• 제목/요약/키워드: Marker-density method

검색결과 58건 처리시간 0.021초

Evaluation of a New Fine-mapping Method Exploiting Linkage Disequilibrium: a Case Study Analysing a QTL with Major Effect on Milk Composition on Bovine Chromosome 14

  • Kim, JongJoo;Georges, Michel
    • Asian-Australasian Journal of Animal Sciences
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    • 제15권9호
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    • pp.1250-1256
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    • 2002
  • A novel fine-mapping method exploiting linkage disequilibrium (LD) was applied to better refine the quantitative trait loci (QTL) positions for milk production traits on bovine chromosome 14 in the pedigree comprising 22 paternal half-sib families of a Black-and-White Holstein-Friesian grand-daughter design in the Netherlands for a total of 1,034 sons. The chromosome map was constructed with the 31 genetic markers spanning 90 Kosambi cM with the average inter-marker distance of 3.5 cM. The linkage analyses, in which the effects of sire QTL alleles were assumed random and the random factor of the QTL allelic effects was incorporated into the Animal Model, found the QTL for milk, fat, and protein yield and fat and protein % with the Lod scores of 10.9, 2.3, 6.0, 25.4 and 3.2, respectively. The joint analyses including LD information by use of multi-marker haplotypes highly increased the evidence of the QTL (Lod scores were 25.1, 20.9, 11.0, 85.7 and 17.4 for the corresponding traits, respectively). The joint analyses including DGAT markers in the defined haplotypes again increased the QTL evidence and the most likely QTL positions for the five traits coincided with the position of the DGAT gene, supporting the hypothesis of the direct causal involvement of the DGAT gene. This study strongly indicates that the exploitation of LD information will allow additional gains of power and precision in finding and localising QTL of interest in livestock species, on the condition of high marker density around the QTL region.

한국 재래닭의 경제형질 개량을 위한 apoVLDL-II 유전자의 유전자형 분석 (Genotype Analysis of apoVLDL-II Gene in Korean Chicken Breeds)

  • 정기철;이유주;;장병귀;최강덕;이준헌
    • 한국가금학회지
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    • 제35권4호
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    • pp.335-339
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    • 2009
  • 초저밀도 아포지단백(Very Low Density Apolipoprotein-II)은 조직의 지방단백질 분비 조성과 밀접한 관련이 있다고 알려진 유전자로서 최근 닭에서 성장 및 체구성과 매우 높은 연관이 있다고 알려져 있다. 본 연구는 닭의 3품종에서 PCR-RFLP 방법을 통해 apoVLDL-II 유전자의 유전자형을 분석하고 Broiler 형(B)과 Fayoumi 형(F)을 결정하였다. 각 품종간 유전자형 빈도는 한국 재래계에서 BB가 0.37, BF가 0.43, FF가 0.2로 검출되었고, 오계에서 BB가 0.2, BF가 0.6, FF가 0.2로 검출되었으며, 백색레그혼에서 BB가 0.16, BF가 0.84로 검출되었다. Broiler 형은 성장이나 체구성을 높이는 방향으로 작용한다는 기존의 보고를 바탕으로 본 연구에서 나타난 집단내 다양한 유전자형 분포는 재검증 작업을 거쳐 육종에 의해 이 형질들을 개량할 수 있음을 의미한다.

Numerical Simulations of Breaking Waves above a Two-Dimensional Submerged Circular Cylinder

  • Kim, Seung-Nam;Lee, Young-Gill
    • Journal of Ship and Ocean Technology
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    • 제5권2호
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    • pp.50-61
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    • 2001
  • In this paper, nonlinear interactions between water waves and a horizontally submerged circular cylinder are numerically simulated. In this case, the nonlinear interactions between them generated a wave breaking phenomenon. The wave breaking phenomenon plays an important role in the wave farce. Negative drifting forces are raised at shallow submerged cylinders under waves because of the wave breaking phenomenon. For the numerical simulation, a finite difference method based on the unsteady incompressible Navier-Stokes equations and the continuity equation is adopted in the rectangular grid system. The free surface is simulated with a computational simulation method of two-layer flow by using marker density. The results are compared with some existing computational and experimental results.

