• Proceedings of the Plant Resources Society of Korea Conference
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• 2018.10a
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• pp.125-125
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• 2018

고추는 우리나라에서 가장 중요한 채소 작물이다. 최근에는 소비자 기호의 변화, 기능성 물질에 대한 수요의 증대에 따라 신품종 개발을 위한 다양한 유전자원의 수집이 점차적으로 중요해지고 있다. 특히, 유전자원을 활용하여 고기능성 물질 함유 품종 등 차별화된 신품종 개발을 할 필요가 있다. 본 과제의 주요 연구내용은 고추에서 매운맛을 내는 Capsaicin, Dihydrocapsaicin의 함량을 분석하여 매운맛이 우수한 유전자원을 선발하였다. 시험재료로 사용된 고추 유전자원의 종은 Capsicum annuum 375점, C. baccatum 7점, C. chinense 29점, C. frutescens 6점, C. sp. 46점으로 구성되었다. 분석된 고추 유전자원의 원산지는 43개국이며, 중국 원산 자원이 132점으로 가장 많이 분포하였고 원산지 미상 자원은 38점이었다. 대조품종으로 청양, 독야청청, 오로벨을 사용하였다. Capsaicin의 함량은 0~680 mg/100g/DW로 분포하였고, 매운맛 대조품종으로 쓰인 청양이 221.85 mg/100g/DW이었으며 분석된 고추 유전자원 중에 청양보다 높은 자원은 62자원이었다. Dihydrocapsaicin의 함량은 0 ~ 415mg/100g/DW로 분포하였고, 대조품종으로 쓰인 청양이 50.14 mg/100g/DW 이었으며 분석된 고추 유전자원 중에 청양보다 높은 자원은 197자원이었다.

• Journal of Life Science
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• v.16 no.6
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• pp.898-903
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• 2006

The genetic diversity and population structure of fifteen Potentilla discolor Bunge populations in Korea were determined using genetic variations at 19 allozyme loci. Fourteen of the 19 loci (73.7%) showed detectable polymorphism. Genetic diversity at the species level and at the population level was high ($H_{ES}\;=\;0.215$, $H_{EP}\;=\;0.196$, respectively), whereas the extent of the population divergence was relatively low $(G_{ST}\;=\;0.069)$. Total genetic diversity values $(H_T)$ varied between 0.0 and 0.656, giving an average overall polymorphic loci of 0.292. The interlocus variation of genetic diversity within populations $(H_S)$ was high (0.274). On a per locus basis, the proportion of total genetic variation due to differences among populations $(G_{ST})$ ranged from 0.010 for Pgm-2 to 0.261 for Pgd-2 with a mean of 0.069, indicating that about 6.9% of the total allozyme variation was among populations. Wide geographic ranges, perennial herbaceous nature and the persistence of multiple generations are associated with the high level of genetic variation in P. discolor. The estimate of gene flow based on $G_{ST}$ was high among Korean populations of P. discolor (Nm = 3.36).

• Journal of Scientific & Technological Knowledge Infrastructure
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• s.10
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• pp.60-63
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• 2002

20세기초 시작된 실험동물분야는 다른 분야에 비해 뒤늦게 시작된 분야임에도 불구하고 생명해석과 의학의 발전과 더불어 급격히 발전한 분야라 할 수 있다. 특히, 1950년대 오염되지 않은 다양한 청정동물의 개발, 1970-80년대의 다양한 질환모델동물의 개발에 이어, 분자생물학의 발전과 더불어 1990년대를 거쳐 21세기의 다양한 유전자도입동물가 개발되고 있다. 이는 자연계에 존재하는 생물자원만이 아닌, 유전자조작으로 다양하게 개발되는 새로운 생물자원을 포함하므로, 그 다양성의 가치와 정보의 집대성은 대단히 중요한 일이며, 유전자연구의 한축이 되고있는 bioinformatic 분야에서도 많은 부분 할애되고 있다고 해도 과언이 아닐 것이다.

• Korean Journal of Breeding Science
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• v.43 no.4
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• pp.322-329
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• 2011

Microsatellite markers were utilized to investigate genetic diversity among 70 Korean barley varieties (Hordeum vulgare). Ninety nine microsatellite primer pairs were screened for 9 varieties. Twenty primer pairs showed highly polymorphic. The relationship between markers genotypes and 70 varieties was analyzed. A total of 124 polymorphic amplified fragments were obtained by using 20 microsatellite markers. Two to nine SSR alleles were detected for each locus with an average of 6.2 alleles per locus. Average polymorphism information content (PIC) was 0.734, ranging from 0.498 to 0.882. A total of 124 marker loci were used to calculate Jaccard's distance coefficients for cluster analysis using UPGMA. Clustering group was divided 2 groups corresponding to 2-rowed and 6-rowed barley varieties. The phenogram was discriminated all varieties by markers genotypes. These markers may be used wide range of practical application in variety identification and genetic purity assessment of barley.

• Electronics and Telecommunications Trends
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• v.32 no.1
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• pp.116-122
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• 2017

유전체 분석을 위한 시퀀싱 기술의 발전으로 유전체 데이터량이 폭발적으로 증가하고 있다. 저장 및 관리 비용 절감을 위해 유전체 데이터 압축 기술이 연구되고 있지만, 국제 표준의 부재로 다양한 포맷들이 사용되고 있다. 최근, MPEG에서 유전체 데이터의 압축 및 저장 표준에 대한 필요성을 받아들여 표준화 작업이 진행 중이다. 본고에서는 유전체 분석의 기본이 되는 염기서열의 분석 과정을 소개하고, 유전체 데이터 압축 및 저장 기술의 표준화 동향에 대해서 살펴보고자 한다.

