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Improving methods for normalizing biomedical text entities with concepts from an ontology with (almost) no training data at BLAH5 the CONTES

  • Ferre, Arnaud;Ba, Mouhamadou;Bossy, Robert
    • Genomics & Informatics
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    • v.17 no.2
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    • pp.20.1-20.5
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    • 2019
  • Entity normalization, or entity linking in the general domain, is an information extraction task that aims to annotate/bind multiple words/expressions in raw text with semantic references, such as concepts of an ontology. An ontology consists minimally of a formally organized vocabulary or hierarchy of terms, which captures knowledge of a domain. Presently, machine-learning methods, often coupled with distributional representations, achieve good performance. However, these require large training datasets, which are not always available, especially for tasks in specialized domains. CONTES (CONcept-TErm System) is a supervised method that addresses entity normalization with ontology concepts using small training datasets. CONTES has some limitations, such as it does not scale well with very large ontologies, it tends to overgeneralize predictions, and it lacks valid representations for the out-of-vocabulary words. Here, we propose to assess different methods to reduce the dimensionality in the representation of the ontology. We also propose to calibrate parameters in order to make the predictions more accurate, and to address the problem of out-of-vocabulary words, with a specific method.

Comparative analysis of modeling approaches for sulfide-induced corrosion of copper disposal canisters in a 3-dimensional domain

  • Heejae Ju;Nakkyu Chae;Jung-Woo Kim;Hong Jang;Sungyeol Choi
    • Nuclear Engineering and Technology
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    • v.56 no.8
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    • pp.3385-3396
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    • 2024
  • Copper canisters are commonly employed to contain HLW for the long-term, making it crucial to understand how corrosion affects the canister. This study conducted a comparative analysis of two widely used calculation methods for modeling canister corrosion within a 3-D DGR domain. The first method, termed transport-limited corrosion, assumes an immediate sulfide-copper reaction and has been traditionally used due to its conservative nature. The second method, known as the potential-limited corrosion, considers coupled redox reactions at the canister surface and computes corrosion rates through anodic current density. From the results, we found that the edge of the canister geometry and the omission of electrochemical kinetics impose critical limitations with the transport-limited corrosion method. These limitations include the singularity problem, excessive sensitivity to the curvature of the canister's edge, and an inability to evaluate the distribution of corrosion rate over the canister surface as a function of the sulfide concentration. On the other hand, the potential-limited corrosion method avoided the limitations found in the other method. Since the factors relating to these limitations are critical to the design and optimization of the copper disposal canister, careful consideration when selecting appropriate calculation methods for corrosion will be required.

A Study on the Long-Run Equilibrium Between KOSPI 200 Index Spot Market and Futures Market (분수공적분을 이용한 KOSPI200지수의 현.선물 장기균형관계검정)

  • Kim, Tae-Hyuk;Lim, Soon-Young;Park, Kap-Je
    • The Korean Journal of Financial Management
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    • v.25 no.3
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    • pp.111-130
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    • 2008
  • This paper compares long term equilibrium relation of KOSPI 200 which is underling stock and its futures by using general method fractional cointegration instead of existing integer cointegration. Existence of integer cointegration between two price time series gives much wider information about long term equilibrium relation. These details grasp long term equilibrium relation of two price time series as well as reverting velocity to equilibrium by observing difference coefficient of error term when it renounces from equilibrium relation. The result of this study reveals existence of long term equilibrium relation between KOSPI200 and futures which follow fractional cointegration. Difference coefficient, d, of 'two price time series error term' satisfies 0 < d < 1/2 beside bandwidth parameter, m(173). It means two price time series follow stationary long memory process. This also means impulse effects to balance price of two price time series decrease gently within hyperbolic rate decay. It indicates reverting speed of error term is very low when it bolts from equilibrium. It implies to market maker, who is willing to make excess return with arbitrage trading and hedging risk using underling stock, how invest strategy should be changed. It also insinuates that information transition between KOSPI 200 Index market and futures market does not working efficiently.

