DOI QR코드

DOI QR Code

Development of Nested PCR Primer Set for the Specific and Highly Sensitive Detection of Human Parvovirus B19

  • Cho, Kyu-Bong (Department of Biomedical Laboratory Science, Shinhan University)
  • Received : 2018.11.19
  • Accepted : 2018.12.13
  • Published : 2018.12.31

Abstract

For the specific detection of human Parvovirus B19 (HuPaV-B19), we designed ten specific PCR primers from 3,800~4,500 nucleotides of HuPaV-B19 complete genome (NC_000883.2). Seventeen candidate PCR primer sets for specific detecting HuPaV-B19 were constructed. In specific reaction of HuPaV-B19, seventeen PCR primer sets showed specific band, however five PCR primer sets were selected basis of band intensity, amplicon size and location. In non-specific reaction with seven reference viruses, four PCR primer sets showed non-specific band, however one PCR primer set is not. Detection sensitivity of final selective PCR primer set was $100fg/{\mu}L$ for 112 minute, and PCR amplicon is 539 base pairs (bp). In addition, nested PCR primer set was developed, for detection HuPaV-B19 from a low concentration of contaminated samples. Selection of nested PCR primer set was basis of sensitivity and groundwater sample tests. Detection sensitivity of final selective PCR and nested PCR primer sets for the detection of HuPaV-B19 were $100fg/{\mu}L$ and $100ag/{\mu}L$ basis of HuPaV-B19 plasmid, it was able to rapid and highly sensitive detection of HuPaV-B19 than previous reports. We expect developed PCR primer set in this study will used for detection of HuPaV-B19 in various samples.

Keywords

References

  1. Bergallo M, Costa C, Sidoti F, Novelli M, Ponti R, Castagnoli C, et al. Variants of Parvovirus B19: bioinformatical evaluation of nested PCR assays. Intervirology. 2008. 51: 75-80. https://doi.org/10.1159/000127429
  2. Bock CT, Duchting A, Utta F, Brunner E, Sy BT, Klingel K, et al. Molecular phenotypes of human parvovirus B19 in patients with myocarditis. World J Cardiol. 2014. 26: 183-195.
  3. Bonvicini F, Manaresi E, Gallinella G, Gentilomi GA, Musiani M, Zerbini M. Diagnosis of fetal parvovirus B19 infection: value of virological assays in fetal specimens. BJOG. 2009. 116: 813-817. https://doi.org/10.1111/j.1471-0528.2009.02109.x
  4. Bostic JR, Brown KE, Young NS, Koenig S. Quantitative analysis of neutralizing immune responses to human parvovirus B19 using a novel reverse transcriptase-polymerase chain reactionbased assay. J Infect Dis. 1999. 179: 619-626. https://doi.org/10.1086/314648
  5. Brown CS, van Bussel MJ, Wassenaar AL, van Elsacker-Niele AM, Weiland HT, Salimans MM. An immunofluorescence assay for the detection of parvovirus B19 IgG and IgM antibodies based on recombinant viral antigen. J Virol Methods. 1990. 29: 53-62. https://doi.org/10.1016/0166-0934(90)90007-3
  6. Cassinotti P, Weitz M, Siegl G. Human Parvovirus B19 infections: routine diagnosis by a new nested polymerase chain reaction assay. J Med Virol. 1993. 40: 228-234. https://doi.org/10.1002/jmv.1890400311
  7. Casteel MJ, Gold A, Sobsey MD, Brecher ME. Photosensitization of hepatitis A virus and other non-enveloped RNA viruses by mesosubstituted porphyrins in water and human plasma. (Holick M.F. Eds). 2002. Biologic Effects of Light 2001. Boston, MA.
  8. Cho KB. Construction of Improved PCR Primer Set for the Detection of Human Enteric Adenovirus 41. Biomedical Science Letters. 2018. 24: 230-238. https://doi.org/10.15616/BSL.2018.24.3.230
  9. Gray JJ, Cohen BJ, Desselberger U. Detection of human parvovirus B19-specific IgM and IgG antibodies using a recombinant viral VP1 antigen expressed in insect cells and estimation of time of infection by testing for antibody avidity. J Virol Methods.
  10. Heegaard ED, Brown KE. Human parvovirus B19. Clin Microbiol Rev. 2002. 15: 485-505. https://doi.org/10.1128/CMR.15.3.485-505.2002
  11. Kibbe WA. OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res. 2007. 35: 43-46.
  12. Kittigul L, Ekchaloemkiet S, Utrarachkij F, Siripanichgon K, Sujirarat D, Pungchitton S, et al. An efficient virus concentration method and RT-nested PCR for detection of rotaviruses in environmental water samples. J Virol Methods. 2005. 124: 117-122. https://doi.org/10.1016/j.jviromet.2004.11.013
  13. Marano G, Vaglio S, Pupella S, Facco G, Callizzani G, Candura F, et al. Human parvovirus B19 and blood product safety: a tale of twenty years of improvements. Blood Transfus. 2015. 13: 184-186.
  14. Mori J, Field AM, Clewley JP, Cohen BJ. Dot blot hybridization assay of B19 virus DNA in clinical specimens. J Clin Microbiol. 1989. 27: 459-464.
  15. Park S, Lee S, Chung H, Park J, Park S, et al., Development and verification of genetically diagnostic method for the detection of non-regulated viruses from water environment (I). National Institute of Environmental Research; 2016 Dec. p17. Report No. NIER-RP2016-190.
  16. Schmidt M, Themann A, Drexler C, Bayer M, Lanzer G, Menichetti E, et al. Blood donor screening for parvovirus B19 in Germany and Austria. Transfusion. 2007. 47: 1775-1782. https://doi.org/10.1111/j.1537-2995.2007.01443.x
  17. Schwarz TF, Roggendorf M, Deinhardt F. Human parvovirus B19: ELISA and Immunobolt assays. J Virol Methods. 1988. 20: 155-168. https://doi.org/10.1016/0166-0934(88)90149-8
  18. Sevall JS, ritenhous J, Peter JB. Laboratory diagnosis of parvovirus B19 infection. J Clin Lab Anal. 1992. 6: 171-175. https://doi.org/10.1002/jcla.1860060402
  19. Sewell DL. Laboratory-associated infections and biosafety. Clin Microbiol Rev.1995. 8: 389-405. https://doi.org/10.1128/CMR.8.3.389
  20. Smith CJ, Osborn AM. Advantages and limitations of quantative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol. 2009. 67: 6-20. https://doi.org/10.1111/j.1574-6941.2008.00629.x
  21. Nagai K, Horita N, Yamamoto M, Tsukahara T, Nagakura H, Tashiro K, et al., Diagnostic test accuracy of loop-mediated isothermal amplification assay for mycobacterium tuberculosis: systematic review and meta-analysis. Sci Rep. 2016. 6: 39090. https://doi.org/10.1038/srep39090
  22. White DG, Woolf AD, Mortimer PP, Cohen BJ, Blake DR, Bacon PA. Human parvovirus arthropathy. Lancet. 1985. 1: 419-421.
  23. Yamakawa Y, Oka H, Hori S, Arai T, Izumi R. Detection of human parvovirus B19 DNA by nested polymerase chain reaction. Obstet Gynecol. 1995. 86: 126-129. https://doi.org/10.1016/0029-7844(95)00092-6