• Journal of the Korean Society of Environmental Restoration Technology
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• v.24 no.1
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• pp.37-51
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• 2021

The purpose of this research is to develop the Habitat Suitability Index (HSI) for habitat environments of Aix galericulata (A. galericulata) and Dendrocopos major (D. major), which tend to inhabit urban environments. A. galericulata and D. major are the keystone species representing the ecosystem of wetlands and forests. Based on the analysis of their urban habitat environments, this study selects artificially adjustable levels of the environmental index in order to produce the HSI model, which can be used when either restoring or creating the urban habitats for these species. To develop the HSI, we conducted field surveys at Jungnangcheon Stream, Changgyeonggung, Jangneung, Bangbae Neighborhood Park, Gildong Ecological Park, and Seodalsan Mountain. These surveys were conducted between April and August 2020, and this period includes the breeding season of both A. galericulata and D. major. Based on our findings from the surveys, we conclude that there are six SI factors for A. galericulata. These include (1) the presence of alluvial islands, (2) waterfront vegetation cover rate, (3) type of aquatic plants for food, (4) size of forest patch, (5) type of trees in nearby forests, and (6) connectivity of waterfront and forest. We also conclude that there are five SI factors for D. major, which include (1) size of forest patch, (2) rate of broadleaf trees in forest patches, (3) type of nesting trees, (4) diameter at breast height (DBH) of nesting trees, and (5) density of dead trees. The result of this research can provide future studies with useful guidance when both (1) comparing the habitat suitability of the target species in different environments and (2) restoring or creating habitats for these species.

• Fisheries and Aquatic Sciences
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• v.9 no.2
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• pp.97-100
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• 2006

To determine whether the tetracycline resistance genes tet (34), tet (M), and tet (S) can be transferred among bacteria, we used a filter mating experiment allowing intimate cell-cell contact between donor and recipient. The tet(34) gene, conveyed on a chromosome of Vibrio species (No. 6 and SW-42) was not transferred to Escherichia coli JM109, suggesting that it is not transferred among bacterial species. The tet (M) gene was transferred from three Vibrio strains (4-E, SW-18, and SW-38) to E. coli at frequencies of $8.5{\times}10^{-5}\;to\;2.1{\times}10^{-6}$. The tet(S) gene was transferred from Lactococcus garvieae KHS98032 to E. coli at a frequency of $1.8{\times}10^{-6}$. Transconjugated recipients showed increased minimum inhibitory concentrations against oxytetracycline. Although the donors possess the Tn916-Tn1545 transposons, they were not detected in transformed recipients, suggesting that the transfer of tet(M) and tet(S) is mediated by elements or mechanisms. Two ribosomal protect protein genes were also transmissible from marine bacteria to E. coli, suggesting gene hopping among marine, terrestrial, and human environments.

• Journal of Ecology and Environment
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• v.38 no.4
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• pp.541-544
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• 2015

We report the status of wetland vascular plant species in Korea including the whole peninsula and its adjacent islands. This analysis was based on database from our previous categorized list. In all, 4,050 taxa have been reported, including 3,769 native and 281 naturalized. Of these, 479 taxa (12%) are considered as wetland vascular indicator species: 240 obligate wetland plants (OBW) and 239 facultative upland plants (FACW). Approximately 31% of those 479 taxa, i.e., 149 taxa, are labelled as aquatic macrophytes. Wetland plants, mostly herbaceous but some woody, inhabit aquatic bodies and wet meadows. Except for two OBW and six FACW taxa, the rest of the plants are summer-green only. The information provided here is valuable for making assessments of wetland ecosystem health, as well as for developing management plans to preserve and restore wetlands and their resident plant species while also creating artificial wetland environments.