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Development and Validation of the Classification of Home-based Long-term Care Activities (노인장기요양보험 재가서비스 분류 틀 개발 및 타당도 검증)

  • Song, MI Sook;Song, Hyun Jong
    • 한국노년학
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    • v.34 no.2
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    • pp.369-386
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    • 2014
  • The purpose of this study was to develop the classification of home-based long-term care activities and to test its validity. In this study, the taxonomy of long-term care activities was structured according to the service domain and process. Two expert groups participated in making a draft of the taxonomy that was composed of 7 service domains, 22 care needs, 22 service objectives, and 114 activities. Reliability and validity of the taxonomy was tested in a sample of 152 elderly subjects who used the home-based long-term care services. Based on the factor analysis of 114 activities, 21 factors were extracted from 114 activities. Internal consistency of the factors was high. Content validity was confirmed by the CVI. Long-term care insurance grade was used to assess the criterion validity. Among 21 care needs, 12 cares needs were significantly different from their grade. The classification of home-based long-term care activities demonstrated reliability and validity. In conclusion, the use of this classification is recommended while communicating with the elderly subjects, service providers, and the 3rd party payers.

Inter-Domain Mobility Management Based on the Proxy Mobile IP in Mobile Networks

  • Gohar, Moneeb;Koh, Seok-Joo
    • Journal of Information Processing Systems
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    • v.12 no.2
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    • pp.196-213
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    • 2016
  • System Architecture Evolution (SAE) with Long Term Evolution (LTE) has been used as the key technology for the next generation mobile networks. To support mobility in the LTE/SAE-based mobile networks, the Proxy Mobile IPv6 (PMIP), in which the Mobile Access Gateway (MAG) of the PMIP is deployed at the Serving Gateway (S-GW) of LTE/SAE and the Local Mobility Anchor (LMA) of PMIP is employed at the PDN Gateway (P-GW) of LTE/SAE, is being considered. In the meantime, the Host Identity Protocol (HIP) and the Locator Identifier Separation Protocol (LISP) have recently been proposed with the identifier-locator separation principle, and they can be used for mobility management over the global-scale networks. In this paper, we discuss how to provide the inter-domain mobility management over PMIP-based LTE/SAE networks by investigating three possible scenarios: mobile IP with PMIP (denoted by MIP-PMIP-LTE/SAE), HIP with PMIP (denoted by HIP-PMIP-LTE/SAE), and LISP with PMIP (denoted by LISP-PMIP-LTE/SAE). For performance analysis of the candidate inter-domain mobility management schemes, we analyzed the traffic overhead at a central agent and the total transmission delay required for control and data packet delivery. From the numerical results, we can see that HIP-PMIP-LTE/SAE and LISP-PMIP-LTE/SAE are preferred to MIP-PMIP-LTE/SAE in terms of traffic overhead; whereas, LISP-PMIP-LTE/SAE is preferred to HIP-PMIP-LTE/SAE and MIP-PMIP-LTE/SAE in the viewpoint of total transmission delay.

Application of a New NDI Method using Magneto-Optical Film for Inspection of Micro-Cracks (미소균열 탐상을 위한 자기광학소자를 이용한 비파괴탐상법의 제안과 적용)

  • Lee, Hyoung-No;Park, Han-Ju;Shoji, Tetsuo
    • Journal of the Korean Society for Nondestructive Testing
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    • v.21 no.2
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    • pp.197-203
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    • 2001
  • Micro-defects induced by design and production failure or working environments are known as the cause of SCC(Stress Corrosion Cracking) in aged structures. Therefore, the evaluation of structural integrity based on micro-cracks is required not only a manufacturing step but also in-service term. So we introduce a new nondestructive inspection method using the magneto-optical film to detect micro-cracks. The method has some advantage such as high testing speed, real time data acquistion and the possibility of remote sensing by using of a magneto-optical film that takes advantage of the change of magnetic domains and domain walls. This paper introduces the concept of the new nondestructive inspection method using the magneto-optical film, also proves the possibility of this method as a remote testing system under oscillating load considering application on real fields by applying the method to four types of specimens.

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An Analysis of Analogies in the Chemistry Domain of Middle School Science Textbooks Developed under the 2007 Revised National Curriculum (2007 개정 중학교 과학 교과서의 화학 영역에 사용된 비유의 분석)

  • Noh, Taehee;Ahn, Inyoung;Kang, Sukjin
    • Journal of the Korean Chemical Society
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    • v.57 no.3
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    • pp.398-404
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    • 2013
  • In this study, the analogies in the chemistry domain of middle school science textbooks developed under the 2007 revised National Curriculum were analyzed. A total of 235 analogies were found in 27 middle school science textbooks analysed, which means that one analogy per 10 pages was used on average. The number of analogies found in each textbook considerably varied depending on both publishing company and chemistry domain. Functional analogies, verbal and pictorial analogies, analogies with abstract target and concrete analog, enriched analogies, everyday contexts analogies, student-centered analogies, and analogies with low systematicity were frequently used. On presenting the analogies in the textbooks, the term analogy and description about the limitations of the analogies were rarely mentioned. In comparison with the analogies in the science textbooks developed under the 7th National Curriculum, the frequency of analogies per page was increased. There were positive changes in the aspects of representation, extent of mapping and artificiality. No differences, however, were found in the patterns of the other aspects.

