• Title/Summary/Keyword: InDel

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Development of InDel markers to identify Capsicum disease resistance using whole genome resequencing

  • Karna, Sandeep;Ahn, Yul-Kyun
    • Journal of Plant Biotechnology
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    • v.45 no.3
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    • pp.228-235
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    • 2018
  • In this study, two pepper varieties, PRH1 (powdery mildew resistance line) and Saengryeg (powdery mildew resistance line), were resequenced using next generation sequencing technology in order to develop InDel markers. The genome-wide discovery of InDel variation was performed by comparing the whole-genome resequencing data of two pepper varieties to the Capsicum annuum cv. CM334 reference genome. A total of 334,236 and 318,256 InDels were identified in PRH1 and Saengryeg, respectively. The greatest number of homozygous InDels were discovered on chromosome 1 in PRH1 (24,954) and on chromosome 10 (29,552) in Saengryeg. Among these homozygous InDels, 19,094 and 4,885 InDels were distributed in the genic regions of PRH1 and Saengryeg, respectively, and 198,570 and 183,468 InDels were distributed in the intergenic regions. We have identified 197,821 polymorphic InDels between PRH1 and Saengryeg. A total of 11,697 primers sets were generated, resulting in the discovery of four polymorphic InDel markers. These new markers will be utilized in order to identify disease resistance genotypes in breeding populations. Therefore, our results will make a one-step advancement in whole genome resequencing and add genetic resource datasets in pepper breeding research.

Presence of Proboscipedia and Caudal Gene Homologues in a Bivalve Mollusc

  • Carpintero, Pablo;Pazos, Antonio Juan;Abad, Marcelina;Sanchez, Jose Luis;De La Luz Perez-Paralle, Maria
    • BMB Reports
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    • v.37 no.5
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    • pp.625-628
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    • 2004
  • Homeobox genes encode a family of transcription factors that have essential roles in regulating the development of eukaryotes. Although they have been extensively studied in different phyla, relatively little is known about homeobox-containing genes and their function in molluscs. In this study, we used a polymerase chain reaction to investigate homeobox genes in the bivalve mollusc Pecten maximus. Four different homeobox sequences were identified; two were homologues of the non-Hox cluster gene caudal and the two remaining sequences had a significant homology to the ANT-C gene proboscipedia. These sequences represent the first cad and pb homologues isolated from a member of the class Bivalvia, phylum Mollusca.

Prevalence of infectious reproductive diseases in sows from Tolima-Colombia

  • Nicolas Carrillo-Godoy;Valentina Rueda-Garcia;Heinner Fabian Uribe-Garcia;Iang Schroniltgen Rondon-Barragan
    • Korean Journal of Veterinary Research
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    • v.63 no.1
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    • pp.4.1-4.5
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    • 2023
  • The prevalence of some swine reproductive and zoonotic diseases in Colombia is unknown, making their management difficult. This study assessed the prevalence of porcine circovirus type 3 (PCV3), Leptospira interrogans, pseudorabies virus, and porcine gamma-herpesvirus by polymerase chain reaction in sows in the productive stage, from farms with a history of reproductive failures, at the department of Tolima. The prevalence of PCV3 was 2.6% and 12.6% for L. interrogans, with some samples co-infected with PCV2. Owing to the coinfections with PCV2, it is necessary to establish whether the interactions between these pathogens were related to the presence of reproductive problems.

ON THE INTERSECTION OF k-FIBONACCI AND PELL NUMBERS

  • Bravo, Jhon J.;Gomez, Carlos A.;Herrera, Jose L.
    • Bulletin of the Korean Mathematical Society
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    • v.56 no.2
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    • pp.535-547
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    • 2019
  • In this paper, by using the lower bound of linear forms in logarithms of Matveev and the theory of continued fractions by means of a variation of a result of Dujella and $Peth{\ddot{o}}$, we find all generalized Fibonacci numbers which are Pell numbers. This paper continues a previous work that searched for Pell numbers in the Fibonacci sequence.

LIOUVILLE THEOREMS FOR THE MULTIDIMENSIONAL FRACTIONAL BESSEL OPERATORS

  • Galli, Vanesa;Molina, Sandra;Quintero, Alejandro
    • Communications of the Korean Mathematical Society
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    • v.37 no.4
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    • pp.1099-1129
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    • 2022
  • In this paper, we establish Liouville type theorems for the fractional powers of multidimensional Bessel operators extending the results given in [6]. In order to do this, we consider the distributional point of view of fractional Bessel operators studied in [12].

