• Proceedings of the Korean Vacuum Society Conference
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• 2016.02a
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• pp.203.2-203.2
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• 2016

미생물이 스스로 생성한 고분자 물질에 싸이며 군집체를 형성한 바이오필름은 고체 표면에 부착되며 우리 생활 속에 다양한 형태로 발견할 수 있다. 바이오필름은 미생물에 적합하지 않은 외부 환경으로부터 미생물 스스로 보호하는 기능을 하며, 형성된 바이오필름은 오랜 기간 동안 생존하여 살균제나 항생제로부터 저항성을 가져 살균과정에서 제거되지 않고 2차오염을 야기할 수 있어 식품 가공 기계 및 수도관, 의료기기 등에 형성되었을 경우 식품 오염, 상처 감염 등의 원인이 된다. 이 때문에 위생과 바이오필름의 상관관계를 인지하고 이를 제어하기 위한 연구가 여러 방법으로 진행되고 있다. 대표적인 방법으로는 천연 향균제 개발, 쿼럼 센싱(Quoroum sensing)과 같이 미생물의 신호전달 체계를 차단하는 물질 개발 및 플라즈마 처리 등이 있다. 본 연구에서는 격자형식의 유전장벽방전(DBD) 형식의 플라즈마 소스를 개발하여 바이오필름의 효과적인 제어 가능성을 확인하고, 제어 방식의 관계를 파악하였다. 플라즈마 처리 대상의 화학적 분석을 위하여 유기물질 등을 사용해 플라즈마 처리수 내 화학물질 분석 시스템을 구축하여 이를 기반으로 플라즈마로 생성된 HNO2, NO2-, H2O2 등의 화학종이 가지는 바이오필름 제어 관계를 살펴보았으며, 화학적 방법인 제어효과와 비교하여 플라즈마의 바이오필름 제어 특성에 대해 살펴보았다. 본 발표에서 플라즈마의 바이오필름 제어효과에 대한 분석에 대해 더 자세한 결과가 발표될 예정이다.

• Korean Journal of Microbiology
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• v.46 no.4
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• pp.352-358
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• 2010

Bacterial community composition in activated sludge wastewater treatment bioreactors were analyzed using 16S rRNA gene-based pyrosequencing for the four different wastewater treatment processes. Sequences within the orders Rhodocyclales, Burkholderiales, Sphingobacteriales, Myxococcales, Xanthomonadales, Acidobacteria group 4, Anaerolineales, Methylococcales, Nitrospirales, and Planctomycetales constituted 54-68% of total sequences retrieved in the activated sludge samples, which demonstrated that a few taxa constituted majority of the activated sludge bacterial community. The relative ratio of the order members was different for each treatment process, which was assumed to be affected by different operational and environmental conditions of each treatment process. In addition, activated sludge had very diverse bacterial species (Chao1 richness estimate: 1,374-2,902 operational taxonomic units), and the diversity was mainly originated from rare species. Particularly, the bacterial diversity was higher in membrane bioreactor than conventional treatment processes, and the long solids retention time of the operational strategy of the membrane bioreactor appeared to be appropriate for sustaining diverse slow growing bacteria. This study investigating bacterial communities in different activated sludge processes using a high-throughput pyrosequencing technology would be helpful for understanding microbial ecology in activated sludge and for improving wastewater treatment in the future.

• Microbiology and Biotechnology Letters
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• v.47 no.3
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• pp.354-358
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• 2019

In order to evaluate the migration of fungi into doenjang from its materials, meju and solar salt, microbial communities were analyzed using pyrosequencing. Dominant fungi of meju were Botrytis spp. (57.94%) and Dothiorella samentorum (24.08%). Unidentified fungal species (37.53%), unassigned species (32.60%) and several fungal species of small portion were identified in solar salt. In doenjang, Candida versatilis were predominantly detected (92.62%). Non-halophilic mold were dominantly identified from meju (low-salt fermented soybean), while halophilic bacteria and archaea for solar salt and salt-tolerance fungi such as C. versatilis for doenjang (high-salt fermented soybean) were frequently detected. These results implied that most predominant fungal species might not be migrated from meju and/or solar salt into doenjang.

