• Title/Summary/Keyword: Medical Image Segmentation

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Automatic Meniscus Segmentation from Knee MR Images using Multi-atlas-based Locally-weighted Voting and Patch-based Edge Feature Classification (무릎 MR 영상에서 다중 아틀라스 기반 지역적 가중 투표 및 패치 기반 윤곽선 특징 분류를 통한 반월상 연골 자동 분할)

  • Kim, SoonBeen;Kim, Hyeonjin;Hong, Helen;Wang, Joon Ho
    • Journal of the Korea Computer Graphics Society
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    • v.24 no.4
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    • pp.29-38
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    • 2018
  • In this paper, we propose an automatic segmentation method of meniscus in knee MR images by automatic meniscus localization, multi-atlas-based locally-weighted voting, and patch-based edge feature classification. First, after segmenting the bone and knee articular cartilage, the volume of interest of the meniscus is automatically localized. Second, the meniscus is segmented by multi-atlas-based locally-weighted voting taking into account the weights of shape and intensity distribution in the volume of interest of the meniscus. Finally, to remove leakage to the collateral ligaments with similar intensity, meniscus is refined using patch-based edge feature classification considering shape and distance weights. Dice similarity coefficient between proposed method and manual segmentation were 80.13% of medial meniscus and 80.81 % for lateral meniscus, and showed better results of 7.25% for medial meniscus and 1.31% for lateral meniscus compared to the multi-atlas-based locally-weighted voting.

Detection of Mammographic Microcalcifications by Pattern Matching (Pattern Matching을 이용한 유방영상의 미세 석회화 검출)

  • Yang, Y.S.;Kim, E.K.;Kim, D.W.
    • Proceedings of the KOSOMBE Conference
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    • v.1997 no.05
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    • pp.68-71
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    • 1997
  • The early detection of brest cancer is clearly a key ingredient for any strategy designed to reduce breast cancer mortality. Microcalcification(MCC) is one of the primary signatures to discriminate between normal and cancerous tissue. The detection and locating procedures can be automated by digital image processing, however, MCCs have various sizes, shapes, and intensity levels in film images, so it is difficult to find accurate locations and sizes. Firstly, we made quantitative analysis for many characteristic features of mammograms that can be used to segment MCCs from normal tissues. Secondly, we developed algorithms proper to segmentation like pattern matching. The performance was evaluated with TP and FP rates.

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An ACA-based fuzzy clustering for medical image segmentation (적응적 개미군집 퍼지 클러스터링 기반 의료 영상분할)

  • Yu, Jeong-Min;Jeon, Moon-Gu
    • Proceedings of the Korea Information Processing Society Conference
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    • 2012.11a
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    • pp.367-368
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    • 2012
  • Possibilistic c-means (PCM) 알고리즘은 fuzzy c-means (FCM) 의 노이즈 민감성을 극복하기 위해 제안 되었다. 하지만, PCM 은 사용되는 시스템 파라미터들의 초기화와 coincident 클러스터링 문제로 인하여 그 성능이 민감하다. 본 논문에서는 이러한 문제점들을 극복하기 위해 개미군집 알고리즘(Ant colony algorithm)을 이용한 퍼지 클러스터링(fuzzy clustering) 알고리즘을 제안한다. 먼저, 개미군집 알고리즘을 통해 PCM 의 클러스터 개수 및 중심 값 파라미터를 최적화 하고, 미리 분류된 화소 정보를 이용하여 PCM 의 coincident 클러스터링 문제를 해결하였다. 제안된 알고리즘의 효율성을 의료 영상 분할 문제에 적용하여 확인하였다.

Segmenting Layers of Retinal OCT Images using cGAN (cGAN을 이용한 OCT 이미지의 층 분할)

  • Kwon, Oh-Heum;Kwon, Ki-Ryong;Song, Ha-Joo
    • Journal of Korea Multimedia Society
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    • v.23 no.12
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    • pp.1476-1485
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    • 2020
  • Segmenting OCT retinal images into layers is important to diagnose and understand the progression of retinal diseases or identify potential symptoms. The task of manually identifying these layers is a difficult task that requires a lot of time and effort even for medical professionals, and therefore, various studies are being conducted to automate this using deep learning technologies. In this paper, we use cGAN-based neural network to automatically segmenting OCT retinal images into seven terrain-type regions defined by six layer boundaries. The network is composed of a Segnet-based generator model and a discriminator model. We also proposed a dynamic programming algorithm for refining the outputs of the network. We performed experiments using public OCT image data set and compared its performance with the Segnet-only version of the network. The experimental results show that the cGAN-based network outperforms Segnet-only version.

