• 생명과학회지
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• 제17권3호통권83호
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• pp.345-349
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• 2007

PDZ 도메인을 통하여 여러 단백질과 상호작용하며 신경전달 기전에 관여하는 단백질로 Shank1, Shank2, Shank3, PDS-95, AF있다. 본 연구는 Shank3 PDZ 도메인의 구조를 밝히기 위한 첫 단계로서 Shank3 단백질의 PDZ 도메인을 동정하였고, E. coli에서 발현하여 생성된 단백질을 정제한 후 1차 NMR 구조분석을 시도하였다. 그 결과에 의하면 정제된 Shank3 PDZ 단백질은 순도가 높고 안정적인 접힘(folding)구조를 제시하고있다. 현재 완전한 NMR 구조분석을 위해 좀더 많은 양의 정제된 Shank3 PDZ 단백질을 얻고자 연구하고 있다.

• Bulletin of the Korean Chemical Society
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• 제31권5호
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• pp.1187-1191
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• 2010

$^1H-^{15}N$ heteronuclear dipolar coupling solid-state NMR experiments on lipid bilayer or bicelle samples are very useful for the structural studies of membrane proteins. However, to study these biological samples using solid-state NMR, a specific probe with high efficiency and high capability is required. In this paper, we describe the optimized design, construction, and efficiency of a 400 MHz wide-bore $^1H-^{15}N$ solid-state NMR probe with 5-mm solenoidal rf coil for high power, multi-pulse sequence experiments, such as 2D PISEMA or 2D SAMMY.

• 한국축산식품학회지
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• 제41권2호
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• pp.312-323
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• 2021

The purpose of this study was to use 1H nuclear magnetic resonance (1H NMR) to quantify taste-active and bioactive compounds in chicken breasts and thighs from Korean native chicken (KNC) [newly developed KNCs (KNC-A, -C, and -D) and commercial KNC-H] and white-semi broiler (WSB) used in Samgye. Further, each breed was differentiated using multivariate analyses, including a machine learning algorithm designed to use metabolic information from each type of chicken obtained using 1H-13C heteronuclear single quantum coherence (2D NMR). Breast meat from KNC-D chickens were superior to those of conventional KNC-H and WSB chickens in terms of both taste-active and bioactive compounds. In the multivariate analysis, meat portions (breast and thigh) and chicken breeds (KNCs and WSB) could be clearly distinguished based on the outcomes of the principal component analysis and partial least square-discriminant analysis (R2=0.945; Q2=0.901). Based on this, we determined the receiver operating characteristic (ROC) curve for each of these components. AUC analysis identified 10 features which could be consistently applied to distinguish between all KNCs and WSB chickens in both breast (0.988) and thigh (1.000) meat without error. Here, both 1H NMR and 2D NMR could successfully quantify various target metabolites which could be used to distinguish between different chicken breeds based on their metabolic profile.

• 미생물학회지
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• 제25권4호
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• pp.304-308
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• 1987

The mode of transglycosylation reaction observed during the action of low-molecular-weight 1,4-$\beta$-D-glucan glucanohydrolase (EC 3.2.1.4) purified from Trichoderma koningii ATCC 26113 was investigated using $^{1}H-NMR $spectroscopy. The H-1 proton resonances were analysed. After reaction of the enzyme with cellotriose, the reaction products were separated by high performance liquid chromatography. H-1 resonances of the products were consisted with those of cellobiose, cellotriose and cellotitraose, respectively. Therefore it was proved that all the reaction products formed by the action of the enzyme on cellooligosaccharides, including transglycosylation products, possess only H-NMR -1,4-glycosidic linkage(s).

