• Title/Summary/Keyword: 기능유전체

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Development of a process for the implementation of fine electronic circuits on the surface of nonconductive polymer film (비전도성 폴리머 필름 표면상에 미세 전자회로 구현을 위한 공정개발)

  • Jeon, Jun-Mi;Gu, Seok-Bon;Heo, Jin-Yeong;Lee, Chang-Myeon;Lee, Hong-Gi
    • Proceedings of the Korean Institute of Surface Engineering Conference
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    • 2017.05a
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    • pp.121-121
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    • 2017
  • 본 연구는 비전도성 폴리머 표면을 개질하여 감광성 금속을 유전체 표면에 흡착시키고, 감광성 금속의 광화학 반응을 이용하여 귀금속 촉매를 비전도성 폴리머 표면에 선택적으로 흡착시켜 무전해 Cu 도금을 수행하여 금속패턴을 형성하였다. 기능성 유연 필름은 일반적으로 투명한 플라스틱 고분자 기판을 기반으로 전기 전자, 에너지, 자동차, 포장, 의료 등 다양한 분야에서 폭넓게 활용 되고 있으며, 본 연구에서는 습식 도금 공정을 이용하여 폴리이미드 필름상에 $10{\mu}m$ 이하의 미세패턴을 형성하기 위한 공정을 개발하고자 하였다. 비전도성 폴리머 표면에 무전해 도금을 위해서 우선 폴리머 필름의 표면을 개질하는 공정이 필요하다. 이에 KOH 또는 NaOH 알카리 용액을 이용하여 표면을 개질하였으며 개질된 표면에 감광성 금속이온의 흡착시키기 위한 감광성 금속이온은 주석을 사용하였으며, 주석 용액의 안정성 및 퍼짐성 향상을 위해 감광성 금속 용액의 제조 및 특성을 관찰하였으며, 감광성 금속화합물이 흡착된 비전도성 유전체 표면을 포토마스크를 이용하여 특정 부위, 즉 표면에 금속패턴 층을 형성하고자 하는 곳은 포토마스크를 이용하여 광원을 차단하고 그 외 부분은 주 파장이 365nm와 405nm 광원을 조사하여 선택적으로 감광성 금속화합물의 산화반응을 유도하는 광조사 공정을 수행하였다. 광원이 조사되지 않은 부분에 귀금속 등의 촉매 입자를 치환 흡착시켜 금속 패턴이 형성될 수 있는 표면을 형성하였다. 위의 활성화 공정이후에 활성화 처리된 표면을 세척하는 수세 공정을 거친 후 무전해 도금공정에 바로 적용할 경우 미세한 귀금속 입자가 패턴이 아닌 부분 즉 자외선(UV) 조사된 부분에도 남아있어 도금시 번짐 현상이 발생한다. 이에 본 연구에서는 활성화 처리 후 약 알칼리 용액에 카르복실산을 혼합하여 잔존하는 귀금속 입자를 제거한 후 무전해 Cu 도금액을 이용하여 $10{\mu}m$ 이하의 Cu 금속 패턴을 형성하였다.

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Good to Great Microarray Research

