• Title/Summary/Keyword: Bio-optical algorithm

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The Study of Pre-processing Algorithm for Improving Efficiency of Optical Flow Method on Ultrasound Image (초음파 영상에서의 Optical Flow 추적 성능 향상을 위한 전처리 알고리즘 개발 연구)

  • Kim, Sung-Min;Lee, Ju-Hwan;Roh, Seung-Gyu;Park, Sung-Yun
    • Journal of the Institute of Electronics Engineers of Korea SC
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    • v.47 no.5
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    • pp.24-32
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    • 2010
  • In this study, we have proposed a pre-processing algorithm newly developed for improving the tracking efficiency of the optical flow method. The developed pre-processing algorithm consists of a median filter, binarization, morphology, canny edge, contour detecting and an approximation method. In order to evaluate whether the optical flow tracking capacity increases, this study applied the pre-processing algorithm to the Lucas-Kanade(LK) optical flow algorithm, and comparatively analyzed its images and tracking results with those of optical flow without the pre-processing algorithm and with the existing pre-processing algorithm(composed of median filter and histogram equalization). As a result, it was observed that the tracking performance derived from the LK optical flow algorithm with the pre-processing algorithm, shows better tracking accuracy, compared to the one without the pre-processing algorithm and the one with the existing pre-processing algorithm. It seems to have resulted by successful segmentation for characteristic areas and subdivision into inner and outer contour lines.

COMPARISON OF RED TIDE DETECTION BY A NEW RED TIDE INDEX METHOD AND STANDARD BIO-OPTICAL ALGORITHM APPLIED TO SEA WIFS IMAGERY IN OPTICALLY COMPLEX CASE-II WATERS

  • Shanmugam Palanisamy;Ahn Yu-Hwan
    • Proceedings of the KSRS Conference
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    • 2005.10a
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    • pp.445-449
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    • 2005
  • Various methods to detect the phytoplankton/red tide blooms in the oceanic waters have been developed and tested on satellite ocean color imagery since the last two and half decades, but accurate detection of blooms with these methods remains challenging in optically complex turbid waters, mainly because of the eventual interference of absorbing and scattering properties of dissolved organic and particulate inorganic matters with these methods. The present study introduces a new method called Red tide Index (Rl), providing indices which behave as a good measure of detecting red tide algal blooms in high scattering and absorbing waters of the Korean South Sea and Yellow Sea. The effectiveness of this method in identifying and locating red tides is compared with the standard Ocean Chlorophyll 4 (OC4) bio-optical algorithm applied to SeaWiFS ocean imagery, acquired during two bloom episodes on 27 March 2002 and 28 September 2003. The result revealed that OC4 bio-optical algorithm falsely identifies red tide blooms in areas abundance in colored dissolved organic and particulate inorganic matter constituents associated with coastal areas, estuaries and river mouths, whereas red tide index provides improved capability of detecting, predicting and monitoring of these blooms in both clear and turbid waters.

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Homing Navigation Based on Path Integration with Optical Flow (광학 흐름 기반 경로 누적법을 이용한 귀소 내비게이션)

  • Cha, Young-Seo;Kim, Dae-Eun
    • Journal of Institute of Control, Robotics and Systems
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    • v.18 no.2
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    • pp.94-102
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    • 2012
  • There have been many homing navigation algorithms for robotic system. In this paper, we suggest a bio-inspired navigation model. It builds path integration based on optical flow. We consider two factors on robot movements, translational movement and rotational movement. For each movement, we found distinguishable optical flows. Based on optical flow, we estimate ego-centric robot movement and integrate the path optimally. We can determine the homing direction and distance. We test this algorithm and evaluate the performance of homing navigation for robotic system.

Optical Skin-fat Thickness Measurement Using Miniaturized Chip LEDs: A Preliminary Human Study

  • Ho, Dong-Su;Kim, Ee-Hwa;Hwang, In-Duk;Shin, Kun-Soo;Oh, Jung-Taek;Kim, Beop-Min
    • Journal of the Optical Society of Korea
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    • v.13 no.3
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    • pp.304-309
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    • 2009
  • We tested the feasibility of measuring fat thickness using a miniaturized chip LED sensor module, testing 12 healthy female subjects. The module consisted of a single detector and four sources at four different source-detector distances (SD). A segmental curve-fitting procedure was applied, using an empirical algorithm obtained by Monte-Carlo simulation, and fat thicknesses were estimated. These thicknesses were compared to computed-tomography (CT) results; the correlation coefficient between CT and optical measurements was 0.932 for bicep sites. The mean percentage error between the two measurements was 13.12%. We conclude that fat thickness can be efficiently measured using the simple sensor module.