• ALGAE
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• v.27 no.4
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• pp.283-294
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• 2012

The physico-chemical and environmental factors of stoneworks were examined from March 2009 to October 2010, and aerial algae living on 24 stoneworks in Korea were identified. Fifty aerial algae were found in 24 stoneworks. Of the 50 taxa, 30 taxa were cyanophytes, 16 taxa were bacillariophytes, 3 taxa were chlorophytes, and 1 taxon was a xanthophyte. Nine species, including Aphanocapsa rivularis, which is known to only live in aquatic conditions, inhabited both aquatic and aerial environments. Synechococcus aeruginosus, Scytonema coactile var. thermalis, S. coactile var. minor, Stigonema ocellatum f. ocellatum, and Oscillatoria boryana were newly recorded in Korea. As a result of a correlation analysis between algae and the physico-chemical and ecological environmental factors, the taxa were divided into the bryophyte group, the humidity group, and the dry group. Although the bryophyte group was included within the humidity group, it was separated from the dry group. Taxa in the bryophyte group including Nostoc commune which was distributed in more humid areas than those in the humidity group. However, dry group taxa including Chroococcus pallidus were distributed in lower humidity than that of the two other groups. Correlations among other environmental factors were tested to identify other factors that could substitute for humidity and light intensity. As a result, tree distance, water distance, and plant coverage were replaceable environmental factors.

• Environmental Analysis Health and Toxicology
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• v.30
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• pp.6.1-6.7
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• 2015

Objectives This study aimed to estimate the effects of 4-nonylphenol (NP), a ubiquitously present surfactant in aquatic environments, on the anti-oxidant systems of the liver in the Far Eastern catfish Silurus asotus. Methods Changes in biochemical parameters involved in glutathione (GSH)-related and other anti-oxidant systems were analyzed following 4 weeks of 4-NP administration (0.1 and 1.0 mg/kg diet) via a formulated diet to catfish. Results 4-NP exposure induced an elevation in hepatic lipid peroxide levels and an accompanying decrease in reduced state GSH after 2 weeks, suggesting pro-oxidant effects of the chemical in catfish. This oxidative stress was associated with an inhibition of the GSH-utilizing enzyme glutathione peroxidase at the same time point. This inhibition was restored after 4 weeks. The activities of other anti-oxidant enzymes, i.e., glutathione reductase, superoxide dismutase and catalase were increased after 4 weeks. These enzyme increases occurred more strongly at the higher 4-NP concentration (1.0 mg/kg diet). Conclusions 4-NP given to catfish at 0.1 to 1.0 mg/kg diet, concentrations relevant to environmental levels, depletes the endogenous anti-oxidant molecule GSH and temporarily inhibits GSH-related anti-oxidant enzymes. Such declines in anti-oxidant capacity and elevated oxidative stress seem to be compensated eventually by subsequent activation of various anti-oxidant enzyme systems.

• Fisheries and Aquatic Sciences
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• v.14 no.3
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• pp.218-225
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• 2011

Dual frequency identification sonar (DIDSON) is an imaging sonar that has been used for numerous fisheries investigations in a diverse range of freshwater and marine environments. The main purpose of DIDSON is fish counting, fish sizing, and fish behavioral studies. DIDSON records video-quality data, so processing power for handling the vast amount of data with high speed is a priority. Therefore, a semiautomated analysis of DIDSON data for fish counting, sizing, and fish behavior in Echoview (fisheries acoustic data analysis software) was accomplished using testing data collected on the Rakaia River, New Zealand. Using this data, the methods and algorithms for background noise subtraction, image smoothing, target (fish) detection, and conversion to single targets were precisely illustrated. Verification by visualization identified the resulting targets. As a result, not only fish counts but also fish sizing information such as length, thickness, perimeter, compactness, and orientation were obtained. The alpha-beta fish tracking algorithm was employed to extract the speed, change in depth, and the distributed depth relating to fish behavior. Tail-beat pattern was depicted using the maximum intensity of all beams. This methodology can be used as a template and applied to data from BlueView two-dimensional imaging sonar.