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고정된 직사각형 격자계에서 움직이는 물체주위 자유수면유동 계산을 위한 수치기법의 개발 (A NUMERICAL SIMULATION METHOD FOR FREE SURFACE FLOWS NEAR MOVING BODIES IN A FIXED RECTANGULAR GRID SYSTEM)

  • 정광열;이영길;하윤진
    • 한국전산유체공학회:학술대회논문집
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    • 한국전산유체공학회 2011년 춘계학술대회논문집
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    • pp.395-406
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    • 2011
  • In this research a numerical simulation method is developed for moving body in free surface flows using fixed staggered rectangular grid system. The non-linear free surface near the body is defined by marker-density method. The body boundary is defined by line segment connecting the points where the body surface and grid line meet. Continuity equation and Navier-Stokes equations are used as governing equations and the equations are coupled with two-step projection method. The velocities and pressures of body boundary and free surface cells are calculated with simultaneous iterative method. To treat a body movement in a fixed grid system, the volume displaced by moving body is added to the divergence of the body boundary cell. For the verification of the present numerical method. vortex shedding period of advancing cylinder is calculated and the period is compared with existing experiment results. Moreover, added mass and damping coefficients of a vertically excited box are calculated and the computed results are compared with published experiment results. Impulsive pressure and water level variation due to sloshing phenomenon are simulated and the results are compared with published experiment results. Varying the plunger shape, the waves generated by plunging type wave maker are compared with the 2nd order Stokes wave theory The plunger shape generating the wave that shows the best agreement with the theory is represented.

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한국인 남성 운동선수군에서 Osteocalcin 유전자의 C298T 다형성의 분포와 골밀도와의 관계 (The Distribution of C298T Polymorphism in the Oseteocalcin Gene from Korean Male Athletes and its Association with Bone Mineral Density)

  • 정인근;강병용;김지영;오상덕;하남주
    • 약학회지
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    • 제50권1호
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    • pp.26-32
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    • 2006
  • Osteocalcin is a vitamin K dependent and bone specific protein which plays an important role in the regulation of bone and calcium metabolism. In this study, we evaluated the relationship between the C298T polymorphism in the osteocalcin gene and bone mineral density (BMD) in Korean young men and their interaction with physical activity. BMDs of the femoral neck and lumbar spine were measured using dual energy X-ray absorptiometry, and the C298T polymorphism in the osteocalcin gene determined using polymerase chain reaction (PCR)-HindIII restriction fragment length polymorphism (RFLP) method. We did not observe any significant differences in the femoral neck and lumbar spine BMDs across genotypes of this polymorphism in controls, athletes or combined groups, respectively (P>0.05). Therefore, our data suggest that the C298T polymorphism in the osteocalcin gene is not a suitable genetic marker for the susceptibility to BMD.

수두차를 이용한 해저퇴적물 흡입장비 개발에 관한 연구 (A Study on the Development of Inhalation Equipment for Seabed Sediment by the Difference of Water Head)

  • 이영길;손충렬;정우철;김강신;정광열
    • 한국해양공학회:학술대회논문집
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    • 한국해양공학회 2006년 창립20주년기념 정기학술대회 및 국제워크샵
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    • pp.261-264
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    • 2006
  • This paper deal with development of dredging equipment that proper water head elimination method changing transitional dredging method. Numerical simulation and model test were accomplished for development of seabed sediment inhalation equipment using water head. Sediment elimination system by the difference of water head has been analysed by numerical method. Model test was achieved for inhalation equipment performance test using water head by primary design. Also sediment elimination system has designed and developed that doesn't occur secondary pollution phenomenon. To verify the numerical results are compared with experimental results.

