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Establishment of Quantitative Analysis Method for Genetically Modified Maize Using a Reference Plasmid and Novel Primers

  • Moon, Gi-Seong;Shin, Weon-Sun
    • Preventive Nutrition and Food Science
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    • v.17 no.4
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    • pp.274-279
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    • 2012
  • For the quantitative analysis of genetically modified (GM) maize in processed foods, primer sets and probes based on the 35S promoter (p35S), nopaline synthase terminator (tNOS), p35S-hsp70 intron, and zSSIIb gene encoding starch synthase II for intrinsic control were designed. Polymerase chain reaction (PCR) products (80~101 bp) were specifically amplified and the primer sets targeting the smaller regions (80 or 81 bp) were more sensitive than those targeting the larger regions (94 or 101 bp). Particularly, the primer set 35F1-R1 for p35S targeting 81 bp of sequence was even more sensitive than that targeting 101 bp of sequence by a 3-log scale. The target DNA fragments were also specifically amplified from all GM labeled food samples except for one item we tested when 35F1-R1 primer set was applied. A reference plasmid pGMmaize (3 kb) including the smaller PCR products for p35S, tNOS, p35S-hsp70 intron, and the zSSIIb gene was constructed for real-time PCR (RT-PCR). The linearity of standard curves was confirmed by using diluents ranging from $2{\times}10^1{\sim}10^5$ copies of pGMmaize and the $R^2$ values ranged from 0.999~1.000. In the RT-PCR, the detection limit using the novel primer/probe sets was 5 pg of genomic DNA from MON810 line indicating that the primer sets targeting the smaller regions (80 or 81 bp) could be used for highly sensitive detection of foreign DNA fragments from GM maize in processed foods.

Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato

  • Cho, Min Seok;Park, Duck Hwan;Namgung, Min;Ahn, Tae-Young;Park, Dong Suk
    • The Plant Pathology Journal
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    • v.31 no.2
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    • pp.123-131
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    • 2015
  • Clavibacter michiganensis subsp. sepedonicus (Cms) multiplies very rapidly, passing through the vascular strands and into the stems and petioles of a diseased potato. Therefore, the rapid and specific detection of this pathogen is highly important for the effective control of the pathogen. Although several PCR assays have been developed for detection, they cannot afford specific detection of Cms. Therefore, in this study, a computational genome analysis was performed to compare the sequenced genomes of the C. michiganensis subspecies and to identify an appropriate gene for the development of a subspecies-specific PCR primer set (Cms89F/R). The specificity of the primer set based on the putative phage-related protein was evaluated using genomic DNA from seven isolates of Cms and 27 other reference strains. The Cms89F/R primer set was more specific and sensitive than the existing assays in detecting Cms in in vitro using Cms cells and its genomic DNA. This assay was also able to detect at least $1.47{\times}10^2copies/{\mu}l$ of cloned-amplified target DNA, 5 fg of DNA using genomic DNA or $10^{-6}$ dilution point of 0.12 at $OD_{600}$ units of cells per reaction using a calibrated cell suspension.

Performance Prediction of a Laser-guide Star Adaptive Optics System for a 1.6 m Telescope

  • Lee, Jun Ho;Lee, Sang Eun;Kong, Young Jun
    • Current Optics and Photonics
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    • v.2 no.3
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    • pp.269-279
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    • 2018
  • We are currently investigating the feasibility of a 1.6 m telescope with a laser-guide star adaptive optics (AO) system. The telescope, if successfully commissioned, would be the first dedicated adaptive optics observatory in South Korea. The 1.6 m telescope is an f/13.6 Cassegrain telescope with a focal length of 21.7 m. This paper first reviews atmospheric seeing conditions measured over a year in 2014~2015 at the Bohyun Observatory, South Korea, which corresponds to an area from 11.6 to 21.6 cm within 95% probability with regard to the Fried parameter of 880 nm at a telescope pupil plane. We then derive principal seeing conditions such as the Fried parameter and Greenwood frequency for eight astronomical spectral bands (V/R/I/J/H/K/L/M centered at 0.55, 0.64, 0.79, 1.22, 1.65, 2.20, 3.55, and $4.77{\mu}m$). Then we propose an AO system with a laser guide star for the 1.6 m telescope based on the seeing conditions. The proposed AO system consists of a fast tip/tilt secondary mirror, a $17{\times}17$ deformable mirror, a $16{\times}16$ Shack-Hartmann sensor, and a sodium laser guide star (589.2 nm). The high order AO system is close-looped with 2 KHz sampling frequency while the tip/tilt mirror is independently close-looped with 63 Hz sampling frequency. The AO system has three operational concepts: 1) bright target observation with its own wavefront sensing, 2) less bright star observation with wavefront sensing from another bright natural guide star (NGS), and 3) faint target observation with tip/tilt sensing from a bright natural guide star and wavefront sensing from a laser guide star. We name these three concepts 'None', 'NGS only', and 'LGS + NGS', respectively. Following a thorough investigation into the error sources of the AO system, we predict the root mean square (RMS) wavefront error of the system and its corresponding Strehl ratio over nine analysis cases over the worst ($2{\sigma}$) seeing conditions. From the analysis, we expect Strehl ratio >0.3 in most seeing conditions with guide stars.