Comparison of Bio-Optical Properties of the Yellow Sea and the East Sea using SeaWiFS Data (SeaWiFS 자료를 이용한 황해와 동해의 생물광학 특성 비교)

  • Jeong, Jong-Chul
    • Journal of the Korean Association of Geographic Information Studies
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    • v.4 no.2
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    • pp.38-45
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    • 2001
  • Three lines from $36_{\circ}$ N, $124_{\circ}$ E, and $132_{\circ}$ E of the East Sea and the Yellow Sea were chosen to extract spectra of normalized water leaving radiances. Comparative analysis of the OCTS algorithm and SeaWiFS(OC-2) algorithms was presented here. OCTS algorithm have more overestimate than SeaWiFS(OC-2 algorithm) for detecting chlorophyll concentration. Atmospheric correction algorithm that is excluded the effect of SS in the case 2 water need for long term ocean environmental monitoring of the East Sea and the Yellow Sea. And, considered the effect of CDOM and SS, bio-optical algorithm have to be developed in this research.

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Validation of chlorophyll algorithm in Ulleung Basin, East/Japan Sea

  • Yoo, Sin-Jae;Kim, Hyun-Cheol;Lee, Jeong-ah;Park, Mi-Ok
    • Korean Journal of Remote Sensing
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    • v.18 no.1
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    • pp.35-42
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    • 2002
  • The results of our observation in May 2000 indicated that the SeaWiFS algorithm (O'Reilley et al., 1998), which was adopted for OSMI data processing, overestimated the actual chlorophyll values. This was rather unexpected in that there were good reasons to expect that the bio-optical properties of East/Japan Sea belonged to Case 1 water and in such case, the OC2 algorithm would give unbiased estimates of actual chlorophyll a values. In November 2000, a cruise conducted bio-optical surveys in the same area. This time we added HPLC (High Performance Liquid Chromatography) method for measuring chlorophyll a concentration to the standard fluorometric method, which we hale been using during the past Fluorometric method with acidification is known to result in under/overestimation of chlorophyll values in many parts of the world oceans, while it is easier and cheaper than HPLC method. To our surprise, the comparison of HPLC chlorophyll and fluorometric chlorophyll values show that fluorometric values gave an underestimation up to 50%. This error was due to the presence of accessory pigments such as chlorophyll b. Considering this error, our precious result of May 2000(Yoo et al., 2000) might have to be reinterpreted. Calculation of reflectance at 490 and 555nm, however, indicated that this is not still enough to explain the discrepancies.

Development of the Bio-Optical Algorithms to Retrieve the Ocean Environmental Parameters from GOCI

  • Ryu, Joo-Hyung;Moon, Jeong-Eon;P., Shanmugam;Min, Jee-Eun;Ahn, Yu-Hwan
    • Proceedings of the KSRS Conference
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    • v.1
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    • pp.82-85
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    • 2006
  • The Geostationary Ocean Color Imager (GOCI) will be loaded in Communication, Ocean and Meteorological Satellite (COMS). To efficiently apply the GOCI data in the variety of fields, it is essential to develop the standard algorithm for estimating the concentration of ocean environmental components (, , and ). For developing the empirical algorithm, about 300 water samples and in situ measurements were collected from sea water around the Korean peninsula from 1998 to 2006. Two kinds of chlorophyll algorithms are developed by using statistical regression and fluorescence technique considering the bio-optical properties in Case-II waters. The single band algorithm for is derived by relationship between Rrs (555) and in situ concentration. The CDOM is estimated by absorption coefficient and ratio of Rrs(412)/Rrs(555). These standard algorithms will be programmed as a module of GOCI Data Processing System (GDPS) until 2008.

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Classification of Midinfrared Spectra of Colon Cancer Tissue Using a Convolutional Neural Network

  • Kim, In Gyoung;Lee, Changho;Kim, Hyeon Sik;Lim, Sung Chul;Ahn, Jae Sung
    • Current Optics and Photonics
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    • v.6 no.1
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    • pp.92-103
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    • 2022
  • The development of midinfrared (mid-IR) quantum cascade lasers (QCLs) has enabled rapid high-contrast measurement of the mid-IR spectra of biological tissues. Several studies have compared the differences between the mid-IR spectra of colon cancer and noncancerous colon tissues. Most mid-IR spectrum classification studies have been proposed as machine-learning-based algorithms, but this results in deviations depending on the initial data and threshold values. We aim to develop a process for classifying colon cancer and noncancerous colon tissues through a deep-learning-based convolutional-neural-network (CNN) model. First, we image the midinfrared spectrum for the CNN model, an image-based deep-learning (DL) algorithm. Then, it is trained with the CNN algorithm and the classification ratio is evaluated using the test data. When the tissue microarray (TMA) and routine pathological slide are tested, the ML-based support-vector-machine (SVM) model produces biased results, whereas we confirm that the CNN model classifies colon cancer and noncancerous colon tissues. These results demonstrate that the CNN model using midinfrared-spectrum images is effective at classifying colon cancer tissue and noncancerous colon tissue, and not only submillimeter-sized TMA but also routine colon cancer tissue samples a few tens of millimeters in size.