  • Kim Seong-Han
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2006.02a
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    • pp.57-61
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    • 2006
  • Microarray란 유리, 실리콘, 플라스틱 등의 매체위에 생체분자를 집적하여 만든 플랫폼을 의미한다. 현재 이러한 플랫폼에 DNA, 화학물질, 유기물질 등 바이오소재를 집적하여 다양한 연구용 제품들이 출시되어 있으며, 수년간 Microarray를 이용한 연구가 진행되어 최근에는 질병진단/예후예측 등의 포괄적인 정보를 포함하는 임상용 microarray제품도 등장하고 있다. 디지탈지노믹스(주)는 2000년 이후로 6년의 기간동안 연구자에게 다양한 종류의microarray를 공급하여 왔으며, 현재 국내에서 가장 많은 종류의 microanay 분석 시스템을 확보하고 있다. 따라서 다양한 연구자들에게 가장 적합한 microarray를 소개할 수 있음은 물론, 그 결과분석 데이터를 제공함으로써 양질의 데이터와 서비스를 제공하고 있다. 특히 디지탈지노믹스(주)에서는 최근에 Combimatrix사의 microarray 시스템을 도입하여, 연구자가 원하는 맞춤형 microarray를 제작할 수 있는 새로운 형태의 차세대 플랫폼을 제공할 수 있게 되었다. 이 기술은 연구자의 목적에 맞게 microarray 제작이 가능하도록 가변적인 특성을 가지고 있으며 높은 민감도 및 재현성을 보여주는 우수한 기술력을 보여준다. Microarray 분야는 그 플랫폼과 분석기술이 나날이 발전하고 있으며, 그 응용범위도 날로 넓어 지고 있다. 그 활용범위의 예를 보면, 1) 유전체 수준에서 발현양상 분석, 2) 약물에 대한 반응성 분석, 3) 질환에 대한 원인 유전자 규명 및 진단제 개발, 4) 독성유전체에서의 약효 및 유효성 분석, 5) 대량의 SNP 분석, 6) 대량의 단백질 수준에서의 발현분석 등이 있으며, 일일이 다 언급하기 힘들 정도로 그 응용범위가 넓어지고 있다. 이러한 microarray기술은 관심 있는 대상에 대한 검색(screening)의 기능과 더불어 분석된 데이터를 기초로 제품화 플랫폼으로써 다시 활용될 수 있는 장점을 가지고 있다. 디지탈지노믹스(주)에서는 구축되어 있는 microarray 분석 시스템을 이용하여 질병 진단, 약물반응성 진단 및 플랫폼 개발에 대한 내부연구도 심도 있게 수행하고 있으며, microarray 기술을 응용하여 산업화, 제품화 할 수 있는 구체적인 사례와 모범답안을 만들기 위해 노력하고 있다.

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Draft genome sequence of lytic bacteriophage SA7 infecting Staphylococcus aureus isolates (Staphylococcus aureus 분리주를 감염시키는 용균 박테리오파지 SA7의 유전체 염기서열 초안)

  • Kim, Youngju;Lee, Gyu Min;Taizhanova, Assiya;Han, Beom Ku;Kim, Hyunil;Ahn, Jeong Keun;Kim, Donghyuk
    • Korean Journal of Microbiology
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    • v.54 no.1
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    • pp.77-78
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    • 2018
  • Staphylococcus aureus is a Gram-positive and a round-shaped bacterium of Firmicutes phylum, and is a common cause of skin infections, respiratory infections, and food poisoning. Bacteriophages infecting S. aureus can be an effective treatment for S. aureus infections. Here, the draft genomic sequence is announced for a lytic bacteriophage SA7 infecting S. aureus isolates. The bacteriophage SA7 was isolated from a sewage water sample near a livestock farm in Chungcheongnam-do, South Korea. SA7 has a genome of 34,730 bp and 34.1% G + C content. The genome has 53 protein-coding genes, 23 of which have predicted functions from BLASTp analysis, leaving the others conserved proteins with unknown function.

Mutagenesis of of Hypsizygus marmoreus by Gamma Ray Irradiation (감마방사선 조사에 의한 느티만가닥버섯의 변이)

  • Kim, Jong-Kun;Moon, Deok-Hun;Seo, Geon-Sik;Kang, Hee-Wan
    • The Korean Journal of Mycology
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    • v.39 no.3
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    • pp.231-234
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    • 2011
  • This study was performed to develop new Hypsizygus marmoreus cultivars that have enhanced functional materials and improved physiological characteristics with mutagenesis by gamma ray irradiation. Protoplasts of H. marmoreus brown strain HYM-056 were irradiated by gamma ray for mutagenesis, and then 2,000 clones of mutants were randomly selected and the fruiting bodies were induced by bottle culture. Among them, 157 isolates with fast-growing, heavy and many fruiting body-producing were selected. The isolates were cultured in plastic bottle containing rice bran, barley hulls and fir sawdust to form the fruiting bodies. About 100 days after inoculation, characteristic of fruiting bodies were investigated. The isolates were divided into 6 groups based on color, shape and size of pileus, and length, diameter, number and weight of stipe. In addition, the genetic variation of the isolates was analyzed by URP-PCR fingerprinting.

