• Title/Summary/Keyword: Geographic population

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Population Genetic Structure of the Bumblebee, Bombus ignitus (Hymenoptera: Apidae), Based on Mitochondrial COI Gene and Nuclear Ribosomal ITS2 Sequences

  • Oh, Hyung Keun;Yoon, Hyung Joo;Lee, Joo Young;Park, Jeong Sun;Kim, Iksoo
    • International Journal of Industrial Entomology and Biomaterials
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    • v.27 no.1
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    • pp.142-158
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    • 2013
  • The bumblebee, Bombus ignitus (Hymenoptera: Apidae), is a valuable natural resource that is widely utilized for greenhouse pollination in South Korea. Understanding the magnitude of genetic diversity and geographic relationships is of fundamental importance for long term preservation and utilization. As a first step, we sequenced a partial COI gene of mitochondrial DNA (mtDNA) corresponding to the "DNA barcode" region and the complete internal transcribed spacer 2 (ITS2) of nuclear ribosomal DNA from 88 individuals collected in nine South Korean localities. The complete ITS2 sequences were longest among known insects, ranging in size from 2,034 bp ~ 2,052 bp, harboring two duplicated 112-bp long repeats. The 658-bp long mtDNA sequences provided only six haplotypes with a maximum sequence divergence of 0.61% (4 bp), whereas the ITS sequences provided 84 sequence types with a maximum sequence divergence of 1.02% (21 sites). The combination of the current COI data with those of published data suggest that the B. ignitus in South Korea and China are genetically a large group, but those in Japan can be roughly separated into another group. Overall, a very high per generation migration ratio, a very low level of genetic fixation, and no discernable hierarchical population were found to exist among the South Korean populations of B. ignitus, which suggests panmixia. This finding is consistent with our understanding of the dispersal capability of the species.

GIS-Based Spatial Statistical Analysis of Risk Areas for Liver Flukes in Surin Province of Thailand

  • Rujirakul, Ratana;Ueng-arporn, Naporn;Kaewpitoon, Soraya;Loyd, Ryan J;Kaewthani, Sarochinee;Kaewpitoon, Natthawut
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.6
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    • pp.2323-2326
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    • 2015
  • It is urgently necessary to be aware of the distribution and risk areas of liver fluke, Opisthorchis viverrini, for proper allocation of prevention and control measures. This study aimed to investigate the human behavior, and environmental factors influencing the distribution in Surin Province of Thailand, and to build a model using stepwise multiple regression analysis with a geographic information system (GIS) on environment and climate data. The relationship between the human behavior, attitudes (<50%; $X_{111}$), environmental factors like population density ($148-169pop/km^2$; $X_{73}$), and land use as wetland ($X_{64}$), were correlated with the liver fluke disease distribution at 0.000, 0.034, and 0.006 levels, respectively. Multiple regression analysis, by equations OV= -0.599 + 0.005(population density ($148-169pop/km^2$); $X_{73}$) + 0.040 (human attitude (<50%); $X_{111}$) +0.022 (land used (wetland; X64), was used to predict the distribution of liver fluke. OV is the patients of liver fluke infection, R Square= 0.878, and, Adjust R Square= 0.849. By GIS analysis, we found Si Narong, Sangkha, Phanom Dong Rak, Mueang Surin, Non Narai, Samrong Thap, Chumphon Buri, and Rattanaburi to have the highest distributions in Surin province. In conclusion, the combination of GIS and statistical analysis can help simulate the spatial distribution and risk areas of liver fluke, and thus may be an important tool for future planning of prevention and control measures.

Trends in Nasopharyngeal Carcinoma Mortality in China, 1973-2005

  • Huang, Tian-Ren;Zhang, Si-Wei;Chen, Wan-Qing;Deng, Wei;Zhang, Chun-Yan;Zhou, Xin-Juan;Zhai, Ri-Hong
    • Asian Pacific Journal of Cancer Prevention
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    • v.13 no.6
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    • pp.2495-2502
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    • 2012
  • Nasopharyngeal carcinoma (NPC) is a disease with distinct ethnic and geographic distribution. The incidence of NPC in Chinese residing in Asia has declined over the last few decades, but NPC mortality trends in the entire Chinese population over time have not been systematically evaluated. In this study, we examined NPC mortality at the national level in China between 1973-2005. Mortality rates were derived from the databases of national retrospective surveys on cancer mortality conducted in the periods of 1973-1975, 1990-1992, and 2004-2005, respectively. NPC was classified according to the International classification of diseases. Age-adjusted mortality rates were calculated by direct standardization according to the world standard population. Trends in rates were evaluated by age, gender, geographic areas, and socioeconomic status. From 1973 to 2005, there was a general trend of decrease in NPC mortality in China, with higher rates in the south on a downward trend in the north. The age-standardized NPC mortality rates were 2.60 per 100,000 in 1973-1975, 1.94 per 100,000 in 1990-1992, and 1.30 per 100,000 in 2004-2005, respectively. The trend was similar in both men and women, in both urban and rural areas, but the declining rates in females were more remarkable than in males. The mortality rates were higher for the age groups above 50 years than those less than 50 years of age, both showing downward trend over 30-year period. In summary, the overall NPC mortality has consistently decreased in China over the past three decades, particularly in women and in old adults.

