• 제목/요약/키워드: IDH

검색결과 56건 처리시간 0.021초

Cyanobacterium Synechocystis sp.PCC6803 psaB 돌연변이주의 광합성 전자전달에 미치는 호흡의 영향 (Influence of Respiration on Photosynthetic Electron Transport in psaB Mutants from Cyanobacterium Synechocystis sp. PCC6803)

  • 윤병철;장남기
    • 아시안잔디학회지
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    • 제11권1호
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    • pp.59-72
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    • 1997
  • The influence of respiration on photosythetic electron transport were investigated in the Wid type and psaB mutants from Syneehocystis sp. PCC6803. The amount of glucose uptake in the wild type was proportional to the glucose concentration added in wild type and less than that of psaB mutants in the dark. It was suggested that psaB mutants more depend on the glucose than the wild type. It was investigated how the activities of isocitrate dehydrogenase(IDH) and glucose-6-phos-phate dehydrogenase(G6PDH) were changed. The activities of IDH were very low. While, the ac-tivities of G6PDH were much higher than that of IDH. These results agree to the reports that ex-ogenous glucose was dismilated aerobically via Oxidative Pentose Phosphate Pathway in heterotrophic cyanobacteria. PsaB mutants showed high G6PDH activity in the presence of glucose as well as in the dark and high respiratory activities especially in the dark. It was also investigated how photosynthetic electron transport activities were changed. PsaB mutants showed higher photosynthetic electron tranasport activities than wild type in the presence of glucose as well as in the dark. In the results, it was proposed that photosynthetic electron transport between PS I and PS U was complemented by respiratory electron transport through the NADPH generated by Dxidative Pentose Phophate Pathway in psaB mutant from Synechocystis sp. PCC6803. Key words: Photosynthetic electron transport, Respiration, Synechoystis sp. PCC6803, psaB mutant, Glucose uptake, IDH, G6PDH, Respiratory electron transport activity.

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Cloning and Characterization of the $_L$-Lactate Dehydrogenase Gene (IdhL) from Lactobacillus reuteri ATCC 55739

  • Park, Jar-Yong;Park, Sun-Jung;Nam, Su-Jin;Ha, Yeong-Lae;Kim, Jeong-Hwan
    • Journal of Microbiology and Biotechnology
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    • 제12권5호
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    • pp.716-721
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    • 2002
  • The ldhL gene encoding the $_L$-(+) lactate dehydrogenase was cloned from Lactobacillus reuteri ATCC 55739 chromosomal DNA and characterized. An internal 750-bp fiagment of ldhL gene was amplified by PCR using primers based on the conserved region of lactobacilli ldhL genes. A genomic library off. reuteri ATCC 55739 was constructed using pBR322, and colony hybridization experiments were performed using the 750-bp fragment as aprobe. One clone harboring a 4.0-kb PstI fragment was identified, and nucleotide sequencing confirmed it as an open reading frame of 972 bp in size in the middle. In addition to IdhL gene, an ORF homologous to Streptococcus pneumoniae TIGR4 hydrolase gene and 3' part of phosphomevalonate kinase gene (mvaK2) were also found on the 4 kb fragment. $_L$-LDH of L. reuteri ATCC 55739 showed the highest degree of homology with the $_L$-LDH of Pediococcus acidilactici (62.4%), fullowed by the $_L$-LDH of Lactobacillus pentosus (58.7%). The size of IdhL transcript determined by Northern blot was 1 kb, indicating the monocistronic nature of IdhL.

연어류에서의 종간교배 및 Isozyme Pattern에 관한 연구 (Isozyme Patterns at Five Loci Salmonids and Their Hybrid(I))

