• Molecular & Cellular Toxicology
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• v.1 no.4
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• pp.281-283
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• 2005

Extraction of biologically meaningful data and their validation are very important for toxicogenomics study because it deals with huge amount of heterogeneous data. BINGO is an annotation mining tool for biological interpretation of gene groups. Several statistical modeling approaches using Gene Ontology (GO) have been employed in many programs for that purpose. The statistical methodologies are useful in investigating the most significant GO attributes in a gene group, but the coherence of the resultant GO attributes over the entire group is rarely assessed. BINGO complements the statistical methods with graph-theoretic measures using the GO directed acyclic graph (DAG) structure. In addition, BINGO visualizes the consistency of a gene group more intuitively with a group-based GO subgraph. The input group can be any interesting list of genes or gene products regardless of its generation process if the group is built under a functional congruency hypothesis such as gene clusters from DNA microarray analysis.

• International Journal of Contents
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• v.17 no.3
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• pp.1-14
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• 2021

Since the outbreak of the coronavirus disease 2019 (COVID-19) pandemic, a lot of efforts have been made in the field of data science to help combat against this disease. Among them, forecasting the number of cases of infection is a crucial problem to predict the development of the pandemic. Many deep learning-based models can be applied to solve this type of time series problem. In this research, we would like to take a step forward to incorporate spatial data (geography) with time series data to forecast the cases of region-level infection simultaneously. Specifically, we model a single spatio-temporal graph, in which nodes represent the geographic regions, spatial edges represent the distance between each pair of regions, and temporal edges indicate the node features through time. We evaluate this approach in COVID-19 in a Korean dataset, and we show a decrease of approximately 10% in both RMSE and MAE, and a significant boost to the training speed compared to the baseline models. Moreover, the training efficiency allows this approach to be extended for a large-scale spatio-temporal dataset.

• International journal of advanced smart convergence
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• v.12 no.2
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• pp.34-46
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• 2023

A growing number of large scale knowledge graphs raises several issues how knowledge graph data can be organized, discovered, and integrated efficiently. We present a novel semantic-based mashup platform for contents convergence which consists of acquisition, RDF storage, ontology learning, and mashup subsystems. This platform servers a basis for developing other more sophisticated applications required in the area of knowledge big data. Moreover, this paper proposes an entity matching method using graph convolutional network techniques as a preliminary work for automatic classification and discovery on knowledge big data. Using real DBP15K and SRPRS datasets, the performance of our method is compared with some existing entity matching methods. The experimental results show that the proposed method outperforms existing methods due to its ability to increase accuracy and reduce training time.

• KIPS Transactions on Software and Data Engineering
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• v.1 no.3
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• pp.159-168
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• 2012

Relation in the new IT environment, such as the SNS, Cloud, Web3.0, has become an important factor. And these relations generate a transaction. However, existing relational database and graph database does not processe graph structure representing the relationships and transactions. This paper, we propose the technique that can be processed concurrently graph structures and transactions in a scalable complex network system. The proposed technique simultaneously save and navigate graph structures and transactions using the Topic Maps data model. Topic Maps is one of ontology language to implement the semantic web(Web 3.0). It has been used as the navigator of the information through the association of the information resources. In this paper, the architecture of the proposed technique was implemented and design using Cassandra - one of column type NoSQL. It is to ensure that can handle up to Big Data-level data using distributed processing. Finally, the experiments showed about the process of storage and query about typical RDBMS Oracle and the proposed technique to the same data source and the same questions. It can show that is expressed by the relationship without the 'join' enough alternative to the role of the RDBMS.

