• 제목/요약/키워드: Correlation clustering

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가침박달의 열매, 종자 및 발아특성 변이 (The Variation of Fruit, Seed and Germination Characteristics of Exochorda serratifolia)

  • 송정호;임효인
    • 한국산림과학회지
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    • 제101권4호
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    • pp.619-625
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    • 2012
  • 본 연구는 국내 분포하는 가침박달 집단의 열매, 종자 및 발아 특성에 대한 변이를 조사하였다. 5개 자연집단의 96개 개체목에서 열매를 채취하여 5가지 열매특성, 7가지 종자특성 및 3가지 발아특성을 분석하였다. 평균발아 일수를 제외한 14가지 특성들에서 집단간 및 집단내 개체간에 유의적인 차이가 인정되었다. 열매와 종자 특성은 대체적으로 전체 분산 가운데 집단이 차지하는 비율이 높은 것으로 나타났다. 변이계수 값을 보면 열매특성은 열매무게 27.0%, 종자특성은 종자길이/두께 28.1%, 발아특성은 발아속도 52.5%로 가장 높은 값을 나타냈다. 가침박달 집단의 평균 발아특성은 발아율 62.9%, 평균발아일수 64.0일, 발아속도 0.40개/일로 나타났다. 상관분석결과 평균발아일수는 종자두께와 발아속도는 모수의 수고 및 위도와 각각 정의 상관관계를 나타냈다. 또한 위도가 높을수록 열매가 무겁게 나타나는 정의 상관관계를 나타냈다. 군집분석결과 집단의 분포에 따른 지리적인 경향은 나타나지 않았다. 주성분분석 결과 제1주성분의 기여도가 전체변이의 63%를 설명하였으며, 고유값(Eigenvalue)이 1 이상인 제3주성분까지의 기여도는 97%로 가침박달 열매, 종자 및 발아특성 분류에 중요한 정보를 주는 요인으로 나타났다.

Linking growth performance and carcass traits with enterotypes in Muscovy ducks

  • Qian Fan;Yini Xu;Yingping Xiao;Caimei Yang;Wentao Lyu;Hua Yang
    • Animal Bioscience
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    • 제37권7호
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    • pp.1213-1224
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    • 2024
  • Objective: Enterotypes (ETs) are the clustering of gut microbial community structures, which could serve as indicators of growth performance and carcass traits. However, ETs have been sparsely investigated in waterfowl. The objective of this study was to identify the ileal ETs and explore the correlation of the ETs with growth performance and carcass traits in Muscovy ducks. Methods: A total of 200 Muscovy ducks were randomly selected from a population of 5,000 ducks at 70-day old, weighed and slaughtered. The growth performance and carcass traits, including body weight, dressed weight and evidenced weight, dressed percentage, percentage of apparent yield, breast muscle weight, leg muscle weight, percentage of leg muscle and percentage of breast muscle, were determined. The contents of ileum were collected for the isolation of DNA and 16S rRNA gene sequencing. The ETs were identified based on the 16S rRNA gene sequencing data and the correlation of the ETs with growth performance and carcass traits was performed by Spearman correlation analysis. Results: Three ETs (ET1, ET2, and ET3) were observed in the ileal microbiota of Muscovy ducks with significant differences in number of features and α-diversity among these ETs (p<0.05). Streptococcus, Candida Arthritis, and Bacteroidetes were the presentative genus in ET1 to ET3, respectively. Correlation analysis revealed that Lactococcus and Bradyrhizobium were significantly correlated with percentage of eviscerated yield and leg muscle weight (p<0.05) while ETs were found to have a close association with percentage of eviscerated yield, leg muscle weight, and percentage of leg muscle in Muscovy ducks. However, the growth performance of ducks with different ETs did not show significant difference (p>0.05). Lactococcus were found to be significantly correlated with leg muscle weight, dressed weight, and percentage of eviscerated yield. Conclusion: Our findings revealed a substantial variation in carcass traits associated with ETs in Muscovy ducks. It is implied that ETs might have the potential to serve as a valuable biomarker for assessing duck carcass traits. It would provide novel insights into the interaction of gut microbiota with growth performance and carcass traits of ducks.

여중생의 월경태도와 어머니 양육태도 (Menstrual Attitudes and Maternal Child Rearing Attitudes in Middle School Female Students)

  • 홍경자;김혜원;안혜영
    • 대한간호학회지
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    • 제38권5호
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    • pp.748-757
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    • 2008
  • Purpose: This correlational study was performed to identify the impacts of maternal child rearing attitudes on the menstrual attitudes and the determinants of positive menstrual attitudes in female middle school students. Methods: With convenience sampling, 198 middle school female students were recruited living in one major city and its surrounding areas in Korea. Data was collected using a self administered questionnaire including menstrual attitudes and maternal child rearing attitudes from April 1 to July 15, 2008. Results: Among the Maternal child rearing attitudes, affectionate, achievement oriented and rational attitudes had positive correlations to a positive menstrual attitude, and an autonomous attitude had a negative correlation to a negative menstrual attitude. As determinants of positive menstrual attitudes, feeling of menarche, mother's response at first menstruation, and rational maternal child rearing attitudes were delineated and their explained variance for a positive menstrual attitude was 18.5%. There was no difference on menstrual attitudes by K clustering in terms of maternal child rearing attitudes. Conclusion: These results support the critical role of the mother. Especially desirable maternal child rearing attitudes in relation to a positive menstrual attitude would be affectionate, achievement oriented and rational for early adolescent girls. In further studies, considerations are needed for menstruation related education and research for early adolescents and active involvement of the mother & daughter together.