• Korean Journal of Microbiology
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• v.46 no.4
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• pp.366-374
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• 2010

Culture-dependent RFLP and culture-independent DGGE were employed to investigate the bacterial community associated with the marine sponge Spirastrella abata. A total of 164 bacterial strains associated with the sponge were cultivated using Zobell and Natural sea salt media. PCR amplicons of the 16S rDNA from the bacterial strains were digested with the restriction enzymes HaeIII and MspI, and then assigned into different groups according to their restriction patterns. The 16S rDNA sequences derived from RFLP patterns showed more than 95% similarities compared with known bacterial species, and the isolates belonged to four phyla, Proteobacteria (Alphaproteobacteria, Gammaproteobacteria), Actinobacteria, Firmicutes, and Bacteriodetes, of which Alphaproteobacteria was dominant. DGGE fingerprinting of 16S rDNAs amplified from the sponge- derived total gDNA showed five major DGGE bands, and their sequences showed more than 96% similarities compared with available sequences. The sequences derived from DGGE bands revealed high similarity with the uncultured bacterial clones. DGGE revealed that bacterial community consisted of four phyla, including Proteobacteria (Alphaproteobacteria, Gammaproteobacteria), Actinobacteria, Spirochetes, and Chloroflexi. Alphaproteobacteria, Gammaproteobacteria, and Actinobacteria were commonly found in bacteria associated with S. abata by both RFLP and DGGE methods; however, overall bacterial community in the sponge differed depending on the analysis methods.

• Microbiology and Biotechnology Letters
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• v.42 no.1
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• pp.41-50
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• 2014

In this study, the performances of PVA-encapsulation and non-encapsulation in a fed-batch bioreactor system were compared for biohydrogen production. Hydrogen production in the PVA-encapsulation bioreactor was not significantly different in comparison to the non-encapsulation bioreactor. However, the hydrogen gas in the encapsulation bioreactor could be stably produced when it was exposed to environmental difficulties such as pH impact by the accumulation of organic acids as fermentative metabolic products. Bacterial communities by DGGE analysis were differently shifted between the PVA-encapsulation and non-encapsulation bioreactors from the initial sludge. The community of hydrogen producing bacteria was stable during the experimental period in the PVA-encapsulation bioreactor compared to the non-encapsulation method. The absolute quantitation of the DNA copy number by a high-throughput droplet digital PCR system for six genera contributed to hydrogen production showing that the numbers of dominant bacteria existed at similar levels in the two bioreactors regardless of encapsulation. In both of two bioreactors, not only Clostridium and Enterobacter, which are known as anaerobic hydrogen producing bacteria, but also Firmicutes, Ruminococcus and Escherichia existed with $1{\times}10^5-1{\times}10^6$ copy numbers of ml-samples exhibiting rapid growth during the initial operation period.

• Journal of Mushroom
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• v.22 no.2
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• pp.67-72
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• 2024

In this study, we investigated the microbial community of oyster mushrooms at different growth stages at the species level. Gram-positive bacteria were predominant in the presterilized medium. On the other hand, Gram-negative bacteria were predominant in the culture-completed medium, post-harvest medium, and fruiting bodies. In addition, Pseudomonas tolaasii, which is known to cause disease in mushrooms, was confirmed in the cultured medium, post-harvest medium, and fruiting bodies, and it was determined that the mycelium culture stage was contaminated, and the reason why no disease occurred was Sphingobacterium psychroaquaticum. It was confirmed that this was because the growth of Pseudomonas tolaasii was suppressed by producing a component called tolacin. As a result of confirming the diversity of microorganisms, it was confirmed that the presterilization medium contains a variety of microorganisms compared to other growth stages, and the diversity decreases in the order of culture completion medium, fruiting body, and post-harvest medium. showed a trend. As a result of microbial similarity analysis, it was confirmed that the cultured medium and the post-harvest medium showed similar microbial communities, and in the case of fruiting bodies, there were some similarities but overall differences.

• KSBB Journal
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• v.20 no.6
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• pp.431-437
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• 2005

Molecular methods were employed to investigate microorganisms in a thermophilic continuous stirred tank reactor(CSTR) used for continuous $H_2$ production. The reactor was inoculated with heat-treated anaerobic sludge and fed with a glucose-based medium. Denaturing gradient gel electrophoresis showed dynamic changes of bacterial populations in the reactor during 43 days of operation. Gas composition was constant from approximately 14 days but population shift still occurred. Populations affiliated with Fervidobactrium gondwanens and Thermoanaerobacterium thermosaccharolyticum were dominant on 21 and 41 days, respectively. Keeping pH of the medium at 5.0 could suppress methanogenic activity that was detected during initial operation period. $CH_4$ and mcrA detected in the samples obtained from the reactor or inoculum suggested the heat treatment condition employed in this study is not enough to remove methanogens in the inoculum. PCR using primer sets specific to 4 main orders of methanogens suggested that major $H_2$-consuming methanogens in the CSTR belong to the order Methanobacteriales.