4-Dimensional dose evaluation using deformable image registration in respiratory gated radiotherapy for lung cancer (폐암의 호흡동조방사선치료 시 변형영상정합을 이용한 4차원 선량평가)

  • Um, Ki Cheon;Yoo, Soon Mi;Yoon, In Ha;Back, Geum Mun
    • The Journal of Korean Society for Radiation Therapy
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    • v.30 no.1_2
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    • pp.83-95
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    • 2018
  • Purpose : After planning the Respiratory Gated Radiotherapy for Lung cancer, the movement and volume change of sparing normal structures nearby target are not often considered during dose evaluation. This study carried out 4-D dose evaluation which reflects the movement of normal structures at certain phase of Respiratory Gated Radiotherapy, by using Deformable Image Registration that is well used for Adaptive Radiotherapy. Moreover, the study discussed the need of analysis and established some recommendations, regarding the normal structures's movement and volume change due to Patient's breathing pattern during evaluation of treatment plans. Materials and methods : The subjects were taken from 10 lung cancer patients who received Respiratory Gated Radiotherapy. Using Eclipse(Ver 13.6 Varian, USA), the structures seen in the top phase of CT image was equally set via Propagation or Segmentation Wizard menu, and the structure's movement and volume were analyzed by Center-to Center method. Also, image from each phase and the dose distribution were deformed into top phase CT image, for 4-dimensional dose evaluation, via VELOCITY Program. Also, Using $QUASAR^{TM}$ Phantom(Modus Medical Devices) and $GAFCHROMIC^{TM}$ EBT3 Film(Ashland, USA), verification carried out 4-D dose distribution for 4-D gamma pass rate. Result : The movement of the Inspiration and expiration phase was the most significant in axial direction of right lung, as $0.989{\pm}0.34cm$, and was the least significant in lateral direction of spinal cord, as -0.001 cm. The volume of right lung showed the greatest rate of change as 33.5 %. The maximal and minimal difference in PTV Conformity Index and Homogeneity Index between 3-dimensional dose evaluation and 4-dimensional dose evaluation, was 0.076, 0.021 and 0.011, 0.0 respectfully. The difference of 0.0045~2.76 % was determined in normal structures, using 4-D dose evaluation. 4-D gamma pass rate of every patients passed reference of 95 % gamma pass rate. Conclusion : PTV Conformity Index was more significant in all patients using 4-D dose evaluation, but no significant difference was observed between two dose evaluations for Homogeneity Index. 4-D dose distribution was shown more homogeneous dose compared to 3D dose distribution, by considering the movement from breathing which helps to fill out the PTV margin area. There was difference of 0.004~2.76 % in 4D evaluation of normal structure, and there was significant difference between two evaluation methods in all normal structures, except spinal cord. This study shows that normal structures could be underestimated by 3-D dose evaluation. Therefore, 4-D dose evaluation with Deformable Image Registration will be considered when the dose change is expected in normal structures due to patient's breathing pattern. 4-D dose evaluation with Deformable Image Registration is considered to be a more realistic dose evaluation method by reflecting the movement of normal structures from patient's breathing pattern.

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A novel method to extract the region of five sensory organ and Myungdang from a facial image for facial ocular inspection (얼굴 영상에서 망진을 위한 오관기관 및 명당 부위의 추출)

  • Min, Byong-Seok;Cho, Dong-Uk
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.7 no.6
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    • pp.1257-1263
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    • 2006
  • Many automatic medical devices have been invented and developed mostly for the western medicine, not for the oriental medicine. Facial ocular inspection is one of the four diagnosis methods of oriental medicine, which makes a diagnosis of disease by observing the shape and color of patient's vital organs. In facial ocular inspection, the regions of five sensory organs and Myungdang are specially important. In this paper, we propose a novel method to extract the five sensory organ and Myungdang from a facial image for facial ocular inspection. Finally, we show the usefulness of the proposed method by experiments.