City center Regeneration in Busan Metropolitan Using GIS (GIS를 활용한 부산시 도심재생에 관한 연구)

  • Kim, Heung-Kwan;Yeo, Sung-Jun
    • Journal of the Korean Association of Geographic Information Studies
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    • v.10 no.1
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    • pp.205-217
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    • 2007
  • Donut phenomenon of city centers has resulted from the decreasing residential population and the fluid population with curved commercial function, but the analysis can bring other problems owing to the simplified method. And As the survey and the analysis the research can offer the characteristic methods for regeneration in the city of Busan. To figure out the functional regions of city center the research has analyzed 15 Dongs in city center of the three years of 1996, 2000 and 2004 to find out the donut phenomenon and the regeneration of city center. The survey has chosen 20 variation factors using factor analysis and cluster analysis. Major factors in each year are shown 3 factors, presenting 84.2%, 87.1% and 85.5% of the accumulated explanation rate. These factors explain residential centered, commercial centered, and management centered factor. The results are as following. First, it is necessary to plan the regeneration of the total city center owing to the total donut phenomenon regarding the functions. Second, the methods to regenerate city centers should be established according to the various regional characterizations.

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An Analysis on the Appropriation of Chemical Accident Evacuation Facility Using GIS - focused on Ulsan metropolitan city - (GIS 기법을 활용한 화학사고 대피시설의 적정성 분석 - 울산광역시를 대상으로 -)

  • SONG, Bong-Geun;LEE, Tae-Wook;KIM, Hyun-Ju;KIM, Tai-Hoon
    • Journal of the Korean Association of Geographic Information Studies
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    • v.21 no.1
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    • pp.71-82
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    • 2018
  • The purpose of this study is to minimize damage of chemical accidents through the appropriation analysis of evacuation facility position focused on Ulsan metropolitan city. For analysis, informations such as pollutant release and transfer registers(PRTR), population census, and evacuation facilities were used. After then, damage assessment of chemical accidents, accessibility and appropriation of evacuation facilities were analyzed. Damage of chemical accidents is high in around 5km of industrial complex there is dense of chemical facility and population. Evacuation facilities were mainly situated in hazard area of chemical accidents, but accessibility of evacuation facilities was vulnerable in chemical plant neighborhood. Therefore, safety check of deteriorated plants is important for prevention of chemical accidents. Also, effective evacuation plan considering capacity and scale of evacuation facilities will be established.

A Study on Changes of the Spatio-Temporal Distribution of Temperature in Korea Peninsular During the Past 40 Years (지난 40년간 한반도 기온의 시·공간적 분포 변화에 관한 연구)

  • Kim, Nam-Shin;Kim, Gyung-Soon
    • Journal of the Korean Association of Geographic Information Studies
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    • v.16 no.4
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    • pp.29-38
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    • 2013
  • This study is to construe the spatio-temporal characteristics of temperature in cities and the changes of climatical regions by analyzing a climate change in Korea peninsular. We used daily mean air temperature data which were collected in South and North climate stations for the past 34 years from 1974 to 2007. We created temperature maps of 500m resolution with Inverse Distance Weight in application with adiabatic lapse rate per month in linear relation with height and temperature. In the urbanization area, the data analyzed population in comparison with temperature changes by the year. The south climate region in Korea by the Warmth index was expanded to the middle climate region by the latitude after 1990s. A rise of mean temperature was $0.5{\sim}1.2^{\circ}C$ in urban areas such as Seoul, metropolitan and cities which had a rapid urbanization and industrialization with the population increase between 1980s and 1990s. In case of North Korea, cities such as Pyeongyang, Anju, Gaecheon, and Hesan had the same pattern.

Decision Support System Design for GIS based Construction Planning of Urban Railroad (GIS를 이용한 도시철도 건설계획수립을 위한 의사결정지원시스템 설계에 관한 연구)

  • Oh Yoon-Seuk;Koo Jee-Hee;Kim Tae-Hoon
    • Spatial Information Research
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    • v.13 no.2 s.33
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    • pp.139-155
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    • 2005
  • Today, ever growing population density in Seoul or areas near Seoul is problematic. To overcome the problem, the government tries to construct so called, 'New-towns'near Seoul to spread out the population over larger areas. But building new-towns created another problem of traffic between Seoul and New-towns. It can be solved if more public transportation systems such as urban railroads are constructed. In order to succeed in urban railroad construction, we have to make a perfect plan through in depth research on characteristics of the urban train and the construction site. In this paper, we propose a method to design the Decision Support Systems(DSS) using Geographic Information Systems(GIS) and Spatial Analysis for the planning of urban railroad construction.