• Journal of KIISE:Information Networking
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• v.32 no.2
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• pp.261-277
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• 2005

We propose the PAD (Power Aware Data-centric Routing Protocol), which finds minimum energy routes and prolongs network life-time, for the data-centric sensor networks. Firstly, the PAD discovers the minimum energy Property graph by removing redundant communication links. The proposed a1gorithm to find the minimum energy property graph is faster, simpler and easier to implement than existing aIgorithms. Secondly, the PAD runs the DDBF (Distributed Data-centric Bellman-Ford Algorithm) to determine routing paths between a base node and all sensor nodes. The DDBF selves the drawbacks of the distributed bellman-ford algorithm, i.e. slow convergence and a possible cyclic routing path. Since the PAD is a fully distributed algorithm with low overhead, it can be used in various kinds of resource limited sensor network applications.

• Environmental and Resource Economics Review
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• v.12 no.4
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• pp.687-708
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• 2003

The purpose of this paper is to introduce time-series causality analysis by combining time-series technique with graph theory. Vector autoregressive (VAR) models can provide reasonable interpretation only when the contemporaneous variables stand in a well-defined causal order. We show that how graph theory can be applied to search for the causal structure In VAR analysis. Using Maryland crop cash prices and CBOT futures price data, we estimate a VAR model with directed acyclic graph analysis. This expands our understanding the degree of interconnectivity between the employed time-series variables.

• ETRI Journal
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• v.38 no.4
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• pp.714-723
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• 2016

Considerable attention has been given to processing graph data in recent years. An efficient method for computing the node proximity is one of the most challenging problems for many applications such as recommendation systems and social networks. Regarding large-scale, mutable datasets and user queries, top-k query processing has gained significant interest. This paper presents a novel method to find top-k answers in a node proximity search based on the well-known measure, Personalized PageRank (PPR). First, we introduce a distribution state transition graph (DSTG) to depict iterative steps for solving the PPR equation. Second, we propose a weight distribution model of a DSTG to capture the states of intermediate PPR scores and their distribution. Using a DSTG, we can selectively follow and compare multiple random paths with different lengths to find the most promising nodes. Moreover, we prove that the results of our method are equivalent to the PPR results. Comparative performance studies using two real datasets clearly show that our method is practical and accurate.

• The Journal of Information Systems
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• v.5
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• pp.149-173
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• 1996

This paper focus on the development of object-oriented model bases for Structured Modeling. For the model base organization, object modeling techniques and model typing concept which is similar to data typing concept are used. Structured modeling formalizes the notion of a definitional system as a way of dscribing models. From the object-oriented concept, a structured model can be represented as follows. Each group of similar elements(genus) is represented by a composite class. Other type of genera can be represented in a similar manner. This hierarchical class composition gives rise to an acyclic class-composition graph which corresponds with the genus graph of structured model. Nodes in this graph are instantiated to represent the elemental graph for a specific model. Taking this class composition process one step further, we aggregate the classes into higher-level composite classes which would correspond to the structured modeling notion of a module. Finally, the model itself is then represented by a composite class having attributes each of whose domain is a composite class representing one of the modules. The resulting class-composition graph represent the modular tree of the structured.

• 제어로봇시스템학회:학술대회논문집
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• 2001.10a
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• pp.55.5-55
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• 2001

The MST (Minimum Spanning Tree) matching algorithm had been used for searching the part accord points extracted from the gray level fingerprint image. The method, however, had some limitations. To obtain the relationship between enrolled and inputted fingerprint, the MST was used to generate the tree graph that represent the unique graph for given fingerprint data. From the graph, the accord points are estimated. However, the shape of the graph highly depends on the positions of the minutiae. If there are some pseudo minutiae caused by noise, the shape of the graph will be different In this paper, to overcome the limitations of the MST, we proposed CRM (Center of Rotation Method) algorithm that found the true part accord points. The proposed method is based on the assumption ...

• KIPS Transactions on Software and Data Engineering
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• v.3 no.3
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• pp.119-124
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• 2014

Let G = (V, E) be a graph. Maximum Bipartite Subgraph Problem is to convert a graph G into a bipartite graph by removing minimum number of edges. This problem belongs to NP-complete; hence, in this research, we are suggesting a new metaheuristic algorithm which combines Tabu search and GRASP.