Signl processing method and diagnostic algorithm for arterial oxygen-saturation measument (산소포화도 측정을 위한 신호처리방법 및 계산 알고리즘)

  • 김수진;황돈연;전계진;이종연;정성규;윤길원
    • Korean Journal of Optics and Photonics
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    • v.11 no.6
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    • pp.452-456
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    • 2000
  • A measurement unit and signal processing algorithm have been developed for predicting arterial oxygen saturation noninvasively. The measurement set-up was composed of a probe including light source and photodetector, optical signal processing section, LED driving circuit, PC interface software for data acquisition and data processing software. Light from the LED's was irradiated onto the finger nail bed and transmitted light was measured at different wavelengths. An effective baseline correction method was developed and measured data were analyzed by using various data processing methods and prediction algOlithms. For performance evaluation, a pulse oximeter simulator (Bio- Tek Instrument Inc.) was used as reference. The best performance in terms of the correlation coefficient and the standard deviation was obtained under the following conditions; when the arterial signals were computed in terms of area rather than peak-valley difference, and when the algorithm calculating by $In(I_p/I_v)/I_{avr}$ value for pulsation waveform was used. In in vivo test, prediction was improved when the developed baseline correction method was used. In addition, wavelengths of 660 nm and 940 nm provided better linearity and precision than wavelengths of 660 nm and 805 nm. 05 nm.

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Optimizing the bio-optical algorithm for quantifying Chlorophyll-a and Phycocyanin in inland water, Korea (대한민국 담수계의 클로로필a와 피코시아닌 정량화를 위한 분광알고리즘 최적화 연구)

  • Pyo, JongCheol;Pachepsky, Yakov;Lee, Hyuk;Park, Yongeun;Cho, Kyung Hwa
    • Proceedings of the Korea Water Resources Association Conference
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    • 2017.05a
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    • pp.101-101
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    • 2017
  • 근래에 대한민국 담수계에 조류 대발생으로 인한 수질악화 문재가 대두되고 있다. 또한 독성물질을 생성하는 남조류종이 우점하는 현상으로인해 수질문제와더불에 생태계와 인간의 건강도 잠재적인 위험을 받고있는 실정이다. 이와같은 조류 대발생으로인한 피해를 최소화하기위해 효과적인 수질관리가 필수적이다. 원격탐사기술은 조류의 공간적인 분포를 해석하고 농도를 정량화하기위해 이용되고 있다. 현재까지 많은 분광알고리즘들이 개발되어 담수유역에 적용이 되고 있다. 수체마다 다른 분광특성 때문에 알고리즘내의 파라미터 및 분광밴드 조정이 필수적이다. 하지만 대부분의 연구에선 파라미터와 밴드의 변경에 따른 결과향상에만 초점이 맞춰지고 있어 분광알고리즘내의 파라미터와 분광밴드사이의 관계 이해 뿐만아니라 알고리즘 최종 산출물에 대한 영향에 관한 설명이 전무한 실정이다. 본 연구에선, 대한민국 백제보를 대상으로 현장모니터링 및 조류추출 실험을 진행하였고, 이를 기반으로 5가지 클로로필a 알고리즘과 2가지 피코시아닌 알고리즘을 구축하였다. 알고리즘내에서 변수들의 관계와 영향을 알아보기위해 민감도 분석을 실시하였다. 민감도 분석 조건을 기반으로 one-objective 최적화 및 multi-objective 최적화를 실시하여 백제보수계를 대표할 수 있는 최적 변수들을 모의하였다. 민감도 분석결과 후방산란계수에 영향을 미치는 파라미터와 조류 생체량에 영향을 미치는 파라미터가 다른 변수들 및 알고리즘 농도산정결과에 가장 민감한 것으로 나타났다. multi-objective 최적화 결과가 one-objective 결과 및 reference 결과보다 대부분 정확도가 향상되었고 흡광도 계수를 함께 고려할 수 있기 때문에 백제보 수계의 분광특성을 함께 고려하여 대표할 수 있는 장점을 가지는 것으로 나타났다. 따라서, 본 연구는 민감도 분석을 활용하여 분광알고리즘 내의 변수들의 이해를 도모하였고, 최적화 기법 중, multi-objective 최적화 기법이 백제보의 분광특성을 대변하는 최적변수를 제시할 수 있음과 동시에 보다 나은 정확성을 제고할 수 있음을 확인하였다.

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