Frege and Gödel in Knowledge Change Model ('지식변화모델' 에서 프레게와 괴델)

  • Park, Chang Kyun
    • Journal for History of Mathematics
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    • v.27 no.1
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    • pp.47-57
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    • 2014
  • This paper aims to evaluate works of Frege and G$\ddot{o}$del, who play the trigger role in development of logic, by Knowledge Change Model. It identifies where their positions are in the model respectively. For this purpose I suggest types of knowledge change and their criteria for the evaluation. Knowledge change are classified into five types according to the degree of its change: improvement, weak glorious revolution, glorious revolution, strong glorious revolution, and total revolution. Criteria to evaluate the change are its contents, influence, pervasive effects, and so forth. The Knowledge Change Model consists of the types and the criteria. I argue that in the model Frege belongs to the total revolution and G$\ddot{o}$del to the weak glorious revolution. If we accept that the revolution in logic initiated by Frege was completed by G$\ddot{o}$del, it is a natural conclusion.

Beams affected by corrosion influence of reinforcement placement in the cracking

  • Ortega, Nestor F.;Rivas, Irene E.;Aveldano, Raquel R.;Peralta, Maria H.
    • Structural Engineering and Mechanics
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    • v.37 no.2
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    • pp.163-175
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    • 2011
  • The results of experimental and numerical investigations on reinforced concrete beams, with different longitudinal rebars affected by corrosive processes are presented in this paper. Different diameters and/or different distributions of longitudinal rebars were employed keeping constant the total section in each analyzed case, (maintaining a constant stirrup diameter and distribution). The rebars were subjected to accelerated corrosion in the experimental study. Electrochemical monitoring of the process, periodic measuring of the cover cracking and gravimetry of the rebars were performed through the test. Some building recommendations are obtained in order to be considered by designers of concrete structures. The numerical simulation was carried out through the application of the Finite Element Method (FEM), employing plane models, and using linear-elastic material model. The cracking process was associated with the evolution of the tensile stresses that were originated. This numerical methodology allows the monitoring of the mechanical behavior until the beginning of the cracking.

Damaging wind storms in North Eastern Argentina: seven case studies

  • Natalini, Bruno;Lassig, Jorge L.;Natalini, Mario B.;Palese, Claudia
    • Wind and Structures
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    • v.15 no.2
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    • pp.147-162
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    • 2012
  • Argentina is a large country with several areas dominated by different climate mechanisms. Since 2008, damage to civil structures caused by strong winds has been surveyed in Chaco and the neighbouring areas. Chaco is a province of NEA, the north-east region of the Argentina, which also includes the provinces of Formosa, Corrientes and Misiones. The strong wind events in NEA are related to severe convective storms. In this work, we present findings about wind-induced damage in NEA and the prevailing meteorological conditions. We emphasise seven particular cases for which the conditions of the atmosphere were reconstructed through reanalysis.

Nonlinear earthquake capacity of slender old masonry structures prestressed with steel, FRP and NiTi SMA tendons

  • Preciado, Adolfo;Ramirez-Gaytan, Alejandro;Gutierrez, Nayar;Vargas, David;Falcon, Jose Manuel;Ochoa, Gil
    • Steel and Composite Structures
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    • v.26 no.2
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    • pp.213-226
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    • 2018
  • This paper focuses on the seismic protection of slender old masonry structures by the implementation of prestressing devices at key locations. The devices are vertically and externally located inside the towers in order to be reversible and calibrated. An extensive parametric study on a selected slender tower is carried out based on more than 100 nonlinear static simulations aimed at investigating the impact of different parameters on the seismic performance: (i) different prestressing levels; (ii) shape memory alloy superelasticity and (iii) changes in prestressing-forces in all the stages of the analysis until failure and masonry toe crushing. The tendon materials under analysis are conventional prestressing steel, fiber-reinforced polymers of different fibers and shape memory alloys. The parametric study serves to select the most suitable prestressing device and optimal prestressing level able to dissipate more earthquake energy. The seismic energy dissipation is evaluated by comparing the structural capacity curves in original state and retrofitted.

Homeodomain-leucine Zipper Proteins Interact with a Plant Homologue of the Transcriptional Co-activator Multiprotein Bridging Factor 1

  • Zanetti, Maria Eugenia;Chan, Raquel L.;Godoy, Andrea V.;Gonzalez, Daniel H.;Casalongue, Claudia A.
    • BMB Reports
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    • v.37 no.3
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    • pp.320-334
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    • 2004
  • StMBF1 (Solanum tuberosum multiprotein bridging factor 1) is a plant member of the MBF1 family of transcriptional co-activators. In an attempt to understand the role of StMBF1, we analyzed its interaction with plant transcription factors of the homeodomain-leucine zipper (Hd-Zip) family, a group of proteins with a typical leucine zipper motif adjacent to a homeodomain. StMBF1 is able to interact in vitro with the Hd-Zip protein Hahb-4 both in the presence and absence of DNA. Upon binding, StMBF1 increases the DNA binding affinity of Hahb-4, and of another plant homeodomain containing protein from the GL2/Hd-Zip IV family, HAHR-1. The biological role of interactions is discussed in this paper.