• BMB Reports
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• 제42권9호
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• pp.611-616
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• 2009

We investigated the expression pattern of dehydration responsive element-binding protein-3 in tomato under different abiotic stresses. Full length LeDREB3 cDNA was isolated from tomato plant, followed by phylogenetic analysis based on deduced amino acid sequences that revealed significant sequence similarity to DREB proteins belonging to diverse families of plant species. Southern blot analysis showed duplicate copies of LeDREB3 in the tomato genome while organ-specific expression profiling indicated constitutive expression of LeDREB3 in all tested organs, which was particularly strong in flower. LeDREB3 expression was significantly induced by Nacl, drought, low temperature and $H_2O_2$. Moreover, LeDREB3 was slightly regulated by treatment with ABA and MV. These observations suggest that the LeDREB3 gene may be involved in the response of the tomato plant to stress.

• Molecules and Cells
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• 제28권4호
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• pp.383-388
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• 2009

The dehydration responsive element binding protein 2C (DREB2C) is a dehydration responsive element/C-repeat (DRE/CRT)-motif binding transcription factor that induced by mild heat stress. Previous experiments established that overexpression of DREB2C cDNA driven by the cauliflower mosaic virus 35S promoter (35S:DREB2C) resulted in increased heat tolerance in Arabidopsis. We first analyzed the proteomic profiles in wild-type and 35S:DREB2C plants at a normal temperature ($22^{\circ}C$), but could not detect any differences between the proteomes of wild-type and 35S: DREB2C plants. The transcript level of DREB2C in 35S: DREB2C plants after treatment with mild heat stress was increased more than two times compared with expression in 35S:DREB2C plants under unstressed condition. A proteomic approach was used to decipher the molecular mechanisms underlying thermotolerance in 35S:DREB2C Arabidopsis plants. Eleven protein spots were identified as being differentially regulated in 35S:DREB2C plants. Moreover, in silico motif analysis showed that peptidyl-prolyl isomerase ROC4, glutathione transferase 8, pyridoxal biosynthesis protein PDX1, and elongation factor Tu contained one or more DRE/CRT motifs. To our knowledge, this study is the first to identify possible targets of DREB2C transcription factors at the protein level. The proteomic results were in agreement with transcriptional data.

• Journal of Plant Biotechnology
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• 제46권2호
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• pp.97-105
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• 2019

Dehydration Responsive Element Binding (DREB) gene is one of the essential transcription factors plants use for responding to stress conditions including salinity, drought, and cold stress. The purpose of this study was to isolate the full length and characterize the DREB gene from three different genotypes of sugarcane, wild, commercial cultivar, and interspecific hybrid sugarcane. The length of the gene, designated ScDREB was 789 bp, and coding for a putative polypeptide of 262 amino acid residues. Sequences of the gene were submitted to the GenBank database with accession numbers of KX280722.1, KX280721.1, and KX280719.1 for wild sugarcane, commercial cultivar (KPS94-13), and interspecific hybrid (Biotec2), respectively. In silico characterization indicated that the deduced polypeptide contains a putative nuclear localization signal (NLS) sequence, and a conserved AP2/ERF domain of the DREB family, at 82-140 amino residues. Based on multiple sequence alignment, sequences of the gene from the three sugarcane genotypes were classified in the DREB2 group. Gene expression analysis indicated, that ScDREB2 expression pattern in tested sugarcane was up-regulated by salt stress. When the plants were under 100 mM NaCl stress, relative expressions of the gene in leaves was higher than those in roots. In contrast, under 200 mM NaCl stress, relative expressions of the gene in roots was higher than those in leaves. This is the first report on cloning the full length and characterization, of ScDREB2 gene of sugarcane. Results indicate that ScDREB2 is highly responsive to salt stress.

• Plant Breeding and Biotechnology
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• 제5권2호
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• pp.123-133
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• 2017

AP2/EREBP gene family consists of transcription factor genes with a conserved AP2 DNA-binding domain and is involved in various biological processes. AP2/EREBP gene families were identified through genome-wide searches in five Cucurbitaceae species including cucumber, wild cucumber, melon, watermelon, and bitter gourd, which consisted of more than 100 genes in each of the five species. The gene families were further divided into five groups including four subfamilies (ERF, DREB, AP2 and RAV) and a soloist group. Among the subfamilies, DREB subfamily which is known to be related to abiotic stress response was more analyzed and a total of 25 genes were identified as Cucurbitaceae homologues of Arabidopsis CBF/DREB1 genes which are important for abiotic stress-response and tolerance. In silico expression profiling using RNA-Seq data revealed diverse expression patterns of cucumber AP2/EREBP genes. AP2/EREBP gene families identified in this study will be valuable for understanding the stress response mechanism as well as facilitating molecular breeding in Cucurbitaceae crops.