• Proceedings of the Korean Society of Organic Agriculture Conference
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• 2009.12a
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• pp.309-309
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• 2009

국내외 환경문제와 관련하여 농업환경보전 및 안전한 먹거리에 대한 소비자의 요구가 커지면서 친환경농업에 대한 관심이 높이지고 있다. 친환경농업은 화학비료와 농약의 사용을 양분종합관리 및 병해충종합관리등을 통해 저투입하는 농법과 화학비료와 농약의 대체 농자재를 사용하는 유기농법으로 나누어져 있다. 대체 농자재는 목초액, 키토산 등 시판되는 자재를 비롯하여 천혜녹즙, 한방영양제, 아미노산액비 등과 같이 농가를 중심으로 자가 제조되어 활용되고 있는 것이 특징이다. 그러나 대부분 효능이 제대로 검증되지 않고 임의로 사용되고 있기 때문에 본 연구는 농가 자가제조 유기농액비의 미생물학적 특성을 구명하여 유기농 액비의 농업적 활용 제고를 위한 표준화를 확립하기 위해 수행하였다. 농가자가 제조 유기농액비는 성환과 제주에서 5점을 수집하여 액비의 화학성과 미생물상을 비교하였다. 액비 제조시 종균으로 사용되고 있는 부엽토를 5지역에서 채취하여 세균군집의 차이를 보기위해 denaturing gradient gel electrophoresis (DGGE)를 수행하여 분석하였다. 주요 결과를 요약하면 수집된 액비의 화학성 분석결과, pH는 3.3~4.3로 강한 산성을 나타났으며 EC는 $32.8dS{\cdot}m^{-1}{\sim}552.33dS{\cdot}m^{-1}$ 이었다. 수집된 액비내 미생물상을 조사한 결과, 세균과 방선균은 존재하였지만 사상균은 검출되지 않았다 또한 성환에서 수집된 액비로부터 세균을 분리하여 16S rRNA 염기서열을 분석한 결과, 대부분 Bacillus속으로 95%이상의 높은 유사성을 갖는 것으로 나타났다. 액비 발효 시 종균으로 사용되고 있는 부엽토의 미생물상을 조사한 결과, 지역에 따라 세균은 0.8~$110{\times}10^5cfu{\cdot}g^{-1}$, 방선균은 1.0~$10.9{\times}10^4cfu{\cdot}g^{-1}$, 그리고 사상균은 2.6~$64{\times}10^3cfu{\cdot}g^{-1}$의 균수를 보였다. 부엽토간의 세균군집의 차이를 비교하기 위해 DGGE를 수행한 결과, gel 상에서 다양한 위치의 밴드를 확인할 수 있으며, 부엽토별로 공통적 및 특이적 밴드를 확인할 수 있었다.

• Journal of Korean Society of Environmental Engineers
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• v.33 no.5
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• pp.314-324
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• 2011

Algal biomass cultivated by wastewater is potentially useful resource for biodiesel production. However, little is known about algal nutrient metabolism and microbial interaction with bacteria under real municipal wastewater condition. In this work, we characterized nitrogen and phosphorus removals of municipal wastewater by a representative wastewater-growing algal population. Ankistrodesmus gracilis SAG 278-2, and analyzed its ecological interaction with wastewater bacterial communities. Compared to wastewater sludge itself, algal-bacterial co-culture improved nutrient removal. According to bacterial community analysis with 16S rRNA genes, a selective and dominant growth of a Unclassified Alcaligenaceae population resulted from algal growth in the algal-bacterial co-culture. The selectively stimulated bacterial population is phylogenetically close to Alcaligenes faecalis subsp. 5659-H, which is known to be co-present interact with algae in aquatic environment. These findings suggest that algal growth/metabolism may have effects on selection of a specific bacterial population in algal-bacterial co-cultures that can efficiently remove nutrients from municipal wastewater.

• Korean Journal of Microbiology
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• v.46 no.3
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• pp.286-290
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• 2010

C-1 compounds are observed in anaerobic sediment of high salt environments. Thus, surface sediments and waters from these environments are therefore potential habitats for aerobic methylotrophic microorganisms. The soil samples collected from saltern and tidal flat as inoculums and methanol as carbon and energy source was supplied. After subculture depending on the salt concentration, methanol oxidizing bacteria growth condition investigated, the results of methanol oxidizing bacteria can grow in salt conditions, and the maximum concentration was 20%. Analysis based on denaturing gradient gel electrophoresis of 16S rRNA genes indicates that Methelyophaga-like bacteria were dominants of methylotrophs in the enrichment culture. Quantitative PCR showed that archaeal cells were about 1-10% of bacterial cells. Additionally archaea were assumed not to be involved in methanol oxidation since bacterial antibiotics completely blocked the methanol oxidation. Our results suggest that Methelyophaga-like bacteria could be involved in C-1 compounds oxidation in hypersaline environments although those activities are sensitive to salinity above 20%.