Exploring the role and characterization of Burkholderia cepacia CD2: a promising eco-friendly microbial fertilizer isolated from long-term chemical fertilizer-free soil

  • HyunWoo Son;Justina Klingaite;Sihyun Park;Jae-Ho Shin
    • Journal of Applied Biological Chemistry
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    • v.66
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    • pp.394-403
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    • 2023
  • In the pursuit of sustainable and environmentally-friendly agricultural practices, we conducted an extensive study on the rhizosphere bacteria inhabiting soils that have been devoid of chemical fertilizers for an extended period exceeding 40 years. Through this investigation, we isolated a total of 80 species of plant growth-promoting rhizosphere bacteria and assessed their potential to enhance plant growth. Among these isolates, Burkholderia cepacia CD2 displayed remarkable plant growth-promoting activity, making it an optimal candidate for further analysis. Burkholderia cepacia CD2 exhibited a range of beneficial characteristics conducive to plant growth, including phosphate solubilization, siderophore production, denitrification, nitrate utilization, and urease activity. These attributes are well-known to positively influence the growth and development of plants. To validate the taxonomic classification of the strain, 16S rRNA gene sequencing confirmed its placement within the Burkholderia genus, providing further insights into its phylogenetic relationship. To delve deeper into the potential mechanisms underlying its plant growth-promoting properties, we sought to confirm the presence of specific genes associated with plant growth promotion in CD2. To achieve this, whole genome sequencing (WGS) was performed by Plasmidsaurus Inc. (USA) utilizing Oxford Nanopore technology (Abingdon, UK). The WGS analysis of the genome of CD2 revealed the existence of a subsystem function, which is thought to be a pivotal factor contributing to improved plant growth. Based on these findings, it can be concluded that Burkholderia cepacia CD2 has the potential to serve as a microbial fertilizer, offering a sustainable alternative to chemical fertilizers.

Design of a Broadband Sleeve Monopole Antenna by Using Matching Characteristics of the Sleeve (슬리브 정합 특성을 이용한 광대역 슬리브 모노폴 안테나 설계)

  • Ryu, Han-Cheol
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.16 no.10
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    • pp.6839-6845
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    • 2015
  • The optimization design method for the broadband operation of the sleeve monopole was proposed to unify the multiple antennas essential to the multi-functional broadband wireless communication systems into one antenna. The structure of the sleeve part was optimized to enhance the impedance matching characteristics based on the theoretical analysis that sleeve part can works as the open stub. The thick monopole was used for the broadband operation. The radius of the sleeve and the permittivity of the dielectric inside the sleeve was optimized to enhance the impedance matching characteristics for the broadband operation. The optimized sleeve monopole having thick monopole shows broadband characteristics over 3:1 bandwidth, from 0.8 to 2.43 GHz, which is suitable for the commercial wireless communication system. The proposed broadband sleeve monopole can reduce multiple antennas essential to the multi-functional broadband systems to one antenna.

Design of Translator for generating Secure Java Bytecode from Thread code of Multithreaded Models (다중스레드 모델의 스레드 코드를 안전한 자바 바이트코드로 변환하기 위한 번역기 설계)

  • 김기태;유원희
    • Proceedings of the Korea Society for Industrial Systems Conference
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    • 2002.06a
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    • pp.148-155
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    • 2002
  • Multithreaded models improve the efficiency of parallel systems by combining inner parallelism, asynchronous data availability and the locality of von Neumann model. This model executes thread code which is generated by compiler and of which quality is given by the method of generation. But multithreaded models have the demerit that execution model is restricted to a specific platform. On the contrary, Java has the platform independency, so if we can translate from threads code to Java bytecode, we can use the advantages of multithreaded models in many platforms. Java executes Java bytecode which is intermediate language format for Java virtual machine. Java bytecode plays a role of an intermediate language in translator and Java virtual machine work as back-end in translator. But, Java bytecode which is translated from multithreaded models have the demerit that it is not secure. This paper, multhithread code whose feature of platform independent can execute in java virtual machine. We design and implement translator which translate from thread code of multithreaded code to Java bytecode and which check secure problems from Java bytecode.

