• Title/Summary/Keyword: IT Relatedness

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Phylogenetic Analysis of Dendropanax morbifera Using Nuclear Ribosomal DNA Internal Transcribed Spacer (ITS) Region Sequences (Internal transcribed spacer (ITS) region의 염기서열 분석에 의한 보길도산 황칠나무의 분자 계통학적 연구)

  • Shin, Yong Kook
    • Journal of Life Science
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    • v.26 no.11
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    • pp.1341-1344
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    • 2016
  • Dendropanax morbifera is an endemic tree species of Korea, it is restricted to the southern parts of Korea. The internal transcribed spacer (ITS) region of nuclear ribosomal DNA (nrDNA) for Dendropanax morbifera grown at Bogil-do, Korea was determined. We investigated the sequence-based phylogenetic relationships of plants related and clarified its taxonomical position. The determined sequences consisted of 689 residues. ITS1 was 222 bp long while ITS2 was 233 bp long. The 5.8S rDNA was 160 bp long. The ITS region sequences of the Dendropanax species included in this study were obtained from GenBank. Oreopanax polycephalus was used as the outgroup. A pairwise alignment was calculated using the Clustal X program. A phylogenetic tree was constructed by the neighbor-joining method using the Tree view program. Sequence similarities among species including D. morbifera Bogil-do isolate showed the range 92.6 to 99.7% in sequence-based phylogenetic analysis using total 615 base pairs of ITS1, 5.8S rDNA and ITS2. D. morbifera Bogil-do isolate exhibited the highest degree of relatedness to D. chevalieri, sharing 99.7% ITS region similarity. D. morbifera Bogil-do isolate also showed to D. trifidus, sharing 99.4% ITS region similarity.

Close relatedness of Acanthomoeba pintulosa with Accnthcmoebc palestinensis based on isoenzyme profiles and rDNA PCR-RFLP patterns (Acanthamoeba pustulosa와 A. palestinensis의 동위효소 및 rDNA PCR-RFLP 양상의 유사성)

  • 김영호;옥미선
    • Parasites, Hosts and Diseases
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    • v.34 no.4
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    • pp.259-266
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    • 1996
  • The taxonomic validity of morphological group III Accnthamoeba app. is uncertain. In the present study. six type strains of group III Aconthamoeba spry. , A. culbertsoni, A. heniyi, A. pustulosc, A. palestinensis, A. royrebn and A. lenticulnto were subjected for the evaluation or their taxonomic validity by comparison of the isoeneyme patterns by isoelectic focusing on polyacrylamide gels, mitochondrial DNA (Mt DNA) restriction fragment length polymorphism (RFLP) . and small subunit ribosomal DNA (ssu rDNA) PCR-RFLP patterns. The Mt DNA RFLP patterns were heterogeneous between the species. The type strains of A. pclestinensls and A. pustulosc showed almost identical patterns of isoenrymes and rDNA PCR-RFLP with an estimated sequence divergence of 2.6%. The other species showed heterogeneous patterns of isoenxymes and rDNA PCR- RFLP. It is likely that A. pustuLosc is closely related with A. palestinensis and that the former may be regarded as a junior synonym of the latter.

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Halobacillus blutaparonensis sp. nov., a Moderately Halophilic Bacterium Isolated from Blutaparon portulacoides Roots in Brazil

  • Barbosa Deyvison Clacino;Bae Jin-Woo;Weid Irene Von Der;Vaisman Natalie;Nam Young-Do;Chang Ho-Won;Park Yong-Ha;Seldin Lucy
    • Journal of Microbiology and Biotechnology
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    • v.16 no.12
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    • pp.1862-1867
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    • 2006
  • A moderately halophilic, Gram-positive, spore-forming bacterium was isolated from the roots of Blutaparon portulacoides, a plant found in sandy soil parallel to the beach line in Restinga de Jurubatiba, Rio de Janeiro, Brazil. The strain, designated $M9^T$, was motile and strictly aerobic with rod-shaped cells. It grew in the absence of NaCl and up to 20% NaCl, and was able to hydrolyze casein and starch. Strain $M9^T$ had a cell-wall peptidoglycan based on L-Orn-D-Asp, the predominant menaquinone present was menaquinone-7 (MK-7), diaminopimelic acid was not found, and anteiso-$C_{15:0}$ and iso-$C_{15:0}$ were the major fatty acids. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain $M9^T$ belonged to the genus Halobacillus and exhibited 16S rRNA gene similarity levels of 97.8-99.4% with the type strains of the other nine Halobacillus species. The DNA-DNA relatedness of strain $M9^T$ with H. trueperi, the closest relative as regards 16S rRNA gene similarity, and H. locisalis was 21% and 18%, respectively. Therefore, on the basis of phenotypic, genotypic, and phylogenetic data, strain $M9^T$ (=ATCC BAA-$1217^T$, =CIP $108771^T$, =KCTC $3980^T$) should be placed in the genus Halobacillus as a member of a novel species, for which the name Halobacillus blutaparonensis sp. nov. is proposed.