Subacute Inhalation Toxicity Study of Dimethyl Disulfide in F344 Rats (F344 랫드를 이용한 이황화메틸의 아급성 흡입독성연구)

  • Kim Hyeon-Yeong;Lee Sung-Bae;Han Jung-Hee;Chung Yong-Hyun;Kim Hyoung-Chin;Shin Jin-Young;Shin Dong-Ho;Kim Jong-Choon;Lee Young-Mook
    • Journal of Life Science
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    • v.15 no.1 s.68
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    • pp.1-8
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    • 2005
  • The purpose of this study was to investigate the potential subacute toxicity of dimethyl disulfide by 3 weeks inhalation in F344 rats. The test article, dimethyl disulfide was exposed by inhalation to male and female rats at dose levels of 0, 5, 25, or 125 ppm/6 hrs/ day for 3 weeks. Five rats/ sex/ group were sacrificed on day 4 after the initiation of treatment, while 5 rats/ sex/ group were sacrificed at the end of treatment period. During the test period, clinical signs, mortality, body weights, food consumption, hematology, serum biochemistry, and gross findings were examined. Slight decreases in body weight gain were noted in both sexes of the highest dose group in a dose dependent manner but were only statistically different from the control animals in males of the group. A slight non-significant reduction in food consumption were also noted in the both sexes of the highest dose group. There were no adverse effects on mortality, clinical signs, hematology, serum biochemistry, and necropsy findings at any dose tested. Based on these results, it was concluded that the 3 weeks repeated dose of dimethyl disulfide by inhalation resulted in suppressed body weight gain and decreased food consumption at 125 ppm of both sexes. In the present experimental conditions, the target organ was not determined in rats. The no­observed-adverse-effect level (NOAEL) was considered to be 25 ppm/6 hrs/day for both sexes.

