• Title/Summary/Keyword: Evolutionary pattern

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Bioinformatics Analysis of Hsp20 Sequences in Proteobacteria

  • Heine, Michelle;Chandra, Sathees B.C.
    • Genomics & Informatics
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    • v.7 no.1
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    • pp.26-31
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    • 2009
  • Heat shock proteins are a class of molecular chaperones that can be found in nearly all organisms from Bacteria, Archaea and Eukarya domains. Heat shock proteins experience increased transcription during periods of heat induced osmotic stress and are involved in protein disaggregation and refolding as part of a cell's danger signaling cascade. Heat shock protein, Hsp20 is a small molecular chaperone that is approximately 20kDa in weight and is hypothesized to prevent aggregation and denaturation. Hsp20 can be found in several strains of Proteobacteria, which comprises the largest phyla of the Bacteria domain and also contains several medically significant bacterial strains. Genomic analyses were performed to determine a common evolutionary pattern among Hsp20 sequences in Proteobacteria. It was found that Hsp20 shared a common ancestor within and among the five subclasses of Proteobacteria. This is readily apparent from the amount of sequence similarities within and between Hsp20 protein sequences as well as phylogenetic analysis of sequences from proteobacterial and non-proteobacterial species.

Cultural Heritage Management and Sustainable Development

  • Cheong, Ki Moon
    • Asia-Pacific Journal of Business
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    • v.1 no.1
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    • pp.61-72
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    • 2010
  • A view of cultural heritage as a form of capital considers the long term, dynamic, evolutionary, inter-temporal and inter-generational aspects of cultural heritage. The principles of sustainability provide a basis on the broader issue of culture in economic development. They might be capable of specifying a pattern of development that is "culturally sustainable" in the same way as somewhat similar set of criteria derived for the natural world, the criteria for defining ecologically and environmentally sustainable development. Thus we might accept the principles of material and non-material advancement, intergenerational and intra-generational equity, the maintenance of cultural diversity, the precautionary principle, and the recognition of system interdependence as benchmarks in assessing a cultural development process.

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Motochondrial DNA Polymorphism of the Blue Mussel (Mytilus edulis) Species Complex on the East Coast of Korea (한국 동해안에서 서식하는 진주담치(Mytilus edulis)의 미토콘드리아 DNA 다형현상)

  • Kim, Ik-Soo;Min, byung-Yoon;Yoon, Myung-Hee;Kim, Doh-Hoon
    • Journal of Life Science
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    • v.9 no.3
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    • pp.262-267
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    • 1999
  • Mitochondrial DNA (mtDNA) polymorphism of the blue mussel (Mytilus edulis) species complex sampled from the east coast of Korean was studied using a partial sequence of COIII gene (336 bp). Samples obtained from three localities on the east coast of Korea revealed four haplotypes with two clearly differentiated mitochondrial clades (termed clades B and E), separated by 4.2% of minimum sequence divergence. This pattern indicates no difference between east and south coasts of Korea. According to population genetic theory on evolutionary characteristics of mtDNA, we concluded that mtDNA introgression from M. edulis to M. gallprovincialis might be a source for mtDNA polymorphism found in mussels on the east coast of Korea.

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Differential Evolution with Multi-strategies based Soft Island Model

  • Tan, Xujie;Shin, Seong-Yoon
    • Journal of information and communication convergence engineering
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    • v.17 no.4
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    • pp.261-266
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    • 2019
  • Differential evolution (DE) is an uncomplicated and serviceable developmental algorithm. Nevertheless, its execution depends on strategies and regulating structures. The combination of several strategies between subpopulations helps to stabilize the probing on DE. In this paper, we propose a unique k-mean soft island model DE(KSDE) algorithm which maintains population diversity through soft island model (SIM). A combination of various approaches, called KSDE, intended for migrating the subpopulation information through SIM is developed in this study. First, the population is divided into k subpopulations using the k-means clustering algorithm. Second, the mutation pattern is singled randomly from a strategy pool. Third, the subpopulation information is migrated using SIM. The performance of KSDE was analyzed using 13 benchmark indices and compared with those of high-technology DE variants. The results demonstrate the efficiency and suitability of the KSDE system, and confirm that KSDE is a cost-effective algorithm compared with four other DE algorithms.