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뽕잎 분말 첨가 두부 섭취가 충남 일부 지역에 거주하는 흡연 남자 성인의 손목 골밀도, 생화학 골대사 지표 및 혈청 지질 성상에 미친 영향 (Effects of Mulberry-Leaf Powder Tofu Consumption on Carpal Bone Mineral Density, Biochemical Bone Turnover Markers and Serum Lipid Profiles in Smoking Male Adults Living in Choongnam)

  • 김애정;김명환;정건섭
    • 동아시아식생활학회지
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    • 제17권1호
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    • pp.1-10
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    • 2007
  • The effects of mulberry-leaf powder Tofu(MPT) on anthropometric measurements, including bone mineral density(BMD) in the right carpus, biochemical bone turnover markers, serum levels of lipids and macrominerals, were investigated in 30 smoking male adults who lived in Choongnam were given MPT(100 g/day) for 4 weeks. The average ages, number of smoked cigarettes and packyear were 22.38 years, 15.12/day and 3.54 years, respectively. The nutrient contents per 100 g MPT were 86.10 kcal energy, 8.98 g protein, 0.53 mg fiber, 211.33 mg Ca and 1.59 g fat. Anthropometric measurements, including dietary intake using the 24-hours recall method, carpal BMD using DEXA, serum levels of protein, albumin and glucose, lipid profiles (cholesterol, triglyceride, HDL-cholesterol, LDL-cholesterol) with Al(atherosclerosis index), HTR, CRF, LHBt, some biomarkers of BMD(serum alkaline phosphatase activity, osteocalcin, urinary DPD), and serum macrominerals(Ca, Ca/P ratio, Mg) and Pb were analyzed before and after consumption of MPT. After MPT consumption, dietary intakes of plant protein, total Ca and plant Ca increased significantly, but there were no significant differences in anthropometric measurements, BMD with bone metabolism markers, serum levels of protein, albumin or glucose, lipid profiles with AI, HTR, LHR and CRF.

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Detection of QTL on Bovine X Chromosome by Exploiting Linkage Disequilibrium

  • Kim, Jong-Joo
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권5호
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    • pp.617-623
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    • 2008
  • A fine-mapping method exploiting linkage disequilibrium was used to detect quantitative trait loci (QTL) on the X chromosome affecting milk production, body conformation and productivity traits. The pedigree comprised 22 paternal half-sib families of Black-and-White Holstein bulls in the Netherlands in a grand-daughter design for a total of 955 sons. Twenty-five microsatellite markers were genotyped to construct a linkage map on the chromosome X spanning 170 Haldane cM with an average inter-marker distance of 7.1 cM. A covariance matrix including elements about identical-by-descent probabilities between haplotypes regarding QTL allele effects was incorporated into the animal model, and a restricted maximum-likelihood method was applied for the presence of QTL using the LDVCM program. Significance thresholds were obtained by permuting haplotypes to phenotypes and by using a false discovery rate procedure. Seven QTL responsible for conformation types (teat length, rump width, rear leg set, angularity and fore udder attachment), behavior (temperament) and a mixture of production and health (durable prestation) were detected at the suggestive level. Some QTL affecting teat length, rump width, durable prestation and rear leg set had small numbers of haplotype clusters, which may indicate good classification of alleles for causal genes or markers that are tightly associated with the causal mutation. However, higher maker density is required to better refine the QTL position and to better characterize functionally distinct haplotypes which will provide information to find causal genes for the traits.