Biological Control of Soil-borne Diseases with Antagonistic Bacteria

  • Kim, Byung-Ryun;Hahm, Soo-Sang;Han, Kwang-Seop;Kim, Jong-Tae;Park, In-Hee
    • 한국균학회소식:학술대회논문집
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    • 2016.05a
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    • pp.25-25
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    • 2016
  • Biological control has many advantages as a disease control method, particularly when compared with pesticides. One of the most important benefits is that biological control is an environmental friendly method and does not introduce pollutants into the environment. Another great advantage of this method is its selectivity. Selectivity is the important factor regarding the balance of agricultural ecosystems because a great damage to non target species can lead to the restriction of natural enemies' populations. The objective of this research was to evaluate the effects of several different bacterial isolates on the efficacy of biological control of soil borne diseases. White rot caused by Sclerotium cepivorum was reported to be severe disease of garlic and chive. The antifungal bacteria Burkholderia pyrrocinia CAB08106-4 was tested in field bioassays for its ability to suppress white rot disease. In field tests, B. pyrrocinia CAB08106-4 isolates suppressed white rot in garlic and chive, with the average control efficacies of 69.6% and 58.9%, respectively. In addition, when a culture filtrate of B. pyrrocinia CAB08106-4 was sprayed onto wounded garlic bulbs after inoculation with a Penicillium hirstum spore suspension in a cold storage room ($-2^{\circ}C$), blue mold disease on garlic bulbs was suppressed, with a control efficacy of 79.2%. These results suggested that B. pyrrocinia CAB08106-4 isolates could be used as effective biological control agents against both soil-borne and post-harvest diseases of Liliaceae. Chinese cabbage clubroot caused by Plasmodiophora brassicae was found to be highly virulent in Chinese cabbage, turnips, and cabbage. In this study, the endophytic bacterium Flavobacterium hercynium EPB-C313, which was isolated from Chinese cabbage tissues, was investigated for its antimicrobial activity by inactivating resting spores and its control effects on clubroot disease using bioassays. The bacterial cells, culture solutions, and culture filtrates of F. hercynium EPB-C313 inactivated the resting spores of P. brassicae, with the control efficacies of 90.4%, 36.8%, and 26.0%, respectively. Complex treatments greatly enhanced the control efficacy by 63.7% in a field of 50% diseased plants by incorporating pellets containing organic matter and F. hercynium EPB-C313 in soil, drenching seedlings with a culture solution of F. hercynium EPB-C313, and drenching soil for 10 days after planting. Soft rot caused by Pectobacterium carotovorum subsp. carotovorum was reported to be severe disease to Chinese cabbage in spring seasons. The antifungal bacterium, Bacillus sp. CAB12243-2 suppresses the soft rot disease on Chinese cabbage with 73.0% control efficacy in greenhouse assay. This isolate will increase the utilization of rhizobacteria species as biocontrol agents against soft rot disease of vegetable crops. Sclerotinia rot caused by Sclerotinia sclerotiorum has been reported on lettuce during winter. An antifungal isolate of Pseudomonas corrugata CAB07024-3 was tested in field bioassays for its ability to suppress scleritinia rot. This antagonistic microorganism showed four-year average effects of 63.1% of the control in the same field. Furthermore, P. corrugata CAB07024-3 has a wide antifungal spectrum against plant pathogens, including Sclerotinia sclerotiorum, Sclerotium cepivorum, Botrytis cinerea, Colletotrichum gloeosporioides, Phytophotra capsici, and Pythium myriotylum.

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A Capacitor-Charging Power Supply Using a Series-Resonant Three-Level Inverter Topology

  • Song I. H.;Shin H. S.;Choi C. H.
    • Proceedings of the KIPE Conference
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    • 2001.10a
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    • pp.301-303
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    • 2001
  • In this paper we present a Capacitor Charging Power Supply (CCPS) using a series-resonant three-level inverter topology to improve voltage regulation and use semiconductor switches having low blocking voltage capability such as MOSFETs. This inverter can be operated with two modes, Full Power Mode (FPM) and Half Power Mode (HPM). In FPM inverter supplies the high frequency step up transformer with full DC-link voltage and in HPM with half DC-link voltage. HPM switching method will be adopted when CCPS output voltage reaches the preset target value and operates in refresh mode-charge is maintained on the capacitor. In this topology each semiconductor devices blocks a half of the DC-link voltage[2]. A 15kW, 30kV CCPS has been built and will be tested for an electric precipitator application. The CCPS operates from an input voltage of 500VDC and has a variable output voltage between 10 to 30kV and 1kHz repetition rate at 44nF capacitive load [3]. A resonant frequency of 67.9kHz was selected and a voltage regulation of $0.83\%$ has been achieved through the use of half power mode without using the forced cut off the switch current [1]. The theory of operation, circuit topology and test results are given.

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Effect of pre-miRNA-1658 gene polymorphism on chicken growth and carcass traits

  • Shi, Jianzhou;Sun, Guirong
    • Asian-Australasian Journal of Animal Sciences
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    • v.30 no.4
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    • pp.455-461
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    • 2017
  • Objective: Polymorphisms occurring in the precursor region of microRNAs (miRNAs) affect the target gene and alter the biogenesis of miRNAs, resulting in phenotypic variation. The purpose of the study was to investigate the genetic effects of rs16681031 (C>G) mutation in the precursor region of gga-miR-1658 on the economic traits of the Gushi-Anka chicken F2 resource population. Methods: To explore the effect of miR-1658 polymorphisms on chicken economic traits, the SNP was genotyped by MassArray matrix-assisted laser desorption/ionization-time of flight mass spectrometry. The association between the SNP and chicken body size, growth and carcass traits was determined by linear mixed models. Results: The SNP was not only significantly associated with body weight at the age of 6, 8, 10, 12 weeks, respectively, but also with the breadth of the chicken chest, body slanting length and pelvic breadth at 4 weeks, chest depth at 8 weeks of age, and body slanting length at 12 weeks (p<0.05), respectively. Conclusion: Our data serve as a useful resource for further analysis of miRNA function, and represent a molecular genetic basis for poultry breeding.