  • 홍경표;명정구;김병기;손진기
    • 한국수정란이식학회지
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    • 제7권1호
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    • pp.31-39
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    • 1992
  • 연어류의 종간교배 실험과 LDH, MDH, IDH, $\alpha$GODH, ME 등 다섯가지 isozyme에 대한 genetic marker로서의 활용 가능성을 알아보고자 1차적으로 연어, 산천어 및 무지개송어를 이용하여 종간교배를 실시하였고 이들 세종의 isozyme pattern을 비교하였다. 교배실험은 종간교배, 및 allotriploid 구간 등 12구간으로 나누어 실시하였으며 연어 암컷과 산천어 수컷의 교배결과가 초기성장 단계적에서 가장 우수하게 나타났고이들의 allotriploid도 부활율이 28.1%로 가장 우수하였다. Genetic identification을 위한 isozyme loci 분석결과 연어와 산천어는 대부분의 loci에서 거의 찾아볼 수 없었고 무지개송어는 MDH-B와 IDH에서 다형현상을 확인할 수 있었다. 특히 MDH-B loci는 b 유전자의 출현 빈도에서 세 종간의 식별이 가능하였으며, IDH pattern을 산천어와 무지개송어의 비교에 유효한 것으로 나타났다. 이들 두 loci는 hybrid의 genotype 분석시 유용한 marker로 활용할 수 있는 가능성을 보였고, 앞으로의 어류 육종에 좋은 기초 자료로 이용될 것으로 사료된다.

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열자극에 따른 효모 ( Saccharomyces cerevisiae ) 의 Isocitrate Dehydrogenase 와 Glutamate Dehydrogenase 의 활성도 및 유리 아미노산의 변화 (Changes in the Activities of Isocitrate Dehydrogenase and Glutamate Dehydrogenase and in Free Amino Acid Pool by Heat Shock in Saccharomyces cerevisiae)

  • Kim, Hak-Hyeon;Nam-Kee Chang
    • The Korean Journal of Ecology
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    • 제14권1호
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    • pp.75-85
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    • 1991
  • Changes in the activities of isocitrate dehydrogenase (IDH) and glutamate dehydrogenase (GDH) and changes in free amino acids in the cytoplasm of Saccharomyces cerevisiae have been studied under heat shock condition. Heat shock conditions led to a significant decrease of NAD-IDH and NAD-GDH, It was shown appeared that the meaningful patterns of increase of NADP-IDH and NADP-GDH. It suggested that heat shock in yeast leads to a splitting of the TCA cycle and that glutamate synthesis takes place through the coupling of the NADP-linked isocirate and glutamate dehydrogenase. It was shown that about 14% of total free amino acids of yeast cells was decreased by heat shock. Especially heat shock condition resulted in the marked decreases of serine family amino acids such as serine, glycine and cysteine, and in the considerable increases of the rates of methionine, alanine, glutamin.

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Isozyme을 이용한 Pythium species의 비교 및 Pythium systematics에의 이용 (Comparisons of Isozyme Patterns in Pythium Species and Application to Pythium Systematics)

  • 이윤수
    • 한국균학회지
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    • 제21권4호
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    • pp.293-300
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    • 1993
  • Enzyme AAT, GmDH, ME, GPI, LDH 그리고 IDH에 대해 각각 아홉, 일곱. 넷, 아홉, 일곱 그리고 네개의 서로 다른 phenotype이 관찰되었다. Sugarcane field에서 분기한 종명이 밝혀지지 않은 여섯개의 sterile isolate 모두 여섯개의 enzyme에 대해 동일한 위치에 band를 형성하였다. 이 phenotype들은 이미 밝혀진 Pythium species와는 다른 위치에서 band를 형성하였다. 종명이 밝혀지지 않은 Pythium isolate중 isolate 145와 299는 여섯개의 enzyme에 대해서 동일한 위치에서 band가 형성되었고, 다른 isolate들은 다른 위치에서 band를 형성하였다. 다섯개의 Pythium heterothallicum isolate들은 IDH를 제외한 모든 enzyme에 대해서 동일한 위치에서 band를 형성하였다. 두개 그리고 세개의 P. torulosum isolate가 AAT, GmDH 그리고 ME와 GPI,LDH 그리고 IDH 에 대해 각각 동일한 위치에 band를 형성하였다. 한개의 P. spinosum 과 P. irregulare isolate 각각이 enzyme AAT, GmDH 그리고 GPI에 대해 동일한 위치에 band를 형성하였다. 결론적으로, sterile Pythium isolate 들은 intraspecies level에서는 similarity 가 100%였지만, P. heterothallicum 그리고 Pythium spinosum과는 무관함이 밝혀졌고 isolate 306 을 제외한 다른 Pythium species들과는 전반적으로 낮은 상관성을 나타내었다 . 서로 다른 species간의 상관성은 몇몇 경우를 제외하고는 전반적으로 매우 낮았다.