• Journal of Applied Biological Chemistry
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• 제64권4호
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• pp.343-349
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• 2021

천궁의 근경을 EeOH 수용액으로 추출하였으며, 얻어진 추출물을 용매계통분획방법을 이용하여 EtOAc 분획, n-BuOH 분획 및 물 분획으로 나누었다. EtOAc 분획과 n-BuOH 분획에 대하여 silica gel, octadecyl silica gel 및 Sephadex LH-20을 정지상으로 사용하여 칼럼크로마토그래피를 반복 수행한 결과 5종의 lipid를 분리하였다. 5종 화합물은 IR, MS 및 NMR 데이터를 해석하여 각각 methyl linoleate (1), linoleic aicd (2) 6-linoleoyl-𝛼-D-glucopyranosyl 𝛽-D-fructofuranoside (3), 1-linolenoyl-3-(𝛼-D-galactopyranosyl (1→6)-𝛽-D-galactopyranosyl) glycerol(4) 및 1-linoleoyl-3-(𝛼-D-galactopyranosyl (1→6)-𝛽-D-galactopyranosyl) glycerol (5)로 구조동정하였다, 화합물 1과 3-5는 천궁에서는 이번 연구에서 처음 분리되었다. 또한 화합물 1과 2의 경우 NMR 데이터가 완전하지 않거나, 문헌에 따라 서로 다르게 보고되어 있으나, 이번에 2-D NMR 등을 자세히 검토하여 모든 탄소 및 수소에 대한 데이터를 확실하게 동정하였다. Sucrose와 지방산 복합체인 화합물 3과 digalactosyl monoglyceride인 화합물 4와 5는 현재까지 천연에서 매우 드물게 보고되어 있다. 보고된 지질화합물들의 면역증강, 항암활성 등을 통해, 천궁 근경의 다양한 약리활성 소재로서의 가능성을 기대할 수 있다.

• Journal of Microbiology and Biotechnology
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• 제18권2호
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• pp.314-321
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• 2008

Acaricidal effects of materials derived from Diospyros kaki roots against Dermatophagoides farinae and D. pteronyssinus were assessed using impregnated fabric disk bioassay and compared with that of the commercial benzyl benzoate. The observed responses varied according to dosage and mite species. The $LD_{50}$ values of the chloroform extract of Diospyros kaki roots were 1.66 and $0.96{\mu}g/cm^2$ against D. farinae and D. pteronyssinus. The chloroform extract of Diospyros kaki roots was approximately 15.2 more toxic than benzyl benzoate against D. farinae, and 7.6 times more toxic against D. pteronyssinus. Purification of the biologically active constituent from D. kaki roots was done by using silica gel chromatography and high-performance liquid chromatography. The structure of the acaricidal component was analyzed by GC-MS, $^1H-NMR,\;^{13}C-NMR,\;^1H-^{13}C$ COSY-NMR, and DEPT-NMR spectra, and identified as plumbagin. The acaricidal activity of plumbagin and its derivatives (naphthazarin, dichlon, 2,3-dibromo-1,4-naphthoquinone, and 2-bromo-1,4-naphthoquinone) was examined. On the basis of $LD_{50}$ values, the most toxic compound against D. farinae was naphthazarin $(0.011{\mu}g/cm^2)$ followed by plumbagin $(0.019{\mu}g/cm^2),$ 2-bromo-1,4-naphthoquinone $(0.079{\mu}g/cm^2)$, dichlon $(0.422{\mu}g/cm^2)$, and benzyl benzoate $(9.14{\mu}g/cm^2)$. Additionally, the skin color of the dust mites was changed from colorless-transparent to dark brown-black by the treatment of plumbagin. Similar results have been exhibited in its derivatives (naphthazarin, dichlon, and 2-bromo-1,4-naphthoquinone). In contrast, little or no discoloration was observed for benzyl benzoate. From this point of view, plumbagin and its derivatives can be very useful for the potential control agents, lead compounds, and indicator of house dust mites.

• Bulletin of the Korean Chemical Society
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• 제19권5호
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• pp.519-524
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• 1998

In this work, we applied the 1D 11B nutation NMR method for the analysis of the local structural environments in powdered borosilicates (SiO2-B2O3). Spin dynamics during a rf irradiation for spin I=3/2 was analytically calculated with a density matrix formalism. Spectral simulation programs were written in MATLAB on a PC. Two borosilicates prepared by the sol-gel process at different stabilization temperature were used for the 1D 11B nutation NMR experiment. The 11B NMR parameters, quadrupole coupling constants (e2qQ/h) and asymmetry parameters (η), for each borosilicate were extracted from the nonlinear least-squares fitting. The effects of heat treatments on the local structures of boron sites in borosilicates were discussed.

