• 제목/요약/키워드: Basis Set

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MP2 Basis Set Limit Binding Energy Estimates of Hydrogen-bonded Complexes from Extrapolation-oriented Basis Sets

  • Park, Young-Choon;Lee, Jae-Shin
    • Bulletin of the Korean Chemical Society
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    • 제28권3호
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    • pp.386-390
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    • 2007
  • By use of a simple two-point extrapolation scheme estimating the correlation energies of the molecules along with the basis sets specifically targeted for extrapolation, we have shown that the MP2 basis set limit binding energies of large hydrogen-bonded complexes can be accurately predicted with relatively small amount of computational cost. The basis sets employed for computation and extrapolation consist of the smallest correlation consistent basis set cc-pVDZ and another basis set made of the cc-pVDZ set plus highest angular momentum polarization functions from the cc-pVTZ set, both of which were then augmented by diffuse functions centered on the heavy atoms except hydrogen in the complex. The correlation energy extrapolation formula takes the (X+1)-3 form with X corresponding to 2.0 for the cc-pVDZ set and 2.3 for the other basis set. The estimated MP2 basis set limit binding energies for water hexamer, hydrogen fluoride pentamer, alaninewater, phenol-water, and guanine-cytosine base pair complexes of nucleic acid by this method are 45.2(45.9), 36.1(37.5), 10.9(10.7), 7.1(6.9), and 27.6(27.7) kcal/mol, respectively, with the values in parentheses representing the reference basis set limit values. A comparison with the DFT results by B3LYP method clearly manifests the effectiveness and accuracy of this method in the study of large hydrogen-bonded complexes.

Optimal Basis Functions for Siegert Resonance State Representation in Al2 Electronic Predissociation

  • Jang, Hyo Weon
    • 대한화학회지
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    • 제57권2호
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    • pp.172-175
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    • 2013
  • We compare the relative usefulness of common basis functions and numerical integration methods in representing complex resonance state encountered in the molecular scattering problem of aluminum dimer electronic predissociation. Specifically, the basis set size and computing CPU times are monitored in order to find the minimum requirement for ensuring the modest accuracy of calculated resonance energies (0.1 $cm^{-1}$) for more than 100 resonance states. The combination of the so-called one-dimensional box eigenfunctions and energy-dependent boundary functions are found to be most efficient if integration is done using the basis set quadrature rules.

보편적인 기저함수를 이용한 개인의 머리전달함수 모델링 (Modeling of individual head-related impulse responses using a set of general basis functions)

  • 황성목;박영진;박윤식
    • 한국소음진동공학회:학술대회논문집
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    • 한국소음진동공학회 2007년도 추계학술대회논문집
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    • pp.1430-1436
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    • 2007
  • A principal components analysis (PCA) of the median head-related impulse responses (HRIRs) in the CIPIC HRTF database reveals that the individual HRIRs can be adequately reconstructed by a linear combination of 12 orthonormal basis functions. These basis functions can be used generally to model arbitrary HRIRs, which are not included in the process to obtain the basis functions. To clarify whether these basis functions can be used to model other set of arbitrary HRIRs, an numerical error analysis for modeling and a series of subjective listening tests were carried out using the measured and modeled HRIRs. The results showed that the set of individual HRIRs, which were measured in our lab using different measurement conditions, techniques, and source positions, can be well modeled with reasonable accuracy. Furthermore, all subjects reported not only the accurate vertical perception but also the front-back discrimination with the modeled HRIRs based on 12 basis functions. However, as less basis functions were used for HRIR modeling, the modeling accuracy and localization performance deteriorated.

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Effect of Basis Set Superposition Error on the MP2 Relative Energies of Gold Cluster Au6

  • Kim, Kyoung-Hoon;Kim, Jong-Chan;Han, Young-Kyu
    • Bulletin of the Korean Chemical Society
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    • 제30권4호
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    • pp.794-796
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    • 2009
  • We have studied the structures and stabilities of Au6 to explore the origin of the large discrepancy between relative energies obtained from the density functional theory (DFT) and ab initio correlated levels of theory. The MP2 methods significantly overestimate the stability of the non-planar isomer when the double-$\zeta$ polarization quality of basis sets, such as LANL2DZ+1f and CEP31G+1f, are used. However, we show that such preference for the non-planar structure at the MP2 level mainly originates from the large basis set superposition error.

보편적인 기저함수를 이용한 중앙면상의 머리전달함수 모델링 (Modeling of Median-plane Head-related Impulse Responses Using a Set of General Basis Functions)

  • 황성목;박영진;박윤식
    • 한국소음진동공학회논문집
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    • 제18권4호
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    • pp.448-457
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    • 2008
  • A principal components analysis (PCA) of the median-plane head-related impulse responses (HRIRs) in the CIPIC HRTF database reveals that the individual HRIRs in the median plane can be adequately reconstructed by a linear combination of 12 orthonormal basis functions. These basis functions can be used to model arbitrary median-plane HRIRs, which are not included in the process to obtain the basis functions. Memory size can be reduced up to 5-fold depending on the number of HRIRs to be modeled. To clarify whether these basis functions can be used to model other set of arbitrary median plane HRIRs, a numerical error analysis for modeling and a series of subjective listening tests were carried out using the measured and modeled HRIRs. The results showed that the set of individual HRIRs in the median plane, which were measured in our lab using different measurement conditions, techniques, and source positions, can be modeled with reasonable accuracy. All subjects, involved in the subjective listening test, reported not only the accurate vertical perception but also the front-back discrimination with the modeled HRIRs based on 12 basis functions.

