• Title/Summary/Keyword: Genetic Origin

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Development of Freight Transport Route Model by Considering Logistics Center (물류센터 경유를 고려한 화물운송 경로 모형 개발)

  • Jo, Min-Ji;Kim, Hwan-Seong
    • Journal of Navigation and Port Research
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    • v.39 no.1
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    • pp.61-67
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    • 2015
  • Inland transport becomes more and more important in connecting ports with inland. Therefore, studying on cargo flow from ports to regions has been active in progress by many researchers. However current statistical data of freight flow from origin locations to destination locations does not reflect the exact characteristics of freight flow. Also, they also do not reflect the characteristics of multimodal transport system in which cargos go through intermediate locations such as logistics center or inland container depot. In growing up the emergent need of rebuilding statistical data for freight flow from origin locations to destination locations, this paper will propose a freight flow model with logistics center and it will be verified by genetic algorithm through the simulation scenarios.

Polymorphism Analysis of the ND-4 Gene for the Origin Determination of Olive Flounder, Paralichthys olivaceus. (넙치의 원산지 판별을 위한 ND-4유전자의 다양성 분석)

  • 송인선;진덕희;최석정;이석근
    • Journal of Life Science
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    • v.14 no.4
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    • pp.627-635
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    • 2004
  • In order to distinguish the genetic polymorphism among the olive flounder (Paralichthys olivaceus) obtained from East sea of Jumunjin, aquaculture of Tongyoung and Geoje, and East sea of North Korea, the ND-4 and cytochrome b genes of olive flounder were divided into 5 regions. Each region was analyzed by degenerating gel electrophoresis scanning (DGES), and by subsequent DNA sequencing. The DGES disclosed characteristic DNA polymorphisms in ND-4-2 and ND-4-3 regions of olive flounder, which were also confirmed by the DNA sequencing. The olive flounders obtained from the different marine areas showed DNA mutations in ND-4-2 region (G390A, C402T, and A411G; GenBank: AB028664), and also showed frequent DNA mutations in ND-4-3 region (C515G, C537T, C538T, A567G, G714A, C736T, G756A, A759T, T817C, and T829G), white the cytochrome b gene showed no DNA mutation both in the DGES and DNA sequencing. These data suggest that the ND-4-2 and ND-4-3 regions are candidate loci to distinguish the origin of olive flounder, and that the DGES used in this study provided fast and reliable informations for the genetic polymorphism.

Geochemical Comparison Study on the Amphibolite in the Central Gyeonggi massif and Southeastern Okcheon metamorphic belt (중부 경기육괴와 동남부 옥천변성대의 각섬암에 대한 지화학적 비교 연구)

  • Na Ki Chang;Cheong Won Seok
    • The Journal of the Petrological Society of Korea
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    • v.13 no.4
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    • pp.201-213
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    • 2004
  • The Precambrian amphibolites in the central Gyeonggi massif, Yangsuri, Gyeonggido and southeastern Okcheon metamophic belt, Mungyeonggun, Gyeongsangbukdo, Korea, were studied on the geochemical characteristics of major and trace elements, and discussed petrogenetically and geotectonically. The characteristics of major elements of the amphibolites in these study areas are igeous origin such as tholeiitic-, subalkaline and alkaline basalt. Geotectonic distinction diagrams of trace elements such as Ti-Zr-Y and Zr-Nb-Y show basaltic igneous activity of island arc and mid ocean ridge environment at central Gyunggi massif, and within plate environment at southeastern Okcheon metamorphic belt. This result shows that genetic environments of study areas are different. Especially, origin of amphibolites in central Gyeonggi massif is similar with that of western Gyeonggi massif but different with the amphibolites of Chuncheon area. Genetic environment estimated of fractional crystallization of plagioclase has no particular effect on the origin of magma because value of LREE is higher than that of HREE and Eu anomaly definitely don't be exposed.

Genetic Diversity and Spatial Structure of Symplocarpus renifolius on Mt. Cheonma, Korea

  • Jeong, Ji-Hee;Park, Yu-Jin;Kim, Zin-Suh
    • Korean Journal of Plant Resources
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    • v.20 no.6
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    • pp.530-539
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    • 2007
  • Genetic variation and structure of 9 subpopulations of Symplocarpus renifolius Schott ex Tzvelev on Mt. Cheonma, in Korea, were determined via starch-gel electrophoresis. The genetic diversity at 10 loci for 8 isozymes ($P_{99}=66%,\;A=2.26,\;H_o=0.212,\;H_e=0.230$) was found to be considerably higher than that seen in other long-lived perennial plants. On the whole, the genotype frequencies were in accordance with Hardy-Weinberg expectations. Approximately 5%($\theta=0.049$) of the total variability was among subpopulations. The high levels of observed genetic diversity in S. renifolius were attributed to a universal outcrossing system and other specific factors like differences in age classes and widely scattered individuals around the main distribution. Heterozygosity was highest at a mid-range of elevation($450m{\sim}600m$). The lowest heterozygosity at lower elevation was attributed to the possible origin of seeds transported by water from upstream regions during the monsoon season. Spatial structure in a subpopulation evidenced a strong autocorrelation between closer individuals within $3{\sim}4m$ of distance. This was assumed to be attributable to the restricted seed dispersal characteristics of S. renifolius. In accordance with the findings generated in this study, some implications regarding the conservation of S. renifolius at the Mt. Cheonma were also presented.