Automatic Recommendation of Panel Pool Using a Probabilistic Ontology and Researcher Networks (확률적 온톨로지와 연구자 네트워크를 이용한 심사자 자동 추천에 관한 연구)

  • Lee, Jung-Yeoun;Lee, Jae-Yun;Kang, In-Su;Shin, Suk-Kyung;Jung, Han-Min
    • Journal of the Korean Society for information Management
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    • v.24 no.3
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    • pp.43-65
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    • 2007
  • Automatic recommendation system of panel pool should be designed to support universal, expertness, fairness, and reasonableness in the process of review of proposals. In this research, we apply the theory of probabilistic ontology to measure relatedness between terms in the classification of academic domain, enlarge the number of review candidates, and rank recommendable reviewers according to their expertness. In addition, we construct a researcher network connecting among researchers according to their various relationships like mentor, coauthor, and cooperative research. We use the researcher network to exclude inappropriate reviewers and support fairness of reviewer recommendation process. Our methodology recommending proper reviewers is verified from experts in the field of proposal examination. It propose the proper method for developing a resonable reviewer recommendation system.

Identification and Characterization of Agar-degrading Vibrio sp. GNUM08123 Isolated from Marine Red Macroalgae (한천분해 미생물 Vibrio sp. GNUM08123의 동정 및 agarase 생산의 발효적 특성)

  • Chi, Won-Jae;Kim, Yoon Hee;Kim, Jong-Hee;Hong, Soon-Kwang
    • Microbiology and Biotechnology Letters
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    • v.45 no.3
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    • pp.243-249
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    • 2017
  • An agar-degrading bacterium, designated as the GNUM08123 strain, was isolated from samples of red algae collected from the Yongil Bay near East Sea, Korea. The isolated GNUM08123 strain was gram-negative, aerobic, motile, and beige-pigmented, with $C_{16:0}$ (25.9%) and summed feature 3 (comprising $C_{16:1}{\omega}7c/iso-C_{15:0}2-OH$, 34.4%) as its major cellular fatty acids. A similarity search based on the 16S rRNA gene sequence revealed that it belonged to class Gammaproteobacteria and shared 97.7% similarity with the type strain Vibrio chagasii $R-3712^T$. The DNA G+C content of strain $GNUM08123^T$ was 46.9 mol%. The major isoprenoid quinone was ubiquinone-8. The results of DNA-DNA relatedness and 16S rRNA sequence similarity analyses, in addition to its phenotypic and chemotaxonomic characteristics, suggest that strain GNUM08123 is a novel species within genus Vibrio, designated as Vibrio sp. GNUM08123. Agarase production by strain GNUM08123 was induced by agar and sucrose, but was repressed probably owing to carbon catabolite repression by glucose and maltose.

An Investigation of Science-related Activities Perceived by Elementary School Students (초등학생들이 인식하는 과학 관련 활동에 대한 조사)

  • Yang, Chanho;Bae, Yujin;Kim, Chan-Jong;Choe, Seung-Urn;Kim, Heui-Baik;Yoo, Junehee;Yi, Kyung-Woo;Kye, Young Hee;Noh, Teahee
    • Journal of Korean Elementary Science Education
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    • v.32 no.4
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    • pp.515-526
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    • 2013
  • In this study, we investigated science-related activities in everyday life perceived by elementary school students, and their preference and participation in the activities. We also analyzed the differences by student's gender and interest in science. We developed a questionnaire of what activities elementary school students participated in daily experiences and how they perceived the connections of the activities with science. The questionnaire that was asked to rate the degrees of science-relatedness, preference, and participation of 35 activities was administered to fifth graders. The analysis of the results revealed that they perceived various everyday activities in their home and community as well as school were related to science. They generally preferred and participated in the activities. Boys perceived some activities, such as building things with magnets, Legos, or other toy and tools, more closely related to science, and the degrees of their preference and participation in these activities were higher than those of girls. It was also found that the students who were more interested in science not only perceived more activities related to science but also preferred and participated in the activities more. Educational implications of these findings are discussed.

