• Journal of Food Hygiene and Safety
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• v.35 no.6
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• pp.521-534
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• 2020

Paralytic shellfish poisoning (PSP) occurs when saxitoxin (STX), which is produced by harmful algae (dinoflagellates) and then accumulated in bivalve shellfish by filter-feeding, is consumed by humans. With recent advances in analysis technology, it has been reported that dinoflagellates also produce a variety of analogues such as the gonyautoxin (GTX) group and the N-sulfo-carbamoyl toxin (C toxin) group, in addition to STX. Accordingly, CODEX and the EFSA are stepping forward to manage STX and analogues as STX groups requiring safety management. In Korea, the occurrence of dinoflagellates producing STX analogues has already been reported, and contamination of analogues (GTX group, C toxin group) in live mussels has also been reported. In this study, in order to provide the basis for systematic monitoring and safety management of STX and analogues, their physicochemical characteristics, occurrence of dinoflagellates, toxicity and toxic equivalency factor, analytical method and occurrence were widely reviewed. This review is expected to contribute to strengthening the safety management of STX and its analogues.

• Proceedings of the Korea Information Processing Society Conference
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• 2012.11a
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• pp.1326-1329
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• 2012

전사체(transcript)는 유전자로부터 전사된 DNA 시퀀스 코드를 말한다. 전사체(transcript)의 발현된 형태에 따라 생성되는 단백질의 형태 역시 달라지므로 전사체 모델의 형태는 중요한 의미를 가지며 특정 위치의 전사체가 정상과 다르게 모델이 변할 경우 심각한 경우에는 유전자 질병에 노출될 수 있다. 현재 실험체에 대한 전사체 모형은 SpliceGrapher, Cufflinks와 같은 상용화된 도구들을 사용하여 얻을 수 있다. 하지만 이런 도구 간의 결과 값 및 어노테이션 정보와 결과 값 간의 유사도 비교를 위한 방법론은 현재 알려진 바 없다. 대신 전사체 비교를 위해 모형 간의 차이를 눈으로 하나씩 비교하거나 전사체 위치를 이용한 산수 값을 이용한다. 본 논문에서는 전사체 모형 간의 유사도를 비교하기 위한 방법론을 제시하고 Homo sapiens grch37 어노테이션 파일과 SRR387514 실험 데이터 간의 유사도를 제시한 방법론을 이용하여 측정한 결과 값을 분석하였다.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2004.09a
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• pp.406-409
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• 2004

최근 Lee et al.$^{l-2)}$ 은 화강암질 편마암내 균열면의 방해석이 Eu의 변화에 큰 영향을 주며, 아울러 Eu 은 Am의 유사체로서 매우 적합한 원소라고 제안하였다. 이 논문에서는 1)희토류원소와 액티나이드 원소의 이온반경, 배위수 등의 상호비교와 2) 응집력(cohesive energy)의 유사성과 물리적/화학적 특성 그리고 3) 희토류원소 지구화학의 최근 연구결과를 토대로 하여, 고준위 방사성 핵종원소인 Am의 지질매체내 거동을 예측하기 위한 유사체(analog)로서 Eu이 매우 유용한 역할을 해준다는 가설2)을 검증한 결과를 보고하고자 한다. 연구방법으로서, 핵종원소의 지질매체별 흡착특성을 밝혀내기 위해 금번 실험에서는 희토류원소 암상별 분포의 특성을 고려하여 4종류(화강암질 편마암류 2종, meta-basalts, 응회암)의 시료를 선별하였다. 방사화학적 흡탈착 실험의 핵종동위원소로서는 152Eu와 241Am을 선택하였다. 이는 본 연구팀의 연구결과, Eu과 Am의 밀접한 물리적/화학적 상관관계 그리고 지질환경내에서의 거동특성을 고려한 것이다. 실험결과 양 동위원소의 지질매체와의 흡착 반응 특성을 비교해 볼 때, 시간의 경과에 따라 서로간에 매우 유사한 양상의 증감을 보여주면서 변화함을 알 수가 있었다. 이 결과는 희토류원소가 액티나이드 원소의 지질환경내 거동예측을 위한 유사체로서 매우 훌륭한 도구라는 것을 입증해 주는 것이라 할 수 있다.

• Journal of the Korean Chemical Society
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• v.43 no.6
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• pp.676-681
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• 1999

Itraconazole is an important drug for oral treatment of histoplasmosis and blastomycosis. ltraconazole has been the targets of many synthetic efforts due to their diverse antifungal activities. ln this study, an efficient synthetic route for Itraconazole intermediates has been developed using new procedures. Also, ltraconazole analogues introducing 2- and 3-methoxy group instead of ltraconazole intermediates with 4-methoxy group were synthesized.