Detection of Mendelian and Parent-of-origin Quantitative Trait Loci in a Cross between Korean Native Pig and Landrace I. Growth and Body Composition Traits

  • Kim, E.H.;Choi, B.H.;Kim, K.S.;Lee, C.K.;Cho, B.W.;Kim, T.-H.;Kim, J.-J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.5
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    • pp.669-676
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    • 2007
  • This study was conducted to detect quantitative trait loci (QTL) affecting growth and body composition in an $F_2$ reference population of Korean native pig and Landrace crossbreds. The three-generation mapping population was generated with 411 progeny from 38 $F_2$ full-sib families, and 133 genetic markers were used to produce a sex-average map of the 18 autosomes. The data set was analyzed using least squares Mendelian and parent-of-origin interval-mapping models. Lack-of-fit tests between the models were used to characterize QTL for mode of expressions. A total of 8 (39) QTL were detected at the 5% genome (chromosome)-wise level for the 17 analyzed traits. Of the 47 QTL detected, 21 QTL were classified as Mendelian expressed, 13 QTL as paternally expressed, 6 QTL as maternally expressed, and 7 QTL as partially expressed. Of the detected QTL at 5% genome-wise level, two QTL had Mendelian mode of inheritance on SSC6 and SSC9 for backfat thickness and bone weight, respectively, two QTL were maternally expressed for leather weight and front leg weight on SSC6 and SSC12, respectively, one QTL was paternally expressed for birth weight on SSC4, and three QTL were partially expressed for hot carcass weight and rear leg weight on SSC6, and bone weight on SSC13. Many of the Mendelian QTL had a dominant (complete or overdominant) mode of gene action, and only a few of the QTL were primarily additive, which reflects that heterosis for growth is appreciable in a cross between Korean native pig and Landrace. Our results indicate that alternate breed alleles of growth and body composition QTL are segregating between the two breeds, which could be utilized for genetic improvement of growth via marker-assisted selection.

A Genetic Algorithm for Trip Distribution and Traffic Assignment from Traffic Counts in a Stochastic User Equilibrium (사용자 평형을 이루는 통행분포와 통행배정을 위한 유전알고리즘)

  • Sung, Ki-Seok
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 2006.11a
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    • pp.599-617
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    • 2006
  • A network model and a Genetic Algorithm(GA) is proposed to solve the simultaneous estimation of the trip distribution and traffic assignment from traffic counts in the congested networks in a logit-based Stochastic User Equilibrium (SUE). The model is formulated as a problem of minimizing the non-linear objective functions with the linear constraints. In the model, the flow-conservation constraints of the network are utilized to restrict the solution space and to force the link flows meet the traffic counts. The objective of the model is to minimize the discrepancies between the link flows satisfying the constraints of flow-conservation, trip production from origin, trip attraction to destination and traffic counts at observed links and the link flows estimated through the traffic assignment using the path flow estimator in the legit-based SUE. In the proposed GA, a chromosome is defined as a vector representing a set of Origin-Destination Matrix (ODM), link flows and travel-cost coefficient. Each chromosome is evaluated from the corresponding discrepancy, and the population of the chromosome is evolved by the concurrent simplex crossover and random mutation. To maintain the feasibility of solutions, a bounded vector shipment is applied during the crossover and mutation.

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Direct somatic embryogenesis, plant regeneration and genetic transformation of Panax ginseng

  • Park, Yong-Eui;Yang, Deok-Chun;Park, Kwang-Tae;Soh, Woong-Young;Hiroshi Sano
    • Proceedings of the Botanical Society of Korea Conference
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    • 1999.07a
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    • pp.85-89
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    • 1999
  • Somatic embryogendesis is one of good examples of the basic research for plant embryo development as well as an important technique for plant biotechnology. This paper describes the direct somatic embryogenesis from zygotic embryos of Panax ginseng is reversely related to normal axis growth of zygotic embryos by the experiment of various chemical treatments. Under the normal growth condition, the apical tips of embryo axis produced an agar-diffusible substance, which suppressed somatic embryo development from cotyledons. Although the cells of zygotic embryos were released from the restraint of embryo axis, various factors were still involved for somatic embryo development. Electron microscopic observation revealed that the ultrastructure of cells of cotyledon epidermis markedly changed before initiation of embryonic cell division, probably indicating reprogramming events into the cells embryogenically determined state. Polar accumulation of endogenous auxin or cell-cell isolation by plasmolysis pre-treatment is the strong inducer for the somatic embryo development. The cells for the process of somatic embryogenesis might be determined by the physiological conditions fo explants and medium compositions. Direct somatic embryos from cotyledons fo ginseng were originated eithrer from single or multiple cells. The different cellular origin of somatic embryos was originated either from single or multiple cell. The different cellular origin of somatic embryos was depended on various developmental stages of cotyledons. Immature meristematic cotyledons produced multiple cell-derived somatic embryos, which developed into multiple embryos. While fully mature cotyledons produced single cell-derived single embryos with independent state. Plasmolysis pretreatment of cotyledons strongly enhanced single cell-derived somatic embryogenesis. Single embryos were converted into normal plantlets with shoot and roots, while multiple embryos were converted into only multiple shoots. GA3 or a chilling treatment was prerequisite for germination and plant conversion. Low concentration of ammonium ion in medium was necessary for balanced growth of root and shoot of plantlets. Therefore, using above procedures, successful plant regeneration of ginseng was accomplished through direct single embryogenesis, which makes it possible to produce genetically transformed ginseng efficently.