An Exploratory Research on the Accumulation of Basic Research Capability in the Newly Developing Countries (신흥공업국의 기초연구능력 축적과정의 특성에 대한 탐색연구 -한국 사례를 중심으로-)

  • Hwang, Hye-Ran
    • Journal of Korea Technology Innovation Society
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    • v.7 no.1
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    • pp.42-63
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    • 2004
  • Recent trend of rapid growth in the basic research activities in East-Asian newly industrialized countries bring about the change in the world knowledge production structure. Particularly, Korea showed the changing patterns not only in the number of publication, but also in the aspect of structural change of basic research activities. The stylized facts of basic research activities in Korea can be summarized in three aspects; first, selective development patterns, second, reverse pattern of evolution, and finally, the rapid growth of basic research activities in major firms. This paper analyse the evolutionary patterns of basic research activities in empirical base and propose the policy implication for supporting basic research activity in newly industrializing countries.

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Identification of an Embryonic Growth Factor IGF-II from the Central Nervous System of the Teleost, Flounder, and Its Expressions in Adult Tissues

  • Kim, Dong-Soo;Kim, Young-Tae
    • Journal of Microbiology and Biotechnology
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    • v.9 no.1
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    • pp.113-118
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    • 1999
  • The insulin-like growth factor (IGF) is found in all vertebrates and its type-II molecule is regarded as a fundamental embryonic growth factor during development. We have firstly identified, in this study, a cDNA clone corresponding to IGF-II (flIGF-II) from the adult brain of the teleost, Paralichthys olivaceus. We also examined the tissue expression of flIGF-II in several adult tissues by RT-PCR. The flIGF-II cDNA contained a complete ORF consisting of 215 amino acids and one stop codon. Its molecular characteristics appear to be similar to the previously identified IGF-II molecules, in which a common primary structure exhibiting B, C, A, D, and E domains is evidently observed. This cDNA clone seems to be cleaved at $Ala_{52}$ for the $NH_2$-end signal peptide and appears to produce a 98 amino acid-long E-peptide from the $Arg^{118}$. The functional B-D domain regions, therefore, include 65 amino acids and is able to encode a 7.4-kDa protein. The most prominent structural difference between IGF-I and IGF-II was that the D domain of IGF-II exhibits a two-codon-deleted pattern compared to the 8 amino acid-containing IGF-I. The insulin family signature in the A domain and six cysteins forming three disulfide bridges between the B and A domains were evolutionary-conserved from teleosts to mammalian IGF-II. Interestingly, the E-peptide region appears to provide a distinct hallmark between teleosts in amino acid composition. The flIGF-II shows 85.1% of sequence identity to salmon and trout, 90.6% to tilapia, and 98.4% to perch in amino acid level. In tissue expressions of IGF-II, it is very likely that flIGF-II has a significant expression in the adult brain. However, liver seems to be the main source for IGF-II production, and relatively low signals were observed in the adult muscle and kidney. Taken together, it would be concluded that the functional region for IGF-II mRNA is highly similar in phylogeny and is evolutionary, conserved as a mediator for the growth of vertebrates.

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Gain of New Exons and Promoters by Lineage-Specific Transposable Elements-Integration and Conservation Event on CHRM3 Gene

  • Huh, Jae-Won;Kim, Young-Hyun;Lee, Sang-Rae;Kim, Hyoungwoo;Kim, Dae-Soo;Kim, Heui-Soo;Kang, Han-Seok;Chang, Kyu-Tae
    • Molecules and Cells
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    • v.28 no.2
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    • pp.111-117
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    • 2009
  • The CHRM3 gene is a member of the muscarinic acetylcholine receptor family that plays important roles in the regulation of fundamental physiological functions. The evolutionary mechanism of exon-acquisition and alternative splicing of the CHRM3 gene in relation to transposable elements (TEs) were analyzed using experimental approaches and in silico analysis. Five different transcript variants (T1, T2, T3, T3-1, and T4) derived from three distinct promoter regions (T1: L1HS, T2, T4: original, T3, T3-1: THE1C) were identified. A placenta (T1) and testis (T3 and T3-1)-dominated expression pattern appeared to be controlled by different TEs (L1HS and THE1C) that were integrated into the common ancestor genome during primate evolution. Remarkably, the T1 transcript was formed by the integration event of the human specific L1HS element. Among the 12 different brain regions, the brain stem, olfactory region, and cerebellum showed decreased expression patterns. Evolutionary analysis of splicing sites and alternative splicing suggested that the exon-acquisition event was determined by a selection and conservation mechanism. Furthermore, continuous integration events of transposable elements could produce lineage specific alternative transcripts by providing novel promoters and splicing sites. Taken together, exon-acquisition and alternative splicing events of CHRM3 genes were shown to have occurred through the continuous integration of transposable elements following conservation.