복잡한 해면효과익선 계산 모형 주위의 3차원 유동장의 수치계산 (Three-Dimensional Flow Simulations around a Numerical Model of Wing-In-Ground(WIG) Effect Ship having the complex geometry)

  • 박종천;신명수
    • 한국전산유체공학회:학술대회논문집
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    • 한국전산유체공학회 1996년도 춘계 학술대회논문집
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    • pp.85-92
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    • 1996
  • Numerical simulations are made for the three-dimensional flow around a wing in ground effect craft haying the complex geometry. A numerical tool is developed for the primary design of hull and wing shape of practical Wing-In-Ground effect(WIG) stop. The finite-difference method is utilized to descretize the governing equations and pressure field is obtained by using Marker-And-Cell(MAC) method. The air and water flows are simultaneously simulated in the time-marching solution procedure for the Navier-Stokes equation. The porosity technique and the density function are devised for the implementation of the three-dimensional body-boundary and the free-surface conditions, respectively. In this paper, a craft is modeled simply by three blocks containing a wing mounted on a main body horizontally, with the endplate. The numerical calculations of a WIG advancing in a calm water are performed and the WIG-generated wave profiles are also obtained. In the final paper, details of the numerical methods employed for the present study and calculated results are discussed.

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TUMMAC차분법(差分法)에 의한 3차원(次元) 비선형파(非線形波)의 해석(解析)에 관한 연구(硏究) (Some Applications of the TUMMAC Method to 3D Water-wave Problems)

  • 이영길;궁전수명;미곡상
    • 대한조선학회지
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    • 제25권4호
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    • pp.13-27
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    • 1988
  • TUMMAC차분법(差分法)이 두 가지의 삼차원파(三次元波), 즉 배의 항주(航走)에 따른 파형(波形)과 수직사각주(垂直四角柱) 주위의 쇄파해석(碎波解析)에 적용(適用)되어졌다. Series 60($C_B=0.6$) 모형선(模型船)과 HSVA 모형선(模型船)의 선수부(船首部)에 의한 파형(波形)이 자유표면(自由表面)과 선체후반부(船體後半部)에서의 boundary cell 처리를 엄밀화한 $TUMMAC-IV_{vm1}$방법(方法)에 의하여 계산(計算)되어졌으며, 그 결과가 실제(實際)의 실험결과(實驗結果)들과 비교(比較)되었다. 실험결과(實驗結果)와의 비교를 통하여, $TUMMAC-IV_{vm1}$방법(方法)은 배에 의한 비선형파(非線形波)의 특성해석(特性解析)에 매우 응용성(應用性)이 높음을 보였다. 특히, 비대선형(肥大船型)인 HSVA 모형선(模型船)의 경우는 계산(計算)된 비선형선수파(非線形船首波)의 특성(特性)이 실험결과(實驗結果)와 좋은 일치를 보였다. 수직사각주(垂直四角柱)주위의 쇄파(碎波)를 포함한 심한 비선형파(非線形波)가 삼차원비선형파(三次元非線形波)의 대표적(對表的)인 예(例)로써 TUMMAC-VI 방법(方法)에 의하여 계산(計算)되었다. TUMMAC-VI 방법(方法)은 이층류(二層流)를 함께 푸는 방법(方法)으로, 두가지 유체(流體) 사이의 밀도변화(密度變化), 즉 marker-density를 이용하여 interface를 결정하게 된다. 그러나, 비압축성유체(非壓縮性流體)에 관한 N-S 방정식(方程式)의 해(解)이므로, 그 밖의 계산(計算)에서는 각각의 대표적(對表的)인 밀도(密度)를 사용한다. 계산결과(計算結果)는 삭가주(四角柱) 앞부분의 원형파(圓形波)와 앞어깨에서의 심한 경사를 가지는 파(波), 뒷부분에서의 복잡(複雜)한 쇄파현상(碎波現像)들이 실제의 파특성(波特性)을 잘 나타내어 주었다. TUMMAC-VI 방법(方法)은 interface의 처리를 포함하여 앞으로도 개선(改善)의 여지가 많으며, 단지 공기(空氣)와 물만이 아닌 일반적(一般的)인 이층류(二層流)의 해석에도 폭 넓게 이용될 수 있으리라 본다.

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