• 생약학회지
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• 제31권1호
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• pp.34-38
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• 2000

Three compounds were isolated from the roots of Astragalus membranaceus (Leguminosae). On the basis of spectroscopic evidences, the structures were characterized as $3-0-{\beta}-D-xylopyranosyl-(2',3'-O-diacetyl)-6-0-{\beta}-D-glucopyranosyl-3{\beta},6{\alpha},16{\beta},25-tetrahydroxy-20(R)$,24(S)-epoxy-cycloartane(Astragaloside I), $3-0-{\beta}-D-xylopyranosyl-(2'-O-acetyl)-6-0-{\beta}-D-glucopyranosyl-3{\beta},6{\alpha},16{\beta},25-tetrahydroxy-20(R)$,24(S)-epoxy-cycloartane(Astragaloside II), $3-0-{\beta}-D-xylopyranosyl-(2',4'-O-diacetyl)-6-0-{\beta}-D-glucopyranosyl-3{\beta},6{\alpha},16{\beta},25-tetrahydroxy-20(R)$,24(S)-epoxycycloartane(Isoastragaloside I). Full data of NMR including HMBC and 1D-TOCSY experiment of these compounds were reported for the first time.

• 한국광물학회지
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• 제22권4호
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• pp.343-352
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• 2009

특정 원자 중심의 정보를 제공해주는 고분해능 고상핵자기 공명 분광분석(NMR)은 현무암질 마그마를 포함한 대부분의 자연계의 다성분계 규산염 용융체의 원자 구조 분석에 적합하다. 본 연구에서는 일차원과 이차원 고상 NMR을 이용하여 현무암질 마그마의 모델 시스템인 CMAS (CaO-MgO-$Al_2O_3-SiO_2$) 비정질 규산염의 조성에 따른 원자 구조의 변화를 규명하였다. $^{27}Al$ MAS NMR 실험 결과 모든 조성에대해 $^{[4]}Al$ 피크가 지배적으로 나타나고 이는 $Al^{3+}$이 네트워크 형성 이온으로 작용한다는 것을 지시한다. $X_{MgO}$가 증가함에 따라 피크 위치가 음의 방향으로 4.7 ppm 이동하며 이는 조성에서 Si의 상대적인 양이 증가할수록 $Q^4$(4Si)가 증가하는 것을 의미하고 이를 통해 Al 주변의 산소가 모두 연결 산소(BO, bridging oxygen)임이 확인되었다. $^{17}O$ NMR 실험 결과 비정질 $CaMgSi_2O_6$에 있는 비연결 산소의 상대적 양이 $CaAl_2SiO_6$에 있는 비연결 산소보다 정성적으로 많은 것이 확인되었다. 모델 사성분계 비정질 알루미노규산염에 대한 $^{17}O$ 3QMAS NMR 실험결과 Al-O-Al, Al-O-Si, Si-O-Si의 연결 산소와 {Ca, Mg}-NBO의 원자 환경이 구별되며 이 실험 결과는 자연계에서 나타나는 다양한 조성의 다성분계 비정질에 대해서도 이차원 3QMAS NMR 실험을 이용하여 원자구조를 규명할 수 있는 가능성을 제시한다.

• 한국자기공명학회논문지
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• 제7권2호
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• pp.89-97
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• 2003

Foot-and-mouth disease virus (FMDV) belongs to the aphthovirus genus within the picornavirus which has a single copy of a positive sense RNA. The translation initiation process of FMDV occurs by a cap-independent mechanism directed by a highly structured element (∼435 nt) termed an internal ribosome entry site (IRES). We have designed and prepared FMDV 4-2 RNA (28nt) by in vitro transcription. The 2D NMR data revealed that FMDV 4-2 IRES domain RNA has a flexible loop and bulge conformation. In further study, we need to make an isotope labeled RNA sample and conduct 3D NMR experiments to completely determine the 3D structure. This study may establish a new drug design strategy to treat foot-and mouth disease.