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Comparison of Genetic Profiles and Prognosis of High-Grade Gliomas Using Quantitative and Qualitative MRI Features: A Focus on G3 Gliomas

  • Eun Kyoung Hong;Seung Hong Choi;Dong Jae Shin;Sang Won Jo;Roh-Eul Yoo;Koung Mi Kang;Tae Jin Yun;Ji-hoon Kim;Chul-Ho Sohn;Sung-Hye Park;Jae-Kyoung Won;Tae Min Kim;Chul-Kee Park;Il Han Kim;Soon-Tae Lee
    • Korean Journal of Radiology
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    • 제22권2호
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    • pp.233-242
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    • 2021
  • Objective: To evaluate the association of MRI features with the major genomic profiles and prognosis of World Health Organization grade III (G3) gliomas compared with those of glioblastomas (GBMs). Materials and Methods: We enrolled 76 G3 glioma and 155 GBM patients with pathologically confirmed disease who had pretreatment brain MRI and major genetic information of tumors. Qualitative and quantitative imaging features, including volumetrics and histogram parameters, such as normalized cerebral blood volume (nCBV), cerebral blood flow (nCBF), and apparent diffusion coefficient (nADC) were evaluated. The G3 gliomas were divided into three groups for the analysis: with this isocitrate dehydrogenase (IDH)-mutation, IDH mutation and a chromosome arm 1p/19q-codeleted (IDHmut1p/19qdel), IDH mutation, 1p/19q-nondeleted (IDHmut1p/19qnondel), and IDH wildtype (IDHwt). A prediction model for the genetic profiles of G3 gliomas was developed and validated on a separate cohort. Both the quantitative and qualitative imaging parameters and progression-free survival (PFS) of G3 gliomas were compared and survival analysis was performed. Moreover, the imaging parameters and PFS between IDHwt G3 gliomas and GBMs were compared. Results: IDHmut G3 gliomas showed a larger volume (p = 0.017), lower nCBF (p = 0.048), and higher nADC (p = 0.007) than IDHwt. Between the IDHmut tumors, IDHmut1p/19qdel G3 gliomas had higher nCBV (p = 0.024) and lower nADC (p = 0.002) than IDHmut1p/19qnondel G3 gliomas. Moreover, IDHmut1p/19qdel tumors had the best prognosis and IDHwt tumors had the worst prognosis among G3 gliomas (p < 0.001). PFS was significantly associated with the 95th percentile values of nCBV and nCBF in G3 gliomas. There was no significant difference in neither PFS nor imaging features between IDHwt G3 gliomas and IDHwt GBMs. Conclusion: We found significant differences in MRI features, including volumetrics, CBV, and ADC, in G3 gliomas, according to IDH mutation and 1p/19q codeletion status, which can be utilized for the prediction of genomic profiles and the prognosis of G3 glioma patients. The MRI signatures and prognosis of IDHwt G3 gliomas tend to follow those of IDHwt GBMs.

누룩뱀(Elaphe diane) 자연집단의 체전적 변리에 관하여 (Genetic Variation in Natural Populations of the Cat-Snake (Elaphe dome))

  • 백남극;양서영
    • 한국동물학회지
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    • 제30권3호
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    • pp.211-221
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    • 1987
  • Starch gel electrophoresis was used to estimate the degree of genic variation and genetic relatedness among twelve populations of the Cat-Sanke(Elaphe diene) in Korea. Out of the 17 loci examined 9 loci (Mdh-2, Ldh-1, Ldh-2, Idh-1, Idh-2, Adh, Aco-3, ep, Got-1) were monomorphic with identical mobility in all populations, 4 loci (Pgm, Mpi, Pept-1, Got-2) were nearly identical with minor allele frequency differences, and 4 loci (Mdh-1, Fgi, Est-2, 6psd) showed moderate variation. Levels of genic variation were similar to those found for other reptilian species. The mean genetic similarity value(S) among twelve populations is 0.966. Chechu population was slightly remote genetically from the mainland populations.

