• 제목/요약/키워드: Interval Mapping

검색결과 140건 처리시간 0.023초

Long-Term Wind Resource Mapping of Korean West-South Offshore for the 2.5 GW Offshore Wind Power Project

  • Kim, Hyun-Goo;Jang, Moon-Seok;Ko, Suk-Hwan
    • 한국환경과학회지
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    • 제22권10호
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    • pp.1305-1316
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    • 2013
  • A long-term wind resource map was made to provide the key design data for the 2.5 GW Korean West-South Offshore Wind Project, and its reliability was validated. A one-way dynamic downscaling of the MERRA reanalysis meteorological data of the Yeongwang-Gochang offshore was carried out using WindSim, a Computational Fluid Dynamics based wind resource mapping software, to establish a 33-year time series wind resource map of 100 m x 100 m spatial resolution and 1-hour interval temporal resolution from 1979 to 2012. The simulated wind resource map was validated by comparison with wind measurement data from the HeMOSU offshore meteorological tower, the Wangdeungdo Island meteorological tower, and the Gochang transmission tower on the nearby coastline, and the uncertainty due to long-term variability was analyzed. The long-term variability of the wind power was investigated in inter-annual, monthly, and daily units while the short-term variability was examined as the pattern of the coefficient of variation in hourly units. The results showed that the inter-annual variability had a maximum wind index variance of 22.3% while the short-term variability, i.e., the annual standard deviation of the hourly average wind power, was $0.041{\pm}0.001$, indicating steady variability.

Mapping Quantitative Trait Loci for Meat Quality on Pig Chromosome 3, 4 and 7

  • Zuo, Bo;Xiong, YuanZhu;Su, YuHong;Deng, ChangYan;Zheng, Rong;Jiang, Siwen
    • Asian-Australasian Journal of Animal Sciences
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    • 제16권3호
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    • pp.320-324
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    • 2003
  • The objective of this study was to localize QTL affecting meat quality in a pig family of three generations. All animals were genotyped for twenty-four microsatellites on SSC3 (Sus scrofa chromosome 3), SSC4 and SSC7. One hundred and forty $F_2$ offsprings were scored for eleven meat quality traits. Least square regression interval mapping revealed quantitative trait loci (QTL) effect for meat pH (m. Semipinalis Capitis, SC) on SSC4 and SSC7; for moisture (m. Longissimus Dorsi, LD) on SSC3. Furthermore, there was suggestive evidence for a QTL on SSC4 affecting intramuscular fat (IMF) content that nearly approached the chromosomewise (p=0.05) significance threshold.

Quantitative trait loci (QTLs) detection for plant regeneration ability from seed culture in rice (Oryza sativa L.)

  • Liu, Meihan;Sohn, Jae-Keun
    • Journal of Plant Biotechnology
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    • 제39권3호
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    • pp.169-174
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    • 2012
  • Quantitative trait loci (QTLs), which were related to the ability of callus induction and plant regeneration in seed culture of rice, were analyzed using a mapping population from a cross between the rice cultivars 'Samgang' (tongil type) and 'Nagdong' (japonica). A tongil type rice cultivar, 'Samgang' showed lower frequency (20%) of plant regeneration than that (35%) of japonica rice, 'Nagdong'. Transgressive segregations were observed for the ability of callus induction and plant regeneration from the seed-derived calli of 58 doubled haploid (DH) lines. The ability of plant regeneration of 58 doubled haploid lines showed a continuous distribution with comparatively wide range (10.0 to 66.7%) of variation. Composite interval mapping analysis was used to identify the QTLs controlling callus induction and plant regeneration ability. Four significant QTLs, qCWS6, qCWS8, qCWS9 and qCWS11, associated with callus weight per seed were detected on chromosomes 6, 8, 9, and 11 with LOD values of 3.30, 2.60, 2.70 and 2.43, explaining 36% of the total phenotypic variation. Three significant QTLs, qPR1, qPR6, and qPR11, for the ability of plant regeneration were located on chromosome 1, 6, and 11 at LOD score of 2.25, 2.15 and 2.55, accounting for 24 % of the total phenotypic variation. The present study should be useful for improving the efficiency of plant regeneration in tissue culture of indica rice by means of marker-assisted selection.

가은지역 석회 공동 탐지를 위한 고정밀 중력탐사 (A Microgravity for Mapping Karstic Cavities at Gaeun)

  • 박영수;임형래;임무택;구성본
    • 한국지구물리탐사학회:학술대회논문집
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    • 한국지구물리탐사학회 2008년도 공동학술대회
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    • pp.167-172
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    • 2008
  • 경북 문경군 가은읍 가은역 일대 석회암 분포 지역에서 지하 공동의 위치 및 발달 양상을 파악하기 위하여 고정밀 중력탐사를 하였다. 측점 간격은 4m로 하여 모두 약 1,100 측점에서 중력을 측정하였다. 잔여 부게 이상도에서 가장 낮은 중력 이상대를 지나는 3개의 측선에 대하여 MS(minimum support) 역산으로 밀도 분포 단면을 작성하였다. 또한, growing body 역산을 이용하여 3차원 밀도 분포 영상을 구하였다. 2차원과 3차원 밀도 분포도는 공동이 발달한 지역을 잘 가리키고 있으며, 석회암이 지하수에 부분적으로 용해되어 복잡한 형태의 공동 시스템을 구성하고 있고 부분적으로는 상당히 얕은 곳까지 발달해 있을 것으로 해석된다.