How Does Technological Convergence Influence Firm Performance?: A Case Study of Automobile Firms Adopting Aircraft Technologies (기술 융합이 기업 성과에 미치는 영향: 항공기 기술을 사용한 자동차 기업을 중심으로)

  • Park, Junwoo;Moon, Seongwuk
    • Journal of Technology Innovation
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    • v.25 no.3
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    • pp.197-231
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    • 2017
  • We investigate the effect of technology convergence and spillover on firm performance. In doing so we specifically examine how automobile firms adapting aircraft technologies perform in stock market and product market. In order to use technology convergence and spillover, we investigate the patent citation relationship between aircraft and automobile related patents and construct the measures on automobile firms' adaptation of aircraft technologies. We also measure automobile firms' performance based on market value of firms in the stock market and revenues in product market. We find that the market value increases as automobile firms use the knowledge of aircraft technologies more. However, there is no relationship between the use of the aircraft technology and the revenue of automobile firms. This suggests that the use of advance aircraft technology plays a positive signaling role in financial market while it is not associated with generating revenues in product market.

Statistical Analysis of Water Quality in the Downstream of the Han River (한강하류부 수질의 통계학적 해석)

  • 백경원;정용태;한건연;송재우
    • Water for future
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    • v.29 no.2
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    • pp.179-190
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    • 1996
  • The characteristics of water quality in the downstream of the Han River were analyzed by statistical techniques. Basic characteristics, areal and temporal variations, and correlations of water quality data were investigated. Monthly water quality data have been investigated systematically by exploring data analysis, including time series plot, summary statistics, distribution test, time dependence test, seasonality test and flow relatedness test. Results show that water quality data in this river have seasonality. And applicability of stochastic models such as Thomas-Fiering model and ARMA(1,1) model was identified. From the examination of water quality data related to discharge, it was found that DO and SS are sensitive to water temperature rather than discharge, while BOD and COD are sensitive to discharge at dry seasons. Seasonal periodicities were identified in all water quality variables from the cross correlation analysis.

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Evaluation of Genetic Diversity among Soybean Genotypes Using SSR and SNP

  • Lee, Suk-Ha;P. Tanya;O, Srinives;T. Toojinda;A. Vanavichit;Ha, Bo-Keun;Bae, Jeong-Suk;Moon, Jung-Kyung
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.46 no.4
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    • pp.334-340
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    • 2001
  • Two different types of molecular markers, simple sequence repeat (SSR) and single nucleotide polymorphism (SNP), were used to measure genetic diversity among five Korean, eight Thai, and three wild soybeans. For SSR analysis, a total of 20 markers were surveyed to detect polymorphisms. For SNP analysis, four primers were designed from consensus sequence regions on disease resistance protein homolog genes, and used to amplify the genomic region. The PCR products were sequenced. A number of polymorphic SSR and SNP bands were scored on all genotypes and their genetic similarity was measured. Clustering analysis was performed independently on both types of markers. Clustering based on SSR markers separated the genotypes into three main groups originated from Korea, Thailand, and wild soybeans. On the other hand, two main groups were classified using SNP analysis. It seemed that SSR was more informative than SNP in this study. This may be due to the fact that SNP was surveyed on the smaller genomic region than SSR. Grouping based on the combined data of both markers revealed similar results to that of SNP rather than that of SSR. This might be due to the fact that more loci from SNP were considered to measure genetic relatedness than those from the SSR.

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A Study on the Clustering Technique Associated with Statistical Term Relatedness in Information Retrieval (정보검색(情報檢索)에 있어서 용어(用語)의 통계적(統計的) 관련성(關聯性)을 응용(應用)한 클러스터링기법(技法))

  • Jeong, Jun-Min
    • Journal of Information Management
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    • v.18 no.4
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    • pp.98-117
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    • 1985
  • At the present time, the role and importance of information retrieval has greatly increased for two main reasons: the coverage of the searchable collections is now extensive and collection size may exceed several million documents; further more, the search results can now be obtained more or less instantaneously using online procedures and computer terminal devices that provide interaction and communication between system and users. The large collection size make it plausible to the users that relevant information will in fact be retrieved as a result of a search operation, and the probability of obtaining the search output without delay creates a substantial user demand for the retrieval services.

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