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Analysis of Genetic Diversity and Population Structure of Buckwheat (Fagopyrum esculentum Moench) Landraces of Korea Using SSR Markers

  • Song, Jae-Young;Lee, Gi-An;Yoon, Mun-Sup;Ma, Kyung-Ho;Choi, Yu-Mi;Lee, Jung-Ro;Jung, Yeon-Ju;Park, Hong-Jae;Kim, Chung-Kon;Lee, Myung-Chul
    • Korean Journal of Plant Resources
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    • v.24 no.6
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    • pp.702-711
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    • 2011
  • Buckwheat (Fagopyrum esculentum Moench), one of the minor crops grown in Korea belonging to the Polygonaceae family, is an annual crop widely cultivated in Asia, Europe, and America and has a character of outcrossing and self-incompatibility. The objective of this study was to analyze the genetic variability, phylogenetic relationships and population structure of buckwheat landraces of Korea using SSR markers. Ten microsatellite markers have been detected from a total of 79 alleles among the 179 buckwheat accessions were collected from Korea. The number of allele per marker locus ($N_A$) ranged from 2 (GB-FE-001, GB-FE-043 and GB-FE-055) to 31 (GB-FE-035) with an average of 7.9 alleles. GB-FE-035 was the most polymorphic with the highest PIC value 0.93. Major allele frequencies ($M_{AF}$) for the 10 polymorphic loci varied from 0.12 to 0.97 with a mean allele frequency of 0.57. The expected heterozygosity ($H_E$) values ranged from 0.05 to 0.94 with an average of 0.53. The observed heterozygosity ($H_O$) ranged from 0.06 to 0.92 with an average of 0.42. The overall polymorphic information contents (PIC) values ranged from 0.05 to 0.93 with an average of 0.48. The landrace accessions of buckwheat used in the present study were not distinctly grouped according to geographic distribution. The study concludes that the results revealed genetic differentiation was low according to the geographic region because of outcrossing and self-incompatibility. We reported that our analyses on the genetic diversity of common buckwheat cultivars of Korea were performed by using of microsatellite markers.

Analysis of Molecular Variance and Population Structure of Sesame (Sesamum indicum L.) Genotypes Using Simple Sequence Repeat Markers

  • Asekova, Sovetgul;Kulkarni, Krishnanand P.;Oh, Ki Won;Lee, Myung-Hee;Oh, Eunyoung;Kim, Jung-In;Yeo, Un-Sang;Pae, Suk-Bok;Ha, Tae Joung;Kim, Sung Up
    • Plant Breeding and Biotechnology
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    • v.6 no.4
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    • pp.321-336
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    • 2018
  • Sesame (Sesamum indicum L.) is an important oilseed crop grown in tropical and subtropical areas. The objective of this study was to investigate the genetic relationships among 129 sesame landraces and cultivars using simple sequence repeat (SSR) markers. Out of 70 SSRs, 23 were found to be informative and produced 157 alleles. The number of alleles per locus ranged from 3 - 14, whereas polymorphic information content ranged from 0.33 - 0.86. A distance-based phylogenetic analysis revealed two major and six minor clusters. The population structure analysis using a Bayesian model-based program in STRUCTURE 2.3.4 divided 129 sesame accessions into three major populations (K = 3). Based on pairwise comparison estimates, Pop1 was observed to be genetically close to Pop2 with $F_{ST}$ value of 0.15, while Pop2 and Pop3 were genetically closest with $F_{ST}$ value of 0.08. Analysis of molecular variance revealed a high percentage of variability among individuals within populations (85.84%) than among the populations (14.16%). Similarly, a high variance was observed among the individuals within the country of origins (90.45%) than between the countries of origins. The grouping of genotypes in clusters was not related to their geographic origin indicating considerable gene flow among sesame genotypes across the selected geographic regions. The SSR markers used in the present study were able to distinguish closely linked sesame genotypes, thereby showing their usefulness in assessing the potentially important source of genetic variation. These markers can be used for future sesame varietal classification, conservation, and other breeding purposes.

Unattended Trends and Retail Locations: Focusing on Unmanned Convenience and Discount Stores in Seoul (점포의 무인화와 소매점 입지: 서울시 무인 편의점과 무인 할인판매점을 대상으로)

  • Park, Sohyun;Lee, Keumsook
    • Journal of the Economic Geographical Society of Korea
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    • v.24 no.4
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    • pp.411-424
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    • 2021
  • The purpose of this study is to analyze the location characteristics of convenience stores, a consumption industry that forms a new retail environment and implements unattended, and reveals the geographic factors that affect its location. For this purpose, we first examine the growth and regional distribution of manned convenience stores and then construct a gamma generalized linear regression model that explains the distribution of the unmanned convenience stores as well as the manned and unmanned combined convenience stores. As the result, it was observed that the unmanned convenience stores and the unmanned discount stores are located close to public transportation facilities and they have relatively little movement of the population but they are distributed in areas with a higher density of young residential population and densely distributed retail stores and restaurants. The effects of demographic factors on the location of the unmanned convenience stores and the unmanned discount stores differed according to the scope and characteristics of their sales items. Our findings provide an empirical basis for subsequent academic research as an initial study that identified geographic factors influencing the selection of opening locations for unmanned stores.