• Title/Summary/Keyword: Core Sequence

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Prediction of Core Promoter Region with Dependency - Reflecting Decomposition Model (의존성 반영 분해모델에 의한 유전자의 핵심 프로모터 영역 예측)

  • 김기봉;박기정;공은배
    • Journal of KIISE:Software and Applications
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    • v.30 no.3_4
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    • pp.379-387
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    • 2003
  • A lot of microbial genome projects have been completed to pour the enormous amount of genomic sequence data. In this context. the problem of identifying promoters in genomic DNA sequences by computational methods has attracted considerable research attention in recent years. In this paper, we propose a new model of prokaryotic core promoter region including the -10 region and transcription initiation site, that is Dependency-Reflecting Decomposition Model (DRDM), which captures the most significant biological dependencies between positions (allowing for non-adjacent as well as adjacent dependencies). DRDM showed a good result of performance test and it will be employed effectively in predicting promoters in long microbial genomic Contigs.

NUMERICAL STUDY OF THE SLOSHING PHENOMENON IN THE 2-DIMENSIONAL RECTANGULAR TANK WITH VARIABLE FREQUENCY AT A LOW FILLING LEVEL (가진 주파수에 따른 이차원 사각탱크 내부의 슬로싱에 관한 수치적 연구)

  • Jung, J.H.;Lee, C.Y.;Yoon, H.S.;Kim, H.J.
    • Journal of computational fluids engineering
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    • v.20 no.1
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    • pp.16-25
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    • 2015
  • The present study investigates the sloshing phenomena in a two-dimensional rectangular tank at a low filling level by using a level set method based on finite volume method. The code validations are performed by comparing between the present results and previous numerical and experimental results, which gives a good agreement. Various excitation frequencies and excitation amplitude of the 30% filling height tank have been considered in order to observe the dependence of the sloshing behavior on the excitation frequency and amplitude. Regardless of excitation amplitude, the maximum value of wall pressure occurs when the excitation frequency reaches the natural frequency. The time sequence of free surface and corresponding streamlines for excitation frequencies have been presented to analysis the variation of wall pressure according to time, which contributes to explain the double peaks in the time variation of wall pressure.

Analysis of Channel Flow Low During Fuelling Operation of Selected Fuel Channels at Wolsong NPP

  • I. Namgung;Lee, S.K.
    • Nuclear Engineering and Technology
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    • v.34 no.5
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    • pp.502-516
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    • 2002
  • Wolsong NPP are CANDU6 type reactors and there are 4 CANDU6 type reactors in commercial operation. CANDU type reactors require on-power refuelling by two remote controlled F/Ms (Fuelling Machines). Most of channels, fuel bundles are float by channel coolant flow and move toward downstream, however in about 30% of channels the coolant flow are not sufficient enough to carry fuel bundles to downstream. For those channels a special device, FARE (Flow Assist Ram Extension) device, is used to create additional force to push fuel bundles. It has been showing that during fuelling operation of some channels the channel coolant flow rate is reduced below specified limit (80% of normal), and consequently trip alarm signal turns on. This phenomenon occurs on selected channels that are instrumented for the channel flow and required to use the FARE device for refuelling. Hence it is believed that the FARE device causes the problem. It is also suspected that other channels that do not use the FARE device for refuelling might also go into channel flow low state. The analysis revealed that the channel How low occurs as the FARE device is introduced into the core and disappears as the FARE device is removed from the core. This paper presented the FARE device behavior, detailed fuelling operation sequence with the FARE device and effect on channel flow low phenomena. The FARE device components design changes are also suggested, such as increasing the number or now holes in the tube and flow slots in the ring orifice.

A Paleomagnetic Study of Deep-Sea Cores from the KODOS-90 Area in the North Pacific (북태평양 KODOS-90 지역 심해저 퇴적물의 고지자기 연구)

  • 도성재;박찬호
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.1 no.1
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    • pp.1-12
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    • 1996
  • A paleomagnetic study was carried out on three gravity cores recovered from the KODOS-90 area in the North Pacific to obtain a magnetostratigraphic information and to correlate the magnetic records between cores. The sediments bear a stable remanent magnetization and the polarity sequence of the three cores can be correlated with the gomagnetic polarity time scale for the Plio-Pleistocene. The abrupt change in the magnetic susceptibility profile at 285 cm depth of the gravity core 26 indicates the presence of a major hiatus. The average sedimentation rates of the gravity cores 08 and 26 are about 2.7 and 1.4 times higher than that of the gravity core 20 (0.09 cm/100yr), respectively.