• Molecules and Cells
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• 제19권2호
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• pp.212-218
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• 2005

A full-length 1.1 kb cDNA, designated Oryza sativa Dehydrin 1 (OsDhn1), was isolated from the seed coat of rice. The deduced protein is hydrophilic and has three K-type and one S-type motifs (SK3-type), indicating that OsDhn1 belongs to the acidic dehydrin family, which includes wheat WCOR410 and Arabidopsis COR47. Expression of OsDhn1 was strongly induced by low temperature as well as by drought. Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma. OsDhn1 was also up-regulated in UBI::CBF1/DREB1b transgenic plants indicating that it is regulated by the CBF/DREB stress signaling pathway.

• Journal of Applied Biological Chemistry
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• 제64권1호
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• pp.39-48
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• 2021

가뭄은 작물의 성장과 생산성을 방해하는 비 생물학적 스트레스 중 하나다. 비 생물학적 스트레스에 대응하기 위해서는 식물이 불리한 환경 조건에서 스트레스에 나타내는 분자 조절 네트워크를 이해해야 한다. 비 생물학적 스트레스 (가뭄에 대응)에 대처할 수 있는 조합을 선별하기 위한 실험에서 스트레스 조건에서만 발현되는 5개의 가뭄 스트레스 유도성 프로모터를 선별하였으며, 이 중 36개의 cis-regulatory element를 선별하였다. 그 결과 가뭄 스트레스에서만 발현되는 유전자의 프로모터에서 cis-regulatory element를 새롭게 조합하여 미세 제어 조절을 할 수 있는 2 개의 합성프로모터(BL1, BL2)를 제작하였다. 합성프로모터를 포함한 형질전환식물(BL1-GUS, BL2-GUS)의 분석은 합성프로모터가 건조 조건에서 형질전환식물 내의 GUS 유전자의 발현을 증가시키는 것을 통하여 확인하였다. 또한 Transient activation assay를 통해 DREB1A와 DREB2C에 의해 합성프로모터가 활성화되는 것도 확인하였다. 이러한 결과는 가뭄 특이적인 cis-regulatory element의 조합에 의해 제작한 합성프로모터가 다양한 비 생물학적 스트레스에 반응하고, 식물의 성장 지연을 유발하지 않고 스트레스에 효과적으로 대응할 수 있을 것이라 예상할 수 있다.

• 생명과학회지
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• 제28권3호
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• pp.376-387
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• 2018

식물이 접하는 다양한 환경 스트레스(고온, 저온, 냉해, 고염, 가뭄 등) 중에서 물부족(가뭄) 스트레스는 식물의 생장 및 생산성을 저해하는 가장 주요한 요인으로 보고되어 왔다. 그러므로, 물부족 스트레스에 대한 식물의 반응 기작을 명확히 이해하는 것은 물부족 스트레스 저항성이 증가된 유용 작물 개발에 적용될 수 있을 것으로 기대되며, 그 결과 작물 재배 가능 지역의 확대에 기여할 수 있을 것으로 생각된다. 식물의 물부족 스트레스 신호 과정은 크게 식물 호르몬인 앱시스산 의존적인 과정과 비의존적인 과정으로 분류되며, 각각 AREB/ABF, DREB2 전사 조절 인자가 주요한 전사 조절 인자로 참여하여 하위 단계 반응 유전자의 발현 조절에 참여한다. 이러한 AREB/ABF, DREB2 의존적인 regulon에 대한 연구를 통해 물부족 스트레스 신호 과정 중 전사 수준의 조절에 대한 규명이 활발히 이루어지고 있다. 해당 신호 과정에는 전사 수준의 조절뿐만 아니라 인산화, 유비퀴틴화와 같은 번역 후 변형 과정 및 염색질 변형에 의해 매개되는 후성유전학적 조절도 연관되어 있다. 본 총설에서는 현재까지 보고된 물부족 스트레스 신호 전달 과정을, 이와 관련되어 보고된 다양한 신호 전달 단백질들의 기능과 연계시켜 알아보고자 한다. 이러한 물부족 스트레스 신호 전달 과정에 대한 명확한 이해는 향후 유용 내건성 작물 개발을 위한 이론적 기반 구축에 도움이 될 수 있을 것이라 생각된다.