Technological Change and Organizational Strategy as an Evolutionary Process (진화론적 관점의 기술혁신의 동태성: 정보기술산업과 조직경쟁유형의 진화)

  • Cha, Dae-Kyu
    • Korean Business Review
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    • v.11
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    • pp.15-38
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    • 1998
  • This study explores the evolution of technical innovation over time. It focuses on sectors of the information technology because this industry can be referred to as one of the most dynamic industries of all times. Following evolutionary theorists, we argue that technological change is gradual and that superior firms and technologies are reward by the' selection' environment. In the initial phase of the industry life cycle, technological change is expected to be radical and uncertainty is high. Over time a product or technology is likely to arise which stands out above all other products or technologies. These so-called 'basic designs' serve as sorts of 'technological guideposts' for further developments in the technology. Once a basic design established, technological progress tends to follow consistent paths or trajectories. The cumulative character of technological progress facilitates a rapid expansion of the boundaries of the technology until the natural limits of the technology are approached and technological progress slows down. Following ecological theories, supply-side developments in the industry are described on the basis of five different organizational types. On the basis of this pattern of market and technological evolution we came up with seven basic propositions.

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Taxonomy of Asian Geranium L.(Geraniaceae) based on fruit and seed morphology

  • Park, Seon-Joo;Park, Hong-Duok
    • Journal of Environmental Science International
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    • v.11 no.2
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    • pp.121-130
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    • 2002
  • Compare to investigate the taxonomic utility of infragenera system and interspecific of Asian Geranium, we examined the fruit and seed morphology from 35 taxa. The fruit shape and seed's dispersal way did so that may divide subgenus or some part section to do could reason evolutionary trends. That is, at seed dispersal, the awns of section Geranium of subgenus Geranium, ramains attached at the top of rostrum, though fairy easily broken off, because seed increases awn's elasticity by diffusive way, it is long characteristic seed\`s dispersal distance, and subgenus Robertium observed that seed dispersal distance is short because it is no awn's elasticity by way that seed dispersal is gone as awn drops with rostrum. Also, section Geranium of subgenus Geranium and subgenus Robertium act role that awn keeps temporarily breed swerving with mericarp instead of bristle because section Tuberosa of subgenus Geranium is not bristled function that keep temporarily breed because mericarp bristled on base at seed dispersal do while. Therefore, is thought that is talon that when consider formation's development and function regarding this seed dispersal function, subgenus Geraniuum evolves more than subgenus Robertium. Seed morphology can divide by 2 subgenera(Geranium, Robertium) according to pattern of seed coat. and Seed's morphology characteristic(whole shape, color, form of seed apical and base, micropyle area, hilum area, chalaza, and position of seed hilum area), can distinguish some species, but is thought that is not reasonable as for discernment characteristic form and nature by repetition of characteristic form and nature. Especially, infrasection do in fruit and seed's morphology that is handling in this research that know to argue classification system and relationship by repetition of characteristic form and nature difficult. To all reliable truth, cytological, ecological, embryology, and molecular genetics research about talon is considered that should be achieved section Geranium that do not handle yet.

Advances of Self-incompatibility Genetics in Genus Fagopyrum

  • Woo Sun-Hee;Soo-Jeong Kwon;Sung-Hyun Yun;Min-Young Park;Probir Kumar Mittra;Swapan Kumar Roy;Seong-Woo Cho
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.191-191
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    • 2022
  • Heterostyly continues to fascinate evolutionary biologists interested in heredity, evolution, breeding, and adaptive function. Polymorphism demonstrates how simply inherited developmental changes in the location of plant sexual associations can have important consequences for population pollination and mating biology. In contrast to homozygous self incompatibility, only a small number of mating phenotypes can be maintained in the population because insect pollinators have limitations in achieving multiple segregation sites for pollen deposition. Field studies of pollen tube growth have shown that reciprocal style-stamen polymorphisms function to increase the capacity of insect-mediated cross-pollination. The genetic pattern of style morphs is well established in various taxa, but despite recent advances, the identity, number, and structure of the genes controlling the heteromorphic syndrome have been poorly elucidated. The phenomenon of heterostyly in buckwheat has been controlled by gene complex concentrate to S-locus. Homomorphic autogamous buckwheat strains were established by the interspecific hybridization. Backcrossing of this line to the common buckwheat (pin) and selecting homostylar progenies made it possible to introduce the self-compatible gene into common buckwheat. In the result, we obtained the BC9F2 generation, and defined the strong linkage between flower type and self-incompatibility by microscopic observation of pollen tube growth. This finding suggests that self-incompatibility character is not controlled by one gene. Moreover, we defined the strong linkage between flower type and self-incompatibility. It strongly supports the S supergene theory. Therefore, we have plan to elucidate the heterostyly self-incompatibility by using molecular genetics, proteome analysis and apply to exploitation of buckwheat improvement. In near future, the expression of heterozygous syndromes in genus Fagopyrum with single isolated heterozygous species may provide clues to early stages of polymorphic assembly and shed light on evolutionary models of heterozygous strains.

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