Through-field Investigation of Stray Light for the Fore-optics of an Airborne Hyperspectral Imager

  • Cha, Jae Deok;Lee, Jun Ho;Kim, Seo Hyun;Jung, Do Hwan;Kim, Young Soo;Jeong, Yumee
    • Current Optics and Photonics
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    • v.6 no.3
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    • pp.313-322
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    • 2022
  • Remote-sensing optical payloads, especially hyperspectral imagers, have particular issues with stray light because they often encounter high-contrast target/background conditions, such as sun glint. While developing an optical payload, we usually apply several stray-light analysis methods, including forward and backward analyses, separately or in combination, to support lens design and optomechanical design. In addition, we often characterize the stray-light response over a full field to support calibration, or when developing an algorithm to correct stray-light errors. For this purpose, we usually use forward analysis across the entire field, but this requires a tremendous amount of computational time. In this paper, we propose a sequence of forward-backward-forward analyses to more effectively investigate the through-field response of stray light, utilizing the combined advantages of the individual methods. The application is an airborne hyperspectral imager for creating hyperspectral maps from 900 to 1700 nm in a 5-nm-continuous band. With the proposed method, we have investigated the through-field response of stray light to an effective accuracy of 0.1°, while reducing computation time to 1/17th of that for a conventional, forward-only stray-light analysis.

Bioequivalence of AmbrectTM Tablet to MucopectTM Tablet (Ambroxol hydrochloride 30 mg) (뮤코펙트 정(염산암브록솔 30 mg)에 대한 암브렉트 정의 생물학적 동등성)

  • Yoo, Jeong-Yeon;Joung, Sun-Koung;Choi, Mee-Hee;Han, Sang-Beom;Lee, Kyung-Ryul;Lee, Hee-Joo
    • Journal of Pharmaceutical Investigation
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    • v.33 no.3
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    • pp.215-221
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    • 2003
  • A bioequivalence study of $Ambrect^{TM}$ tablets (Dong Wha Pharm. Ind. Co., Ltd.) to $Mucopect^{TM}$ tablets (Boehringer Ingelheim Korea, Ltd.) was conducted according to the guideline of Korea Food and Drug Administration (KFDA). Twenty four healthy male Korea volunteers received each medicine at the ambroxol hydrochloride dose of 30 mg in a $2{\times}2$ crossover study. There was a one-week wash out period between the doses. Plasma concentrations of ambroxol were monitored by a high-performance liquid chromatography for over a period of 24 hours after the administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 24 hr) was calulated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}\;(time\;to\;reach\;C_{max})$ were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t\;and\;C_{max}$. No significant sequence effect was found for all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for $Ambrect^{TM}/Mucopect^{TM}$ were 0.89-1.01 and 0.89-1.02, respectively. These values were within the acceptable bioequivalence intervals of 0.80-1.25. Thus, our study demonstrated the bioequivalence of $Ambrect^{TM}\;and\;Mucopect^{TM}$ with respect to the rate and extent of absorption.

Bioequivalence Of SudoTM Ranitidine Hydrochloride Tablet to CuranTM Tablet (Ranitidine Hydrochloride 150 mg) (큐란 정(염산라니티딘 150 mg)에 대한 수도염산라니티딘정의 생물학적동등성)

  • Lee, Sun-Neo;Ko, Youn-Jung;Kang, Seung-Woo;Yoon, Seo-Hyun;Park, Moo-Sin;Lee, Ye-Ri;Lee, Kyung-Ryul;Lee, Hee-Joo
    • Journal of Pharmaceutical Investigation
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    • v.36 no.3
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    • pp.193-199
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    • 2006
  • A bioequivalence study of $Sudo^{TM}$ Ranitidine HCI tablet (Sudo Pharma. Ind. Co., Ltd.) to $Curan^{TM}$ tablet (Il Dong Pharma. Ind. Co., Ltd.) was conducted according to the guidelines of Korea Food and Drug Administration (KFDA). Twenty four healthy male Korean volunteers received each medicine at the ranitidine hydrochloride dose of 150 mg in a 2x2 crossover study. There was a one week wash-out period between the doses. Plasma concentrations of ranitidine were monitored by a high-turbulent liquid chromatography (HTLC) for over a period of 12 hours after drug administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 12 hr) was calculated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}$ (time to reach $C_{max}$) were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t$ and $C_{max}$. No significant sequence effect was found far all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for $Sudo^{TM}$ Ranitidine $HCl/Curan^{TM}$ were 0.92-1.00 and 0.90-1.03, respectively. These values were within the acceptable bioequivalence intervals of 0.80-1.25. Thus, our study demonstrated the bioequivalence of $Sudo^{TM}$ Ranitidine HCI and $Curan^{TM}$ with respect to the rate and extent of absorption.