Development of Nested PCR Primer Set for the Specific and Highly Sensitive Detection of Human Parvovirus B19

  • Cho, Kyu-Bong
    • 대한의생명과학회지
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    • 제24권4호
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    • pp.390-397
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    • 2018
  • For the specific detection of human Parvovirus B19 (HuPaV-B19), we designed ten specific PCR primers from 3,800~4,500 nucleotides of HuPaV-B19 complete genome (NC_000883.2). Seventeen candidate PCR primer sets for specific detecting HuPaV-B19 were constructed. In specific reaction of HuPaV-B19, seventeen PCR primer sets showed specific band, however five PCR primer sets were selected basis of band intensity, amplicon size and location. In non-specific reaction with seven reference viruses, four PCR primer sets showed non-specific band, however one PCR primer set is not. Detection sensitivity of final selective PCR primer set was $100fg/{\mu}L$ for 112 minute, and PCR amplicon is 539 base pairs (bp). In addition, nested PCR primer set was developed, for detection HuPaV-B19 from a low concentration of contaminated samples. Selection of nested PCR primer set was basis of sensitivity and groundwater sample tests. Detection sensitivity of final selective PCR and nested PCR primer sets for the detection of HuPaV-B19 were $100fg/{\mu}L$ and $100ag/{\mu}L$ basis of HuPaV-B19 plasmid, it was able to rapid and highly sensitive detection of HuPaV-B19 than previous reports. We expect developed PCR primer set in this study will used for detection of HuPaV-B19 in various samples.

연속압연기에서 OFF GAUGE 저감을 위한 DYNAMIC SET-UP 제어기술 (DYNAMIC SET-UP CONTROL OF TANDEM COLD MILL)

  • 노호섭;최병조;조뇌하;이재훈;김익준;진철제;박기영
    • 한국소성가공학회:학술대회논문집
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    • 한국소성가공학회 1999년도 제3회 압연심포지엄 논문집 압연기술의 미래개척 (Exploitation of Future Rolling Technologies)
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    • pp.126-131
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    • 1999
  • In order to reduce the length of off-gauge at FGC(Flying gauge change) point, We adopted dynamic set up in No. 4 cold rolling mill. The conventional set-up of FGC(Flying gauge change) was calculated on the basis of preset values in the process control computer, so the difference between actual strip thickness and preset thickness cause long off-gauge. The dynamic SET-UP control was calculated on the basis of actual strip thickness of FGC(Flying gauge change) point from X-ray gauge of mill entry and No.i stand. We applied dynamic SET-UP control in September last year. Compare to the previous result, the length of off-gauge is reduced by about 36%.

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Basis Set Requirement for Small Components Besides Kinetic Balance in Relativistic Self-Consistent-Field Calculations of Many Electron Systems

  • Lee, Yoon-Sup;Baeck, Kyoung-Koo
    • Bulletin of the Korean Chemical Society
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    • 제7권6호
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    • pp.428-433
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    • 1986
  • It is demonstrated by using a highly positive uranium ion as a test case that the exact relation between the small and the large components of a Dirac spinor in relativistic self-consistent-field (RSCF) calculations is not fully satisfied by the kinetic balance condition only even for two electron systems. For a fixed number of large component basis functions, total energies are sensitive to the change of the size of the small component basis sets even after the kinetic balance condition is fully satisfied. However, the kinetic balance condition appears to be a reasonable guideline in generating reliable and practical basis sets for most applications of RSCF calculations. With a complete small component basis set, energies from RSCF calculations exhibit a variational behavior, implying the stability of the present RSCF procedure.

진보된 혼돈 대각화 방법을 이용한 상호작용하는 페르미온 계의 기저상태 계산 (Ground State Computation of Interacting Fermion Systems by using Advanced Stochastic Diagonalization)

  • 안설아;조명원
    • 한국콘텐츠학회:학술대회논문집
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    • 한국콘텐츠학회 2007년도 추계 종합학술대회 논문집
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    • pp.209-211
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    • 2007
  • 2차원 상호작용하는 페르미온 계에 대한 혼돈 대각화 계산의 컴퓨터 계산 시간이, 대칭성 연산과 같은 여러 가지 방법을 이용함으로써 감소되었다. 첫째로, 각각의 격자를 업스핀(${\uparrow}$) 격자와 다운스핀(${\downarrow}$) 격자로 나누어서 2부분 격자가 가능케 했다. 이에 따라, 유효한 바탕 상태는 업스핀 배열에 다운스핀 배열을 겹침으로써 얻어진다. 결과적으로, 시험 바탕 상태를 저장하는데 사용되는 메모리 공간이 현저하게 감소되었다. 두 번째로, 바탕 상태 집합을 구성할 때, 해밀토니안 행렬의 원소들을 순람표에 기록하였다. 그럼으로써, 혼돈 대각화 과정에서 해밀토니안 행렬의 원소들을 반복적으로 계산하는 것을 피했다. 세 번째로, 바탕 상태 집합에 대칭성 연산을 적용함으로써 원 바탕 상태 집합이 대칭성 연산의 고유벡터들로 구성된 새로운 바탕 상태 집합으로 변환되었다. 기저 상태 파동함수는 대칭적인 바탕상태 (결합상태) 집합으로부터 구성되었다. 결과로서, 대칭성 연산을 이용함으로써, 혼돈 대각화 계산에 쓰이는 바탕상태의 총 개수가 50%까지 감소되었다.

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