Acoustic Characteristics of Korean Stops in Korean Child-directed Speech (한국어 아동 지향어에 나타난 폐쇄음의 음향 음성학적 특성)

  • Kim, Min-Jung
    • Phonetics and Speech Sciences
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    • v.1 no.3
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    • pp.117-122
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    • 2009
  • A variety of cross-linguistic studies has documented that the acoustic properties of speech addressed to young children include exaggeration of pitch contours and acoustically salient features of phonetic units. It has been suggested that phonetic modifications of child-directed speech facilitate young children's learning of speech sounds by providing detailed phonetic information about the target word. While there are several studies reporting vowel modifications in speech to infants (i.e., hyper-articulated vowels), there has been little research about consonant modifications in speech to young children (except for VOT). The present study examines acoustic properties of Korean stops in Korean mothers' speech to their children (seven children aged 27 to 38 months). Korean tense, lax, and aspirated stops are all voiceless in word-initial position, and are perceptually differentiated by several acoustic parameters including VOT, $f_0$ of the following vowel, and the amplitude difference of the first and second harmonics at the voice onset of the following vowel. This study compares values of these parameters in Korean child-directed speech to those in adult-directed speech from same speakers. Conclusions focus on the acoustic properties of Korean stops in child-directed speech and how they are modified to help Korean young children learn the three-way phonetic contrast.

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Support Vector Machine based Ballistic Limit Velocity Measurement for Small Caliber Projectile (SVM 기반 소화기 방호한계속도 측정방법 연구)

  • Kim, Jong-Hwan;Baik, Seungwon;Yoon, Byengjo;Jo, Sungsik
    • Journal of the Korea Institute of Military Science and Technology
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    • v.19 no.5
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    • pp.629-637
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    • 2016
  • This paper presents a ballistic limit velocity measurement using the support vector machine that classifies two classes, the partial penetration and the complete penetration, by generating a linear separating hyperplane that equally divides the classes. For the ballistic limit velocity measurement, the previous methods(MIL-STD-662F and NIJ-STD-0101.06) have required a large number of experiments that caused high cost and time. However, the proposed method is not only flexible, requiring 0.85 ~ 4.8 times fewer experiments but also reliable, providing less than 2 % difference in results compared to the previous methods. For its validation, live fire experiments were conducted using various thickness SS400 iron plates as a target and two different types of live bullets such as 5.56 mm M193 and 7.62 mm M80.

Formant Trajectories of English Vowels Produced by American Children (미국인 아동이 발음한 영어모음의 포먼트 궤적)

  • Yang, Byung-Gon
    • Phonetics and Speech Sciences
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    • v.3 no.1
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    • pp.23-34
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    • 2011
  • Many Korean children have difficulty learning English vowels. The gestures inside the oral and pharyngeal cavities are hard to control when they cannot see the gestures and the target vowel system is quite different from that of Korean. This study attempts to collect children's acoustic data of twelve English vowels published by Hillenbrand et al. (1995) online and to examine the acoustic features of English vowels for phoneticians and English teachers. The author used Praat to obtain the data systematically at six equidistant timepoints over the vowel segment avoiding any obvious errors. Results show inherent acoustic properties for vowels from the children's distribution of vowel duration, f0 and intensity values. Second, children's gestures for each vowel coincide with the regression analysis of all formant values at different timepoints regardless of the vocal fold and tract difference. Third, locus points appear higher than those of American males and females. Their gestures along the timepoints display almost similar patterns. From the results the author concludes that vowel formant trajectories provide useful and important information on dynamic articulatory gestures, which may be applicable to Korean children's education and correction of English vowels. Further studies on the developmental study of vowel formants and pitch values are desirable.

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