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A Review of Sirtuin Inhibitors in Therapeutics, Pharmaceutics, and Plant Research (치료제, 조제학 및 식물을 위한 서투인 억제제의 유용성)

  • Lee, Yew
    • Journal of Life Science
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    • v.30 no.1
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    • pp.96-105
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    • 2020
  • Sirtuin inhibitors are pharmaceutically and therapeutically valuable compounds that inhibit sirtuin, a type III histone deacetylase. Synthetic sirtuin inhibitors were discovered and characterized using cell-based screens in yeast (Saccharomyces cerevisiae) and have been used in the study of aging, carcinogenesis, and diabetes, all of which are related to sirtuin function. For medical applications, synthetic inhibitors have been further developed for increased potency and specificity, including compounds containing nicotinamide, thioacetyl lysine, β-naphthol, and indole derivatives. Suramin, tenovin, and their analogues were developed as a result. Sirtuin inhibitors were found to affect organic development and have been used to genetically modify plants, although a sirtinol-resistant mutation in the biosynthesis of a molybdopterin cofactor for an aldehyde oxidase has been identified. Some natural flavonoids, and catechin and quercetin derivatives also act as sirtuin inhibitors have been studied to identify a more potent inhibitor for therapeutic purposes. In this review, sirtuin is introduced and the therapeutic inhibitors that have been developed are presented, particularly sirtinol which has been used for genetic modification in plants though it was not designed to be so. Sirtuin inhibitors with greater potency and selectivity are required and those developed in pharmaceutics should be used in plant research to identify more authentic sirtuins in plants.

DNA microarray analysis of RNAi plant regulated expression of NtROS2a gene encoding cytosine DNA demethylation (시토신 탈메틸화 관련 NtROS2a 유전자 발현을 제어한 RNAi 식물의 DNA microarray 분석)

  • Choi, Jang Sun;Lee, In Hye;Jung, Yu Jin;Kang, Kwon Kyoo
    • Journal of Plant Biotechnology
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    • v.43 no.2
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    • pp.231-239
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    • 2016
  • To study the transcript levels of epigenetically regulated genes in tobacco, we have developed a transgenic line OX1 overexpressing NtROS2a gene encoding cytosine DNA demethylation and a RNAi plant line RNAi13. It has been reported that salt- and $H_2O_2$-stress tolerance of these transgenic lines are enhanced with various phenotypic characters (Lee et al. 2015). In this paper, we conducted microarray analysis with Agilent Tobacco 4 x 44K oligo chip by using overexpression line OX1, RNAi plant line RNAi 13, and wild type plant WT. Differentially expressed genes (DEGs) related to metabolism, nutrient supply, and various stressed were up-regulated by approximately 1.5- to 80- fold. DEGs related to co-enzymes, metabolism, and methylation functional genes were down-regulated by approximately 0.03- to 0.7- fold. qRT-PCR analysis showed that the transcript levels of several candidate genes in OX1 and RNAi lines were significantly (p < 0.05) higher than those in WT, such as genes encoding KH domain-containing protein, MADS-box protein, and Zinc phosphodiesterase ELAC protein. On the other hand, several genes such as those encoding pentatricopeptide (PPR) repeat-containing protein, histone deacetylase HDAC3 protein, and protein kinase were decreased by approximately 0.4- to 1.0- fold. This study showed that NtROS2a gene encoding DNA glycosylase related to demethylation could regulate adaptive response of tobacco at transcriptional level.

Comparison of Hsp90 and CYP1A Expression Patterns by Water Temperature Stress in Atlantic Salmon (Salmo salar) (대서양 연어(Salmo salar)의 수온 스트레스에 의한 Hsp90 및 CYP1A 발현 양상 비교)

  • Kang, Han Seung;Song, Jae-Hee;Kang, Hee Woong
    • Journal of Marine Life Science
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    • v.3 no.2
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    • pp.51-58
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    • 2018
  • Variations in water temperature are known to affect almost every part of fish physiology. The rise in water temperature due to climate change can physically damage fish. This study was conducted to evaluate the health status of the Atlantic salmon (Salmo salar) at high water temperature (20℃) than the optimum water temperature (15℃). Liver tissue exerts important metabolic functions in thermal adaptation. Therefore, liver tissue was used in this study. The evaluation method is to develop the biomarker gene using NGS RNAseq analysis and to examine the expression pattern using RT-qPCR analysis. The NGS RNAseq analysis revealed 1,366 differentially expressed genes, among which 880 genes were increase expressed and 486 genes were decrease expressed. The biomarker genes are such as heat shock protein 90 alpha (Hsp90α), heat shock protein 90 beta (Hsp90β) and cytochrome P450 1A (CYP1A). The selected genes are sensitive to changes in water temperature through NGS RNAseq analysis. Expression patterns of these genes through RT-qPCR were similar to those of NGS RNAseq analysis. The results of this study can be applied to other fish species and it is considered to be useful industrially.