• Journal of the Korean Institute of Intelligent Systems
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• v.10 no.5
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• pp.432-441
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• 2000

This paper deals with the fuzzy modeling for the complex and uncertain nonlinear systems, in which conventional and mathematical models may fail to give satisfactory results. Genetic algorithm has been used to identifY parameters and structure of fuzzy model because it has the ability to search optimal solution somewhat globally. The genetic algorithm, however, has a problem, which optimization process can be premature convergence in the case of lack of genetic divergence of population. Virus- evolutionary genetic algorithm(VEGA) could be a strategy against this local convergence. Therefore, we use VEGA for fuzzy modeling. In this method, local information is exchanged in population so that population can sustain genetic divergence. finally, to prove the theoretical hypothesis, we provide numerical examples to evaluate the feasibility and generality of fuzzy modeling using VEGA.

• Journal of The Korean Society of Inherited Metabolic disease
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• v.23 no.2
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• pp.1-7
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• 2023

Inherited metabolic disorders (IMD) are a group of disorders involving various metabolic pathways. Genetic diagnosis of IMD has been challenging because of extremely heterogeneous nature and extensive laboratory and/or phenotype overlap. Conventional genetic diagnosis was a gene-by-gene approach that needs a priori information on the causative genes that might underlie the IMD. Recent implementation of next-generation sequencing (NGS) technologies has changed the process of genetic diagnosis from a gene-by-gene approach to simultaneous analysis of targeted genes possibly associated with the IMD using gene panels or using whole exome/genome sequencing (WES/WGS) covering entire human genes. Clinical NGS tests can be a cost-effective approach for the rapid diagnosis of IMD with genetic heterogeneity and are becoming standard diagnostic procedures.

• The Journal of Engineering Geology
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• v.13 no.4
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• pp.405-418
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• 2003

Measurements of volumetric water content and saturation of porous media are very important factors in understanding the physical characteristics of soil, groundwater recharge by rainfall, pollutant movement, and slope failure. To measure such physical parameters, a permittivity method using electromagnetic wave is applied and use is made of the special permittivity response of understand to water and ethanol. In particular, the estimation is required because permittivity is influenced by the nature of the underground environment. In this study, we carried out experiments on the relative dependency of soil density, temperature and salinity of standard sand and granitic weathered soil using FDR-V system (Frequency domain reflectometry with vector network analyzer) within a frequency range of 1 - 18 GHz. The results of the study showed that the dielectric constants of standard sand and granitic weathered soil increased with increased volumetric water content of soil. However, the dependency of soil density was found to be a little low. Changes of dielectric constant with temperature appeared definitely in the real part of 1 GHz. That is, the dielectric constant of real part at 1 GHz of water and standard sand increased with the rise of temperature. However, ethanol showed decreased tendency. The study also showed that dielectric constant increased with increase in salinity at imaginary part of 1 GHz. It could be concluded from this study FDR-V system can adequately measure the physical properties of soil and the degree of salinity concentration of porous media within 1 GHz frequency range using dielectric constant.

• Journal of Korean Society of Forest Science
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• v.103 no.1
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• pp.51-58
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• 2014

Genetic diversity and genetic structures were estimated in seven natural populations of Phellodendron amurense Rupr in South Korea using ISSR markers. The average of polymorphic loci per primer and the proportion of polymorphic loci per population were 4.5 and 78.8% respectively with total 27 polymorphic loci from 6 ISSR primers. The Shannon's diversity index(I) was 0.421 and the expected heterozygosity($H_e$) was 0.285, which was similar to the heterozygosity (hs =0.287) inferred by Bayesian method. In AMOVA, 7.6% of total genetic variation in the populations was resulted from the genetic difference among populations and the other 92.4% was resulted from the difference among individuals within populations. Genetic differentiation(${\theta}^{II}$) and inbreeding coefficient(f) for total population were estimated to be 0.066 and 0.479 by Bayesian method respectively. In Bayesian clustering analysis, seven populations were assigned into three groups. This result was similar to the results of genetic relationships by UPGMA and PCA. The first group included Hwachoen, Gapyeong, Bongpyeong and Yongpyeong population, and the second included two populations in Sancheong region. Muju population was discretely assigned into the third group in spite of the geographically short distance from the Sancheong region. There was no significant correlation between genetic relationship and geographic distribution among populations in Mantel's test. For conservation of the phellodendron trees, it would be effective to consider the findings resulted from this study with ecological traits and life histories of this species.

• Journal of Life Science
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• v.25 no.12
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• pp.1347-1353
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• 2015

The fleshy shrimp, Fenneropenaeus chinensis, is the family of Penaeidae and one of the most economically important marine culture species in Korea. However, its genetic characteristics have never been studied. In this study, a total of 240 wild F. chinensis individuals were collected from four locations as follows: Narodo (NRD, n = 60), Beopseongpo (BSP, n = 60), Chaesukpo (CSP, n = 60), and Cheonsuman (CSM, n = 60). Genetic variability and the relationships among four wild F. chinensis populations were analyzed using 13 newly developed microsatellite loci. Relatively high levels of genetic variability (mean allelic richness = 16.87; mean heterozygosity = 0.845) were found among localities. Among the 52 population loci, 13 showed significant deviation from the Hardy–Weinberg equilibrium. Neighbor-joining, principal coordinate, and molecular variance analyses revealed the presence of three subpopulations (NRD, CSM, BSP and CSP), which was consistent with clustering based on genetic distance. The mean observed heterozygosity values of the NRD, CSM, BSP, and CSP populations were 0.724, 0.821, 0.814, and 0.785 over all loci, respectively. These genetic variability and differentiation results of the four wild populations can be applied for future genetic improvement using selective breeding and to design suitable management guidelines for Korean F. chinensis culture.