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Genetic Relationships of Panax Species by RAPD and ISSR Analyses

  • In, Dong-Su;Kim, Young-Chang;Bang, Kyong-Hwan;Chung, Jong-Wook;Kim, Ok-Tae;Hyun, Dong-Yoon;Cha, Seon-Woo;Kim, Tae-Soo;Seong, Nak-Sul
    • Korean Journal of Medicinal Crop Science
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    • v.13 no.5
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    • pp.249-253
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    • 2005
  • This study was carried out to develop convenient and reproducible methods for identifying the genetic relationship among germplasms of Panax species based on molecular genetics. Using random amplified polymorphic DNA (RAPD) and inter simple sequence repeat (ISSR) analyses, genetic polymorphism of the Panax species was investigated with following cultivars and accessions, such as Chunpoong, Yunpoong, Kopoong, Sunpoong, and Kumpoong in domestic cultivars, Hwangsuk, Jakyung and Suckju in domestic accessions, and Panax quinquefolius L. and Panax japonicus C.A. Meyer in foreign introduced accessions, respectively. Specific DNA fragments ranging from 200 to 3,000 base pairs in size could be obtained with various ISSR and RAPD primers under the optimized PCR conditions. The dissimilarity coefficients among the genetic polymorphisms of ginseng cultivars and accessions were calculated from 0.26 to 0.90 in RAPD and from 0.12 to 0.89 in ISSR analysis, respectively. Eleven plant samples were grouped siblings together with cultivars and parents based on cluster analysis of genetic distance depending on genetic property such as origin of the species. In results, both RAPD and ISSR analyses were useful for identifying the genetic relationship among cultivars and accessions of Panax species at DNA level.

Notes on genetic variation in Sedum sarmentosum (Crassulaceae): Implications for the origin of southern Korean populations (돌나물(돌나물과)집단의 유전적 변이: 남부지방 집단의 기원에 대한 암시)

  • Chung, Mi Yoon;Lopez-Pujol, Jordi;Chung, Myong Gi
    • Korean Journal of Plant Taxonomy
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    • v.46 no.4
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    • pp.371-377
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    • 2016
  • The succulent herbaceous perennial Sedum sarmentosum commonly grows in the southern part of the Korean Peninsula. It is a species native to China, most likely introduced into Korea due to its edible and medicinal uses. If plants were introduced from a single source, we would expect no or low levels of genetic variation in Korean populations. Alternatively, if plants were introduced from multiple sources, we would expect, in contrast, high levels of genetic diversity. To test which is more likely, we surveyed the degree of allozyme variation in ten populations of this species from southern Korea. We found that S. sarmentosum was monomorphic at all fifteen allozyme loci. However, two congeners (S. polytrichoides and S. kamtschaticum) and two related species (Hylotelephium ussuriense and H. verticillatum) maintain moderate to high levels of genetic diversity ($H_e=0.144$, 0.203, 0.201, and 0.204, respectively). We suggest that southern Korean populations of S. sarmentosum likely descended from a single introduction of a few plants and then became naturalized exclusively via vegetative spreading (as plants in Korea, but also as occurs in other parts of its native and naturalized range, are sterile).

Genetic Diversity and Variation of Chinese Shrimp Fenneropenaeus chinensis Populations as Inferred by AFLP Fingerprinting (대하 Fenneropenaeus chinensis 집단의 AFLP 지문에 의한 유전 다양성 및 변이)

  • Sung, Yong-Gil;Nam, Yoon-Kwon;Han, Hyeon-Seob;Bang, In-Chul
    • Journal of Aquaculture
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    • v.20 no.4
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    • pp.255-259
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    • 2007
  • Genetic diversity among four populations of Chinese shrimp Fenneropenaeus chinensis from Narodo, Yeonggwang, Taean and Chinese Bohai Bay was assessed by amplified fragment length polymorphism (AFLP) DNA fingerprinting. Total numbers of AFLP bands generated (ranging from 251 to 254) and average percent of polymorphic bands (27.1 to 28.1 %) were similar in the four populations. Heterozygosity and genetic diversity within or among the populations were very low for the populations with average values ranging from 0.1177 to 0.1288 and from 0.1099 to 0.1194, respectively. Analyses of pairwise distance, Fst index and genetic similarity among the populations also revealed the similar results with very low genetic differentiation each other. These results suggest that all the wild populations tested in the present analysis may be belonging to the same genetic origin, and also that they may have a close relationship in genetic structure without any significant differentiation.