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무지개송어와 은연어간 잡종3배체의 부화자어에 대한 동위효소 분석 (Isozyme Analysis on the Allotriploid between Rainbow Trout (Oncorhynchus mykiss) and Coho Salmon (O. kisutch))

  • 홍경표;명정구;김병기;손진기
    • 한국수산과학회지
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    • 제29권2호
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    • pp.256-261
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    • 1996
  • 본 연구는 우리나라의 대표적인 연어과 어류인 은연어, 무지개송어 및 그 잡종3배체의 부화자어에 있어서의 동위효소를 분석하여 부화후 초기의 유전적 특징과 유전현상을 규명하고 이를 토대로 이들 종 및 잡종의 식별을 위한 genetic marker를 찾아보고자 5개의 동위효소에 대한 분석을 실시하였다. 이들 중 PGI에서는 종간 차이를 나타내지 않은 반면에 LDH, MDH, IDH 및 PGM 등은 은연어와 무지개송어간에 종 특이적 pattern을 나타내었는데 이는 이들 어종간의 발생 초기에 종의 식별을 위한 유전적 marker로써 유용한 것으로 판단되며, 또한 잡종 및 잡종3배체의 genetic marker로서도 상기 네 가지의 동위효소는 유용한 것으로 나타났다.

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Qualitative and Quantitative Magnetic Resonance Imaging Phenotypes May Predict CDKN2A/B Homozygous Deletion Status in Isocitrate Dehydrogenase-Mutant Astrocytomas: A Multicenter Study

  • Yae Won Park;Ki Sung Park;Ji Eun Park;Sung Soo Ahn;Inho Park;Ho Sung Kim;Jong Hee Chang;Seung-Koo Lee;Se Hoon Kim
    • Korean Journal of Radiology
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    • 제24권2호
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    • pp.133-144
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    • 2023
  • Objective: Cyclin-dependent kinase inhibitor (CDKN)2A/B homozygous deletion is a key molecular marker of isocitrate dehydrogenase (IDH)-mutant astrocytomas in the 2021 World Health Organization. We aimed to investigate whether qualitative and quantitative MRI parameters can predict CDKN2A/B homozygous deletion status in IDH-mutant astrocytomas. Materials and Methods: Preoperative MRI data of 88 patients (mean age ± standard deviation, 42.0 ± 11.9 years; 40 females and 48 males) with IDH-mutant astrocytomas (76 without and 12 with CDKN2A/B homozygous deletion) from two institutions were included. A qualitative imaging assessment was performed. Mean apparent diffusion coefficient (ADC), 5th percentile of ADC, mean normalized cerebral blood volume (nCBV), and 95th percentile of nCBV were assessed via automatic tumor segmentation. Logistic regression was performed to determine the factors associated with CDKN2A/B homozygous deletion in all 88 patients and a subgroup of 47 patients with histological grades 3 and 4. The discrimination performance of the logistic regression models was evaluated using the area under the receiver operating characteristic curve (AUC). Results: In multivariable analysis of all patients, infiltrative pattern (odds ratio [OR] = 4.25, p = 0.034), maximal diameter (OR = 1.07, p = 0.013), and 95th percentile of nCBV (OR = 1.34, p = 0.049) were independent predictors of CDKN2A/B homozygous deletion. The AUC, accuracy, sensitivity, and specificity of the corresponding model were 0.83 (95% confidence interval [CI], 0.72-0.91), 90.4%, 83.3%, and 75.0%, respectively. On multivariable analysis of the subgroup with histological grades 3 and 4, infiltrative pattern (OR = 10.39, p = 0.012) and 95th percentile of nCBV (OR = 1.24, p = 0.047) were independent predictors of CDKN2A/B homozygous deletion, with an AUC accuracy, sensitivity, and specificity of the corresponding model of 0.76 (95% CI, 0.60-0.88), 87.8%, 80.0%, and 58.1%, respectively. Conclusion: The presence of an infiltrative pattern, larger maximal diameter, and higher 95th percentile of the nCBV may be useful MRI biomarkers for CDKN2A/B homozygous deletion in IDH-mutant astrocytomas.