Damage analysis of carbon nanofiber modified flax fiber composite by acoustic emission

  • Li, Dongsheng;Shao, Junbo;Ou, Jinping;Wang, Yanlei
    • Smart Structures and Systems
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    • 제19권2호
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    • pp.127-136
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    • 2017
  • Fiber reinforced polymer (FRP) has received widespread attention in the field of civil engineering because of its superior durability and corrosion resistance. This article presents the damage mechanisms of a novelty composite called carbon nanofiber modified flax fiber polymer (CNF-modified FFRP). The ability of acoustic emission (AE) to detect damage evolution for different configurations of specimens under uniaxial tension was examined, and some useful AE characteristic parameters were obtained. Test results shows that the mechanical properties of modified composites are associated with the CNF content and the evenness of CNF dispersed in the epoxy matrix. Various damage mechanisms was established by means of scanning electron microscope images. The fuzzy c-means clustering were proposed to classify AE events into groups representing different generation mechanisms. The classifiers are constructed using the traditional AE features -- six parameters from each burst. Amplitude and peak-frequency were selected as the best cluster-definition features from these AE parameters. After comprehensive comparison, a correlation between these AE events classes and the damage mechanisms observed was proposed.

Genetic Diversity of Barley Cultivars as Revealed by SSR Masker

  • Kim, Hong-Sik;Park, Kwang-Geun;Baek, Seong-Bum;Suh, Sae-Jung;Nam, Jung-Hyun
    • 한국작물학회지
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    • 제47권5호
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    • pp.379-383
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    • 2002
  • Allelic diversity of 44 microsatellite marker loci originated from the coding regions of specific genes or the non-coding regions of barley genome was analyzed for 19 barley genotypes. Multi-allelic variation was observed at the most of marker loci except for HVM13, HVM15, HVM22, and HVM64. The number of different alleles ranged from 2 to 12 with a mean of 4.0 alleles per micro-satellite. Twenty-one alleles derived from 10 marker loci are specific for certain genotypes. The level of polymorphism (Polymorphic Information Content, PIC) based on the band pattern frequencies among genotypes was relatively high at the several loci such as HVM3, HVM5, HVM14, HVM36, HVM62 and HVM67. In the cluster analysis using genetic similarity matrix calculated from microsatellite-derived DNA profiles, two major groups were classified and the spike-row type was a major factor for clustering. Correlation between genetic similarity matrices based on microsatellite markers and pedigree data was highly significant ($r=0.57^{**}$), but these two parameters were moderately associated each other. On the other hand, RAPD-based genetic similarity matrix was more highly associated with microsatellite-based genetic similarity ($r=0.63^{**}$) than coefficient of parentage.

군집분석법과 분산주성분분석법을 이용한 대기분진시료의 분류 (Classification of Ambient Particulate Samples Using Cluster Analysis and Disjoint Principal Component Analysis)

  • 유상준;김동술
    • 한국대기환경학회지
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    • 제13권1호
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    • pp.51-63
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    • 1997
  • Total suspended particulate matters in the ambient air were analyzed for eight chemical elements (Ca, Co, Cu, Fe, Mn, Pb, Si, and Zn) using an x-ray fluorescence spectrometry (XRF) at the Kyung Hee University - Suwon Campus during 1989 to 1994. To use these data as basis for source identification study, membership of each sample was selected to represent one of the well defined sample groups. The data sets consisting of 83 objects and 8 variables were initially separated into two groups, fine (d$_{p}$<3.3 ${\mu}{\textrm}{m}$) and coarse particle groups (d$_{p}$>3.3 ${\mu}{\textrm}{m}$). A hierarchical clustering method was examined to obtain possible member of homogeneous sample classes for each of the two groups by transforming raw data and by applying various distances. A disjoint principal component analysis was then used to define homogeneous sample classes after deleting outliers. Each of five homogeneous sample classes was determined for the fine and the coarse particle group, respectively. The data were properly classified via an application of logarithmic transformation and Euclidean distance concept. After determining homogeneous classes, correlation coefficients among eight chemical variables within all the homogeneous classes for calculated and meteorological variables (temperature. relative humidity, wind speed, wind direction, and precipitation) were examined as well to intensively interpret environmental factors influencing the characteristics of each class for each group. According to our analysis, we found that each class had its own distinct seasonal pattern that was affected most sensitively by wind direction.ion.