• Korean Journal of Veterinary Research
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• v.32 no.3
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• pp.365-368
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• 1992

1988년부터 1990년 6월까지 전국의 양돈장에서 수집된 돼지 유사산 태아 74복에서 바이러스성 원인체 분리 및 혈청학적 진단을 수행하였던 바 다음과 같은 결과를 얻었다. 공시한 74복의 유사산 태아중 44복의 태아 흉강액에서 면역 globulin이 검출되어 전염성 질병감염에 의한 유사산으로 추정되었다. 이중 37%가 바이러스성 유사산으로 나타났으며 유사산의 원인체별 분포를 살펴보면 돼지 파보바이러스가 21%로 가장 높았으며, 뇌심근염 바이러스가 11%, 일본뇌염 바이러스가 9% 등의 순으로 나타났다. 한편 돼지 콜레라바이러스 및 오제스키병 바이러스에 의한 유사산이 각각 1건씩 검출되었으며 동일 유사산 태아에서 2가지 병원체가 중복감염된 예도 관찰되었다.

• Journal of the Korean Chemical Society
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• v.45 no.4
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• pp.312-317
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• 2001

7'-Aldehyde-nucleosides analogue (2a, 2c) were synthesized from 6-N-benzoyl-2',3'-O-isopropylideneadenosine and uridine. The condensation of 2 with ethoxycarbonylmethylene Wittig reagent produced the adenosine and uridine analogues containing extended conjugated diene and ethoxycarbonyl group, ethyl-1',5',6',7',8'-pentadeoxy-1'-(adenin-9-yl)-$\beta$-D-ribo-nona-5'(E),7'(E)-dienofuranuronate (4b) and ethyl-1'. 5',6',7',8'-pentadeoxy-1'-(uracil-1-yl)-$\beta$-D-ribo-nona-5'(E),7'-(E)-dienofuranuronate (4c). 9-[8',8'-dibromo-5',6',7',8' -tetradeoxy-$\beta$-D-ribo-octa-5'(E),7'(E)-diene]nucleosides (6b, 6c) were also prepared from 2 with similar method.

• Microbiology and Biotechnology Letters
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• v.40 no.4
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• pp.409-413
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• 2012

Indolicidin (ID) is a 13-residue Trp-rich antimicrobial peptide (AMP) isolated from bovine neutrophils. In addition to having a high antimicrobial potency, it is also toxic to mammalian cells. To develop novel ID-derived AMPs with shorter lengths and enhanced prokaryotic selectivities (meaning potent antimicrobial activity against bacterial cells without toxicity against mammalian cells) over the parental ID, several ID analogs were designed and synthesized. Finally, 10-residue ID analogs (SI, SI-PA, SI-WF and SI-WL) with much higher prokaryotic selectivity than the parental ID were developed. Our results suggest that the hydrophobic and aromatic amino acids at the central position of the analog SI with the highest prokaryotic selectivity are important for potent antimicrobial activity, but two Pro residues do not affect antimicrobial activity. The order of prokaryotic selectivity for ID and its designed analogs was SI > SI-PA > SI-WF > SI-WL > ID > SI-WA. Taken together, our designed short ID analogs could be developed as therapeutic agents for treating bacterial infections.

• KIISE Transactions on Computing Practices
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• v.23 no.4
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• pp.250-255
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• 2017

Given the explosion of genomic data and expansion of applications such as precision medicine, the importance of efficient genome-database management continues to grow. Traditional compression techniques may be effective in reducing the size of a database, but a new challenge follows in terms of performing operations such as comparison and searches on the compressed database. Based on that many genome databases typically have numerous duplicated or similar sequences, and that the runtime of genome analyses is normally proportional to the number of sequences in a database, we propose a technique that can compress a genome database by eliminating similar entries from the database. Through our experiments, we show that we can remove approximately 84% of sequences with 1% similarity threshold, accelerating the downstream classification tasks by approximately 10 times. We also confirm that our compression method does not significantly affect the accuracy of taxonomy diversity assessments or classification.

• Journal of the Korean Chemical Society
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• v.38 no.10
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• pp.763-768
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• 1994

As a part of synthetic programs aimed at Dolastatin 10 analogues, synthetic pathway toward various peptides were investigated. 4-Amino-3-hydr> Transfer interrupted!nalogues were prepared by ring opening of epoxides with ammonia in MeOH. Several peptides were prepared starting from these unusual amino acids through using mainly DCC coupling.

• Journal of the Korean Chemical Society
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• v.37 no.4
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• pp.448-452
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• 1993

To find out a correlation between anti-folate activity and physical properties of folate analogues, geometric parameters, dipole moment, net charges, HOMO and LUMO energies were calculated. The electronic properties do not give any correlations with inhibition of folate reductase, but the calculated geometries show some correlations.