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칼만추정과 초월함수 사영을 통한 L1 신호간의 거리 Metric에 IES을 적용한 새로운 고장진단 기법 (A New Fault Diagnosis Scheme between L1 Signals Using IES on the Metric Defined via Kalman Filter and Exponential Function Transformation)

  • 김성수
    • 전기학회논문지P
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    • 제64권1호
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    • pp.23-28
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    • 2015
  • Measuring the distances between signals in the signal space is usually determined by obtaining the ideal metric which is not easy to obtain. In this research we have investigated the scheme that measures the distances between the signals constructed with the measured voltage signals connected to electric apparatus using Kalman filter and exponential mapping. The metric is defined on the feature signals obtained via the estimation process of a Kalman filter and the mapping process using the exponential transformation. Diagnosis is on the voltage fluctuations is applied to determining whether the system is in the stable state or not due to the unexpected accidents, such as power overcharge, discharge, outages flow may be the cause of the accident. The decision making scheme evaluated with respect to the effectiveness and the degree of complication with different variances. Two methods, the Hard Limit Threshold Scheme(HLTS) and the Interval Energy Scheme(IES) are proposed and compared. In experiments the IES shows better tolerance to impulse noise than the HLTS.

Mapping of Quantitative Trait Loci for Salt Tolerance at the Seedling Stage in Rice

  • Lee, Seung Yeob;Ahn, Jeong Ho;Cha, Young Soon;Yun, Doh Won;Lee, Myung Chul;Ko, Jong Cheol;Lee, Kyu Seong;Eun, Moo Young
    • Molecules and Cells
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    • 제21권2호
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    • pp.192-196
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    • 2006
  • Salt tolerance was evaluated at the young seedling stage of rice (Oryza sativa L.) using recombinant inbred lines (MG RILs) from a cross between Milyang 23 (japonica/indica) and Gihobyeo (japonica). 22 of 164 MG RILs were classified as tolerant with visual scores of 3.5-5.0 in 0.7% NaCl. Interval mapping of QTLs related to salt tolerance was conducted on the basis of the visual scores at the young seedling stage. Two QTLs, qST1 and qST3, conferring salt tolerance, were detected on chromosome 1 and 3, respectively, and the total phenotypic variance explained by the two QTLs was 36.9% in the MG RIL population. qST1 was the major QTL explaining 27.8% of the total phenotypic variation. qST1 was flanked by Est12~RZ569A, and qST3 was flanked by RG179~RZ596. The detection of new QTLs associated with salt tolerance will provide important information for the functional analysis of rice salt tolerance.

Detection of QTLs Influencing Panicle Length, Panicle Grain Number and Panicle Grain Sterility in Rice(Oryza sativa L.)

  • Ahamadi, Jafar;Fotokian, M.H.;Fabriki-Orang, S.
    • Journal of Crop Science and Biotechnology
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    • 제11권3호
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    • pp.163-170
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    • 2008
  • The detection, characterization and use of quantitative traits loci, QTL, have significant potential to improve the efficiency of selective breeding of species. Therefore, a population with 59 advanced backcross lines($BC_2F_5$), derived from a cross between IR64 and Tarome molaei, were studied in Tonekabon Rice Research Station of Iran in order to map QTLs for panicle length, number of grain per panicle, and panicle grain sterility in rice. The parental screening wtih 235 SSR markers in agarose and polyacrylamide gels revealed 114 markers with clear polymorphic bands. To search for QTLs associated with panicle length, number of grain per panicle, and panicle grain sterility, we constructed a genetic linkage map using 114 microsatellite markers. Positive and negative transgressive segregations were observed in $BC_2F_5$ lines for all traits. Using multiple interval mapping(MIM), a total of 20 putative QTLs were detected, of which eight were for panicle length, three for number of grains, and nine for panicle grain sterility. The maximum number of QTLs were mapped on chromosomes 1 and 2 with eight QTLs. These QTL markers could possible be utilized for marker-assisted selection.

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Characterization of Quantitative Trait Loci (QTL) for Growth using Genome Scanning in Korean Native Pig

  • Lee, H.K.;Choi, I.S.;Choi, B.H.;Kim, T.H.;Jung, I.J.
    • Reproductive and Developmental Biology
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    • 제28권2호
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    • pp.107-112
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    • 2004
  • Molecular genetic markers were genotyped used to detect chromosomal regions which contain economically important traits such as growth traits in pigs. Three generation resource population was constructed from a cross between the Korean native boars and Landrace sows. A total of 193 F2 animals from intercross of F1 were produced. Phenotypic data on 7 traits, birth weight, body weight at 3, 5, 12, 30 weeks of age, live empty weight were collected for F2 animals. Animals including grandparents (F0), parents (F1), offspring (F2) were genotyped for 194 microsatellite markers covering from chromosome 1 to 18. Quantitative trait locus analyses were performed using interval mapping by regression under line-cross model. To characterize presence of imprinting, genetic full model in which dominance, additive and imprinting effect were included was fitted in this analysis. Significance thresholds were determined by permutation test. Using imprinting full model, four QTL with expression of imprinted effect were detected at 5% chromosome-wide significance level for growth traits on chromosome 1, 5, 7, 13, 14, and 16.