• BMB Reports
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• 제38권4호
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• pp.440-446
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• 2005

A cDNA that was rapidly induced upon abscisic acid, cold, drought, mechanical wounding and to a lesser extent, by high salinity treatment, was isolated from Arabidopsis seedlings. It was classified as DREB subfamily member based on multiple sequence alignment and phylogenetic characterization. Since it encoded a protein with a typical ERF/AP2 DNA-binding domain and was closely related to the TINY gene, we named it TINY2. Gel retardation assay revealed that TINY2 was able to form a specific complex with the previously characterized DRE element while showed only residual affinity to the GCC box. When fused to the GAL4 DNA-binding domain, either full-length or its C-terminus functioned effectively as a trans-activator in the yeast one-hybrid assay while its N-terminus was completely inactive. Our data indicate that TINY2 could be a new member of the AP2/EREBP transcription factor family involved in activation of down-stream genes in response to environmental stress.

• 한국작물학회지
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• 제64권4호
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• pp.384-394
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• 2019

국내에서 육성된 파성3으로 분류된 밀의 생장에 대한 고온의 영향을 알아보기 위해 분얼기부터 등숙기까지 일평균 17℃, 20℃, 23℃, 26℃ 온도 처리에 의해 나타나는 밀의 생육 특성과 유전자 발현양의 변이를 분석하였다. 1. 밀의 생산성과 밀접한 연관이 있는 유효분얼수, 건물중은 수안밀과 조은밀은 일평균 온도 23℃ 이상에서 감소하였고, 진품밀은 20℃ 이상에서 감소하였다. 2. 진품밀의 경우 온도 처리 50일 후 온도 조건에 따라 생육상이 뚜렷이 구분되었는데, 17℃에서 영양생장 단계를 보였고, 20℃ 이상에서 출수·개화 단계를 나타냈다. 3. 온도와 관련된 생리대사에 관여한다고 알려진 유전자 16개를 대상으로 RT-qPCR을 진행하여 온도 처리 50일 후 진품밀의 17℃와 23℃ 처리구에서 유전자 발현 수준의 차이를 확인해본 결과, 23℃ 처리구에서 발현이 증가한 유전자에는 HSP70, HSP101, VRN2, ERF1, TAA1, YUCCA2, GolS, MYB73, Histone H2A이 있고, 감소한 유전자에는 VRN-A1, DREB2A, HsfA3, PIF4, PhyB, HSP17.6CII, rbcL이 있다. 4. 16개 유전자 중 MYB73, YUCCA2, HSP101, ERF1, VRNA1이 저온과 고온 조건 사이에서 유전자 발현양에 큰 차이를 보였다. 5. 온도에 의한 진품밀의 출수 표현형은 평균온도 17℃와 20℃ 사이에서 결정적으로 나타나는 것으로 보이며, 온도에 의한 생육상과 형태적 특성의 차이는 단일 유전자 발현이 아닌 고온 스트레스 반응과 관련된 여러 유전자의 복합적인 메커니즘에 의해 영향을 받을 것으로 생각된다.

• Molecules and Cells
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• 제37권2호
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• pp.109-117
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• 2014

Microbiota in the niches of the rhizosphere zones can affect plant growth and responses to environmental stress conditions via mutualistic interactions with host plants. Specifically, some beneficial bacteria, collectively referred to as Plant Growth Promoting Rhizobacteria (PGPRs), increase plant biomass and innate immunity potential. Here, we report that Enterobacter sp. EJ01, a bacterium isolated from sea china pink (Dianthus japonicus thunb) in reclaimed land of Gyehwa-do in Korea, improved the vegetative growth and alleviated salt stress in tomato and Arabidopsis. EJ01 was capable of producing 1-aminocy-clopropane-1-carboxylate (ACC) deaminase and also exhibited indole-3-acetic acid (IAA) production. The isolate EJ01 conferred increases in fresh weight, dry weight, and plant height of tomato and Arabidopsis under both normal and high salinity conditions. At the molecular level, short-term treatment with EJ01 increased the expression of salt stress responsive genes such as DREB2b, RD29A, RD29B, and RAB18 in Arabidopsis. The expression of proline biosynthetic genes (i.e. P5CS1 and P5CS2) and of genes related to priming processes (i.e. MPK3 and MPK6) were also up-regulated. In addition, reactive oxygen species scavenging activities were enhanced in tomatoes treated with EJ01 in stressed conditions. GFP-tagged EJ01 displayed colonization in the rhizosphere and endosphere in the roots of Arabidopsis. In conclusion, the newly isolated Enterobacter sp. EJ01 is a likely PGPR and alleviates salt stress in host plants through multiple mechanisms, including the rapid up-regulation of conserved plant salt stress responsive signaling pathways.