• Fisheries and Aquatic Sciences
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• v.14 no.2
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• pp.73-78
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• 2011

Vibrio parahaemolyticus possesses two flagella systems: polar and lateral flagella for swimming in liquid and swarming on solid surfaces or in viscous environments. To elucidate the pathogenic role of these dual flagella systems, we constructed single- and double-deletion mutants of the lafA and flhAB flagellum genes and investigated their biofilm formation, cell adhesion, and colonization of the small intestine of suckling mice. The double-mutant strain was more impaired in biofilm formation than either of the single-mutant strains. In addition, the lafA, flhAB, and double-mutant strains showed 40%, 45%, and 60%, respectively, lower adherence to HeLa cells than the wild-type strain. Moreover, the lafA, flhAB, and double-mutant strains exhibited 49%, 5.6 and 6.7 times, respectively, lower colonization in a competition assay than the wild-type strain. These findings indicated that polar flagella were more important than lateral flagella for the pathogenesis of V. parahaemolyticus.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.49 no.2
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• pp.224-233
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• 2016

The objective of this study was to develop an artificial neural network (ANN) model for the acoustic identification of commercially important fish species in Korea. A broadband echo acquisition and processing system operating over the frequency range of 85-225 kHz was used to collect and process species-specific, time-frequency feature images from six fish species: black rockfish Sebastes schlegeli, black scraper Thamnaconus modesutus [K], chub mackerel Scomber japonicus, goldeye rockfish Sebastes thompsoni, konoshiro gizzard shad Konosirus punctatus and large yellow croaker Larimichthys crocea. An ANN classifier was developed to identify fish species acoustically on the basis of only 100 dimension time-frequency features extracted by the principal components analysis (PCA). The overall mean identification rate for the six fish species was 88.5%, with individual identification rates of 76.6% for black rockfish, 82.8% for black scraper, 93.8% for chub mackerel, 90.6% for goldeye rockfish, 96.9% for konoshiro gizzard shad and 90.6% for large yellow croaker, respectively. These results demonstrate that individual live fish in well-controlled environments can be identified accurately by the proposed ANN model.

• Fisheries and Aquatic Sciences
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• v.12 no.4
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• pp.265-275
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• 2009

G Protein-coupled receptors (GPCRs) mediating wide ranges of physiological responses is one of the most attractive targets for drug development. Rhodopsin, a dim-light photoreceptor, has been extensively used as a model system for structural and functional study of GPCRs. Fish have rhodopsin finely-tuned to their habitats where the intensity and the wavelength of lights are changed depending on its water-depth. To study the detailed molecular characteristics of GPCR architecture and to understand the fishery light-sensing system, genes encoding rod opsins were isolated from fishes living under different photic environments. Full-length rod opsin genes were obtained by combination of PCR amplification and DNA walking strategy of genomic DNA isolated from olive flounder, P. olivaceus, Japanese eel, A. japonica, and Common carp C. carpio. Deduced amino acid sequences showed a typical feature of rod opsins including the sites for Schiffs base formation (Lys296) and its counter ion (Glu113), disulfide formation (Cys110 and Cys187), and palmitoylation (Cys322 and Cys323) although Cys322 is replaced by Phe in Japanese eel. Comparison of opsins by amino acid sequence alignment indicated the closest similarity between P. olivaceus and H. hippoglossus (94%), A. japonica and A. anguilla (98%), and C. carpio and C. auratus (95%), respectively.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.53 no.4
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• pp.563-565
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• 2020

Turbot Scophthalmus maximus can be cultured at a higher density and has a faster growth rate than olive flounder Paralichthys olivaceus, making it an attractive alternative for flounder farmers in Korea. As it is a relatively new species to Korean farming environments, there is no general farming protocol, which takes multiple generations to develop, for turbot in Korea. Nevertheless, we applied breeding technology to develop a stock, which we considered first-generation turbot. Then we compared its growth rate (an important economic trait) to different populations (the original stock of Korean turbot, French turbot, and Chinese turbot). The four different populations were grown in similar culture conditions. First-generation Korean turbots grew about 28% faster than all others. We will continue to select for important traits such as color, disease resistance, and heat tolerance in this turbot broodstock; we believe that with the appropriate selection process, Korean turbot should become competitive in the markets, and will become a major farming species in the Korean aquaculture industry.