems. For example, these methods can only consider one-way relations among items and cannot reflect domain knowledge into analysis process. In order to overcome defect of association analysis methods, we suggest a transaction data analysis method based on probabilistic graphical model (PGM) in this study. The method we suggest has several advantages as compared with association analysis methods. For example, this method has a high flexibility, and can give a solution to various probability problems regarding the transaction data with relationships among items.

• Communications for Statistical Applications and Methods
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• v.19 no.4
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• pp.559-569
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• 2012

Compositional data consist of compositions that are non-negative vectors of proportions with the unit-sum constraint. In disciplines such as petrology and archaeometry, it is fundamental to statistically analyze this type of data. Aitchison (1983) introduced a log-contrast principal component analysis that involves logratio transformed data, as a dimension-reduction technique to understand and interpret the structure of compositional data. However, the analysis is not usable when zero values are present in the data. In this paper, we introduce 4 possible methods to reduce the dimension of compositional data with zero values. Two real data sets are analyzed using the methods and the obtained results are compared.

• Genomics & Informatics
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• v.17 no.4
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• pp.41.1-41.12
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• 2019

Survival analysis mainly deals with the time to event, including death, onset of disease, and bankruptcy. The common characteristic of survival analysis is that it contains "censored" data, in which the time to event cannot be completely observed, but instead represents the lower bound of the time to event. Only the occurrence of either time to event or censoring time is observed. Many traditional statistical methods have been effectively used for analyzing survival data with censored observations. However, with the development of high-throughput technologies for producing "omics" data, more advanced statistical methods, such as regularization, should be required to construct the predictive survival model with high-dimensional genomic data. Furthermore, machine learning approaches have been adapted for survival analysis, to fit nonlinear and complex interaction effects between predictors, and achieve more accurate prediction of individual survival probability. Presently, since most clinicians and medical researchers can easily assess statistical programs for analyzing survival data, a review article is helpful for understanding statistical methods used in survival analysis. We review traditional survival methods and regularization methods, with various penalty functions, for the analysis of high-dimensional genomics, and describe machine learning techniques that have been adapted to survival analysis.

• The Korean Journal of Applied Statistics
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• v.24 no.6
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• pp.1103-1113
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• 2011

Gene expression data is obtained through many stages of an experiment and errors produced during the process may cause missing values. Due to the distinctness of the data so called 'small n large p', genes have to be selected for statistical analysis, like classification analysis. For this reason, imputation and gene selection are important in a microarray data analysis. In the literature, imputation, gene selection and classification analysis have been studied respectively. However, imputation, gene selection and classification analysis are sequential processing. For this aspect, we compare the performance of classification methods after imputation and gene selection methods are applied to microarray data. Numerical simulations are carried out to evaluate the classification methods that use various combinations of the imputation and gene selection methods.

• Journal of the Korean Operations Research and Management Science Society
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• v.38 no.2
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• pp.65-73
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• 2013

In the simulation output analysis, bootstrap method is an applicable resampling technique to insufficient data which are not significant statistically. The moving block bootstrap, the stationary bootstrap, and the threshold bootstrap are typical bootstrap methods to be used for autocorrelated time series data. They are nonparametric methods for stationary time series data, which correctly describe the original data. In the simulation output analysis, however, we may not use them because of the non-stationarity in the data set caused by the trend such as increasing or decreasing. In these cases, we can get rid of the trend by differencing the data, which guarantees the stationarity. We can get the bootstrapped data from the differenced stationary data. Taking a reverse transform to the bootstrapped data, finally, we get the pseudo-samples for the original data. In this paper, we introduce the applicability of bootstrap methods to the time series data having trend, and then verify it through the statistical analyses.

• Journal of the Korean Data and Information Science Society
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• v.18 no.4
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• pp.1057-1064
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• 2007

From the view of natural language process, quantitative linguistic analysis is a linguistic study relying on statistical methods, and is a mathematical linguistics in an attempt to discover various linguistic characters by interpreting linguistic facts quantitatively through statistical methods. In this study, I would like to introduce a quantitative linguistic analysis method utilizing a computer and statistical methods on literary works. I also try to introduce a use of SynKDP, a synthesized Korean data process, and show the relations between distribution of linguistic unit elements which are used by the hero in a novel #Sassinamjunggi# and theme analysis on literary works.