돼지 염색체상의 IGF II 유전자 인접 부위에서 번식 및 성장형질에 연관된 Imprinting 양적형질 유전자 좌위(QTL)의 탐색 (Detection of Imprinted Quantitative Traits Loci (QTL) for Reproductive and Growth Traits in Region of IGF II Gene on fig Chromosome)

  • Lee, Hakkyo
    • 한국가축번식학회지
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    • 제25권4호
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    • pp.295-304
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    • 2001
  • 양적형질 유전자 좌위 (QTL)의 탐색과 이들의 발현 양상 규명을 위해 Berkshire종과 Yorkshire종 간의 교배를 통해 생산된 F$_2$ 실험집단에서 regression interval mapping이 이루어졌다. 모두 525마리의 F$_2$ 자손들에서 일당 증체량, 평균 등지방 두께, 배장근 단면적이 표현형으로 조사되어 분석에 이용되었으며 모돈의 번식능력에 관련된 QTL 존재 여부 추정을 위해 간접 형질로 인정되고 있는 생시체중과 이유 시 체중을 분석에 포함하였다. 양적형질의 분리 여부를 추론하기 위하여 돼지의 2번 염색체에서 8종의 microsatellite 표지인자가 선택되어 유전자형이 조사되었다. 각각의 유전적 모델에서 산출된 통계량으로부터 QTL 존재 여부와 특정 QTL 발현 양상에 대한 여부를 나타낼 수 있는 인정되는 수준의 type I 오차율을 제어할 수 있는 임계값 (threshold)을 permutation test에 의해 제시하였다. QTL의 존재와 그 QTL의 Imprinting 여부는 부계와 모계를 통해 원가계 1세대의 대립유전자가 전달되는 과정에서 발현되는 특성을 분리시키는 통계적 의형을 설정하여 검정 통계량을 산출하였다. 분석에 이용된 3가지 형질과 연관된 3종류의 QTL 존재 가능성을 돼지의 2번 염색체에서 확인하였으며, 이들 중 평균 등지방 두께와 배장근 단면적에 각각 영향을 미칠 것으로 추론된 2종류의 QTL 발현은 정상적인 Mendelian 유전양식을 따르지 않고 imprinting된다는 증거를 얻어냈다. 또한 이들 imprinting되는 QTL은 이미 imprinting 표현 양식을 가진다고 알려진 IGF II 유전자의 위치와 거의 동일한 염색체강의 지점에서 부계로 전달되는 QTL만이 발현되는 특징을 보이는 것으로 밝혀졌다. 한편 Mendelian 모형과 imprinting 모형 모두에서 유의적인 임계값 이상을 보이는 검정 통계량이 산출된 일당 증체량 연관 QTL은 두 모형간의 적정성 분석을 위한 검정을 퐁해 Mendelian 양식을 따른 것으로 최종 확인되었다.

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유류오염 모니터링 자료의 GIS 주제도 제작 절차 수립 연구 (A Study on the Establishment of a GIS Thematic Mapping Procedure for Oil Spill Monitoring Data)

  • 김태훈;최현우
    • 한국지리정보학회지
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    • 제15권1호
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    • pp.1-15
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    • 2012
  • 2007년 12월 허베이 스피리트호 유류유출 사고 이후, 유류오염의 영향을 평가하기 위해 태안 해역을 중심으로 월별, 계절별로 조간대와 조하대에서 유류오염, 해양생태계, 해양환경과 같은 해양과학 모니터링이 지속적으로 수행되고 있다. 이러한 유류오염에 따른 해양 환경 및 생태계의 시공간적 변동을 탐색적으로 분석하기 위해서는 가시적이고 요약된 정보가 담긴 GIS 주제도가 매우 유용하다. 지도 제작에서 자료 속성의 특성에 따른 지도 타입의 정의와 범례 제작은 필수 요소이다. 본 연구에서는 자료 항목별로 자료의 속성과 GIS 자료 타입에 따른 지도 타입을 정의하고, 자료의 히스토그램 분석을 통한 두 가지의 자료 분포 형태를 이용하여 범례의 구간등급을 설정하였다. 자료가 균일분포인 경우에는 동 등위 분할법을, 정규분포인 경우에는 표준편차 분할법을 각각 적용하였다. 아울러, 지도 요소 정의 등을 통해 지도 타입별로 주제도 템플릿을 제작하였다. 본 연구를 통해, 체계적인 지도 제작 방법과 절차를 수립함으로써 다양한 해양과학 자료에 대한 표준화된 주제도를 효율적으로 제작 가능하였다.