Bioequivalence of LANIDIEM® Tablet 4 mg to Vaxar® Tablet 4 mg(Lacidipine 4 mg) (박사르®정 4 밀리그램(라시디핀 4 mg)에 대한 라니디엠®정 4 밀리그램의 생물학적동등성)

  • Lee, Yun-Young;Kim, Hye-Jin;La, Sookie;Cho, Kyung-Hee;Jang, Moon-Sun;Park, Young-Joon;Lee, Hee-Joo
    • Journal of Pharmaceutical Investigation
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    • v.40 no.2
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    • pp.125-131
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    • 2010
  • A bioequivalence study of LANIDIEM$^{(R)}$ tablet 4 mg (Samil. Co., Ltd.) to Vaxar$^{(R)}$ tablet 4 mg (GlaxoSmithKline Co., Ltd.) was conducted according to the guidelines of Korea Food and Drug Administration (KFDA). Forty healthy male Korean volunteers were enrolled in the study and thirty six volunteers completed the study according to the protocol. Thirty six volunteers received each medicine at the lacidipine dose of 4 mg in a $2{\times}2$ crossover study. There was one week wash-out period between the doses. Plasma concentrations of lacidipine were monitored by a high performance liquid chromatography - tandem mass spectrometry (LC-MS/MS) for over a period of 24 hours after drug administration. $AUC_t$ (the area under the plasma concentration-time curve from time zero to 24 hr) was calculated by the linear trapezoidal rule method. $C_{max}$ (maximum plasma drug concentration) and $T_{max}$ (time to reach $C_{max}$) were compiled from the plasma concentration-time data. Analysis of variance was carried out using logarithmically transformed $AUC_t$ and $C_{max}$. No significant sequence effect was found for all of the bioavailability parameters indicating that the crossover design was properly performed. The 90% confidence intervals of the $AUC_t$ ratio and the $C_{max}$ ratio for LANIDIEM$^{(R)}$/Vaxar$^{(R)}$ were log 0.8102~log 1.0417 and log 0.8493~log 1.1439, respectively. These values were within the acceptable bioequivalence intervals of log 0.80~log 1.25. Thus, our study demonstrated the bioequivalence of LANIDIEM$^{(R)}$ tablet 4 mg and Vaxar$^{(R)}$ tablet 4 mg with respect to the rate and extent of absorption.

Molecular Characterization of Apple stem grooving virus Isolated from Talaromyces flavus

  • Shim Hye-Kyung;Hwang Kyu-Hyon;Shim Chang-Ki;Son Su-Wan;Kim Dong-Giun;Choi Yong-Mun;Chung Young-Jae;Kim Dae-Hyun;Jee Hyeong-Jin;Lee Suk-Chan
    • The Plant Pathology Journal
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    • v.22 no.3
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    • pp.260-264
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    • 2006
  • Talaromyces flavus mediates the transmission of Apple stem grooving virus (ASGV) to several host plants. The ASGV-F carried by T.flavus was partially purified from the fungus. Based on sequence analysis and homology searches, this is closely related to other ASGV strains isolated from host plants. The partially purified viral coat protein (CP) was separated on a 12% SDS-polyacrylamide gel and analyzed by Western blotting with an ASGV anti-serum. A single band at 28 kDa reacted with the ASGV anti-serum. The deduced amino acid sequence of the ORF-l showed conserved domains, including an NTP-binding helicase motif, GFAGSGKT. The amino acid sequences of the helicase and CP showed strong homology to other ASGV strains (98%). All ASGV isolated from plants and fungi had salt bridges composed of the CP and the GFAGSGKT motif of the helicase, which are commonly conserved in plant viruses. These results suggest that ASGV-F is one of ASGV strains isolated from T.flavus based on sequence similarity as well as the serological analysis of CP.

Prospective Changes of English Digital Textbook Based on the Universal Design for Learning (보편적 학습 설계에 근거한 영어과 디지털 교과서 개선 방안)

  • Kim, Jeong-ryeol
    • The Journal of the Korea Contents Association
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    • v.15 no.7
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    • pp.674-683
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    • 2015
  • One of the issues with the textbooks pertinent to the current study is whether or not the Universal Design for Learning (UDL) factors have been dealt to satisfy students with different aptitudes in learning the core objectives of the lessons. This study develops a modified version of the UDL analysis criteria from the cross curricular criteria to language teaching and learning and uses it to analyze the sequence of digital English textbooks to investigate the descriptive statistics of the UDL factors in the new textbooks. The result shows that the textbook is designed most favorably to the students with the talent of linguistic aptitude and less favorably to the students with other types of aptitudes. The sequence analysis shows that sentence/word length and appearance of new words are incrementally sequenced as students advance upper grades. However, the syntactic complexity of middle school curves up steeply which is different from the elementary school textbooks. The UDL analysis will provide learning factors to consider when designing digital English textbooks to cover different aptitudinal groups.