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Image Analysis for Discrimination of Neoplastic Cellis in Spatial Frequency Domain (종양세포식별을 위한 공간주파수영역에서의 화상해석)

  • 나철훈;김창원;김현재
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.18 no.3
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    • pp.385-396
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    • 1993
  • In this paper, a improved method of digital image analysis required in basic medical science for diagnosis of cells was proposed. The object image was the thyroid gland cell image, and the purpose was automatic discrimination of three classes cells(normal cell, follicular neoplastic cells, and papillary neoplastic cells) by difference of chromatin patterns. To segment the cell nucleus from background, the region segmentation algorithm by edge tracing was proposed. And feature parameter was obtained from discrete Fourier transformation of image. After construct a feature sample group of each cells, experiment of discrimination was executed with any verification cells. As a consequency of using features proposed in this paper, get a better recognition rate(70-90%) than previously reported papers, and this method give shape to get objectivity and fixed quantity in diagnosis of cells, The methods described in this paper be used immediately for discrimination of neoplastic cells.

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Anonymity of Medical Brain Images (의료 두뇌영상의 익명성)

  • Lee, Hyo-Jong;Du, Ruoyu
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.49 no.1
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    • pp.81-87
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    • 2012
  • The current defacing method for keeping an anonymity of brain images damages the integrity of a precise brain analysis due to over removal, although it maintains the patients' privacy. A novel method has been developed to create an anonymous face model while keeping the voxel values of an image exactly the same as that of the original one. The method contains two steps: construction of a mockup brain template from ten normalized brain images and a substitution of the mockup brain to the brain image. A level set segmentation algorithm is applied to segment a scalp-skull apart from the whole brain volume. The segmented mockup brain is coregistered and normalized to the subject brain image to create an anonymous face model. The validity of this modification is tested through comparing the intensity of voxels inside a brain area from the mockup brain with the original brain image. The result shows that the intensity of voxels inside from the mockup brain is same as ones from an original brain image, while its anonymity is guaranteed.

3D Rendering of Magnetic Resonance Images using Visualization Toolkit and Microsoft.NET Framework

  • Madusanka, Nuwan;Zaben, Naim Al;Shidaifat, Alaaddin Al;Choi, Heung-Kook
    • Journal of Multimedia Information System
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    • v.2 no.2
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    • pp.207-214
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    • 2015
  • In this paper, we proposed new software for 3D rendering of MR images in the medical domain using C# wrapper of Visualization Toolkit (VTK) and Microsoft .NET framework. Our objective in developing this software was to provide medical image segmentation, 3D rendering and visualization of hippocampus for diagnosis of Alzheimer disease patients using DICOM Images. Such three dimensional visualization can play an important role in the diagnosis of Alzheimer disease. Segmented images can be used to reconstruct the 3D volume of the hippocampus, and it can be used for the feature extraction, measure the surface area and volume of hippocampus to assist the diagnosis process. This software has been designed with interactive user interfaces and graphic kernels based on Microsoft.NET framework to get benefited from C# programming techniques, in particular to design pattern and rapid application development nature, a preliminary interactive window is functioning by invoking C#, and the kernel of VTK is simultaneously embedded in to the window, where the graphics resources are then allocated. Representation of visualization is through an interactive window so that the data could be rendered according to user's preference.

Characteristics of Magnetic Resonance-Based Attenuation Correction Map on Phantom Study in Positron Emission Tomography/Magnetic Resonance Imaging System

  • Hong, Cheolpyo
    • Progress in Medical Physics
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    • v.31 no.4
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    • pp.189-193
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    • 2020
  • An MR-based attenuation correction (MRAC) map plays an important role in quantitative positron emission tomography (PET) image evaluation in PET/magnetic resonance imaging (MRI) systems. However, the MRAC map is affected by the magnetic field inhomogeneity of MRIs. This study aims to evaluate the characteristics of MRAC maps of physical phantoms on PET/MRI images. Phantom measurements were performed using the Siemens Biograph mMR. The modular type physical phantoms that provide assembly versatility for phantom construction were scanned in a four-channel Body Matrix coil. The MRAC map was generated using the two-point Dixon-based segmentation method for whole-body imaging. The modular phantoms were scanned in compact and non-compact assembly configurations. In addition, the phantoms were scanned repeatedly to generate MRAC maps. The acquired MRAC maps show differently assigned values for void areas. An incorrect assignment of a void area was shown on a locally compact space between phantoms. The assigned MRAC values were distorted using a wide field-of-view (FOV). The MRAC values also differed after repeated scans. However, the erroneous MRAC values appeared outside of phantom, except for a large FOV. The MRAC map of the phantom was affected by phantom configuration and the number of scans. A quantitative study using a phantom in a PET/MRI system should be performed after evaluation of the MRAC map characteristics.