A Parametric Study on EOM-based 2D Numerical Wave Generation using OpenFOAM (OpenFOAM을 이용한 EOM 기반 2차원 수치 파 생성에 관한 파라메트릭 연구)

  • Moon, Seong-Ho;Lee, Sungwook;Paik, Kwang-Jun;Kwon, Chang-Seop
    • Journal of the Society of Naval Architects of Korea
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    • v.55 no.6
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    • pp.490-496
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    • 2018
  • The consistency of the initially designed waves in the domain is essential for accurate calculation of the added resistance in waves through CFD. In particular, unwanted reflected waves at domain boundaries can cause incorrect numerical solutions due to the superposition with initially designed waves. Euler Overlay Method(EOM) is one of the methods for reducing wave reflections by adding an additional source term to momentum and phase conservation equations, respectively. In this study, we apply the Euler Overlay Method(EOM) to the open-source CFD library, OpenFOAM(R), to simulate the accurate free-surface waves in the domain and the parametric study is performed for efficient implementation of Euler Overlay Method(EOM). Considering that the damping efficiency depends on the selection of the overlay parameter in the added source terms, the size of overlay zone and the wave steepness, the influences of these factors are tested through the wave elevation measured at constant time intervals in the 2D numerical wave tank. Through this process, guidelines for selection of optimal overlay parameter and overlay zone size that can be applied according to the scaling law are finally presented.

Evaluation of Short and Long-Term Modal Parameters of a Cable-Stayed Bridge Based on Operational Modal Analysis (운용모드해석에 기반한 사장교의 장단기 동특성 평가)

  • Park, Jong-Chil
    • Journal of the Korea institute for structural maintenance and inspection
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    • v.26 no.4
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    • pp.20-29
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    • 2022
  • The operational modal analysis (OMA) technique, which extracts the modal parameters of a structural system using ambient vibrations, has been actively developed as a field of structural health monitoring of cable-supported bridges. In this paper, the short and long-term modal parameters of a cable-stayed bridge were evaluated using the acceleration data obtained from the two ambient vibration tests (AVTs) and three years of continuous measurements. A total of 27 vertical modes and 1 lateral mode in the range 0.1 ~ 2.5 Hz were extracted from the high-resolution AVTs which were conducted in the 6th and 19th years after its completion. Existing OMA methods such as Peak-Picking (PP), Eigensystem Realization Algorithm with Data Correlation (ERADC), Frequency Domain Decomposition (FDD) and Time Domain Decomposition (TDD) were applied for modal parameters extraction, and it was confirmed that there was no significant difference between the applied methods. From the correlation analysis between long-term natural frequencies and environmental factors, it was confirmed that temperature change is the dominant factor influencing natural frequency fluctuations. It was revealed that the decreased natural frequencies of the bridge were not due to changes in structural performance and integrity, but to the environmental effects caused by the temperature difference between the two AVTs. In addition, when the TDD technique is applied, the accuracy of extracted mode shapes is improved by adding a proposed algorithm that normalizes the sequence so that the autocorrelations at zero lag equal 1.

Development of Inverse Solver based on TSVD in Electrical Impedance Tomography (전기 임피던스 단층촬영법에서 TSVD 기반의 역문제 해법의 개발)

  • Kim, Bong Seok;Kim, Chang Il;Kim, Kyung Youn
    • Journal of the Institute of Electronics and Information Engineers
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    • v.54 no.4
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    • pp.91-98
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    • 2017
  • Electrical impedance tomography is a nondestructive imaging technique to reconstruct unknown conductivity distribution based on applied current data and measured voltage data through an array of electrodes attached on the periphery of a domain. In this paper, an inverse method based on truncated singular value decomposition is proposed to solve the inverse problem with the generalized Tikhonov regularization and to reconstruct the conductivity distribution. In order to reduce the inverse computational time, truncated singular value decomposition is applied to the inverse term after the generalized regularization matrix is taken out from the inverse matrix term. Numerical experiments and phantom experiments have been performed to verify the performance of the proposed method.