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퍼지클러스터링 기반 의료 영상 워터마킹 (Fuzzy Clustering Based Medical Image Watermarking)

  • ;김종면
    • 정보처리학회논문지:소프트웨어 및 데이터공학
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    • 제2권7호
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    • pp.487-494
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    • 2013
  • 의료 영상 워터마킹은 헬스케어 정보 시스템의 보안 서비스 분야에서 많은 주목을 받고 있다. 본 논문은 워터마킹을 삽입할 최적의 서버 블록 위치 선택을 위한 개선된 퍼지 클러스터링 기법, 이산 웨이블릿 변환 및 이산 코사인 변환을 분할된 회백질 의료 영상에 적용한 블라인드 의료 영상 워터마킹 기법을 제안한다. 모의실험결과, 제안한 워터마킹 기법은 기존의 기법들보다 PSNR과 M-SVD에서 우수한 성능을 보였다. 또한, 제안한 워터마킹 기법은 노이즈 첨가, 필터링, JPEG 압축, 블러링, 히스토그램 균일화, 크로핑과 같은 공격에서도 기존의 기법들보다 정규화된 연관성 값에서 보다 강인함을 보였다.

Genetic Diversity and Antibiotic Resistance of Enterococcus faecalis Isolates from Traditional Korean Fermented Soybean Foods

  • Lee, Jong-Hoon;Shin, Donghun;Lee, Bitnara;Lee, Hyundong;Lee, Inhyung;Jeong, Do-Won
    • Journal of Microbiology and Biotechnology
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    • 제27권5호
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    • pp.916-924
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    • 2017
  • Eighty-five Enterococcus faecalis isolates collected from animals (40 isolates), meju (a Korean fermented soybean product; 27 isolates), humans (10 isolates), and various environmental samples (8 isolates) were subjected to multilocus sequence typing (MLST) to identify genetic differences between samples of different origins. MLST analysis resulted in 44 sequence types (STs), and the eBURST algorithm clustered the STs into 21 clonal complexes (CCs) and 17 singletons. The predominant STs, ST695 (21.1%, 18/85) and ST694 (9.4%, 8/85), were singletons, and only contained isolates originating from meju. None of the STs in the current study belonged to CC2 or CC9, which comprise clinical isolates with high levels of antibiotic resistance. The E. faecalis isolates showed the highest rates of resistance to tetracycline (32.9%), followed by erythromycin (9.4%) and vancomycin (2.4%). All isolates from meju were sensitive to these three antibiotics. Hence, MLST uncovered genetic diversity within E. faecalis, and clustering of the STs using eBURST revealed a correlation between the genotypes and origins of the isolates.

웹 정보원의 동시인용분석에 관한 실험적 연구 (An Experimental Study of Cocitation Analysis on Web Information)

  • 정동열;최윤미
    • 정보관리학회지
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    • 제16권2호
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    • pp.7-26
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    • 1999
  • 본 연구는 계량정보학적 분석방법을 웹 정보원에 적용하여 커뮤니케이션 분야의 웹 정보원에 대한 동시인용분석을 실험적으로 실시하고 있다. 특정 학문분야의 지적구조를 규명하기 위하여 링크 건수를 기준으로 선정된 웹 정보원을 대상으로 동시인용빈도, 상관계수행렬, 다차원축적기법과 군집분석 등 동시인용분석 기법을 적용하고 있다. 분석대상이 인쇄문헌에 적용되어 온 분석기법이 웹 정보원에 적용될 수 있음을 규명하고 있다. 아울러 동시인용분석에서 인쇄문헌과 웹 정보원이 갖는 특성과 연구방법상의 차별성 등을 분석한다.

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Improving data reliability on oligonucleotide microarray

  • Yoon, Yeo-In;Lee, Young-Hak;Park, Jin-Hyun
    • 한국생물정보학회:학술대회논문집
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    • 한국생물정보시스템생물학회 2004년도 The 3rd Annual Conference for The Korean Society for Bioinformatics Association of Asian Societies for Bioinformatics 2004 Symposium
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    • pp.107-116
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    • 2004
  • The advent of microarray technologies gives an opportunity to moni tor the expression of ten thousands of genes, simultaneously. Such microarray data can be deteriorated by experimental errors and image artifacts, which generate non-negligible outliers that are estimated by 15% of typical microarray data. Thus, it is an important issue to detect and correct the se faulty probes prior to high-level data analysis such as classification or clustering. In this paper, we propose a systematic procedure for the detection of faulty probes and its proper correction in Genechip array based on multivariate statistical approaches. Principal component analysis (PCA), one of the most widely used multivariate statistical approaches, has been applied to construct a statistical correlation model with 20 pairs of probes for each gene. And, the faulty probes are identified by inspecting the squared prediction error (SPE) of each probe from the PCA model. Then, the outlying probes are reconstructed by the iterative optimization approach minimizing SPE. We used the public data presented from the gene chip project of human fibroblast cell. Through the application study, the proposed approach showed good performance for probe correction without removing faulty probes, which may be desirable in the viewpoint of the maximum use of data information.

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