• Title/Summary/Keyword: ${\delta}$-sequence

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Stable Carbon Isotope Stratigraphy of the Cambrian Machari Formation in the Yeongweol Area, Gangweon Province, Korea

  • Chung, Gong-Soo;Lee, Jeong-Gu;Lee, Kwang-Sik
    • Journal of the Korean earth science society
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    • v.32 no.5
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    • pp.437-452
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    • 2011
  • The Steptoean Positive Carbon Isotope Excursion (SPICE) is found in the Machari Formation which was interpreted to have been deposited on the middle to outer carbonate ramp environment. The Machari Formation is the Middle to Late Cambrian in age and distributed in the Yeongweol area, Gangweon Province, Korea. The SPICE event in the Machari Formation begins with the first appearance datum of trilobite Glyptagnostus reticulatus and ends with the first appearance of datum of trilobite Irvingella. The SPICE is found in approximately 120 m thick sequence and ${\delta}^{13}C$ values in the SPICE interval range from 0.6 to 4.4‰. The SPICE in the Machari Formation is interpreted to be caused by burial of organic matter in the sea floor and subsequent increase of $^{13}C$ isotope of the Late Cambrian ocean. The SPICE interval in the Machari Formation corresponds to the highstand to transgressive systems tracts.

ANALYSIS AND MANIPULATION OF CANDIDATE GENES FOR DIARRHEAL DISEASE VACCINE DEVELOPMENTS

  • Kim Young-Chang
    • Proceedings of the Microbiological Society of Korea Conference
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    • 2000.05a
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    • pp.58-65
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    • 2000
  • Diarrheal diseases are a major cause of both illness and death in developing countries and are caused by rotavirus, Shigella spp., Salmonella spp., enterotoxigenic Escherichia coli (ETEC), and Vibrio spp. In this study, for the development of vaccine against diarrheal diseases caused by Shigella sonei, Salmonella typhimurium, E. coli O157, and Vibrio cholerae, cloning and nucleotide sequence analysis of genes and characteristics of their gene products in E. coli were performed. For construction of attenuated strain of S. sonnei KNIH104 and Salmonella typhimurium KNIH100, the aroA genes were cloned, respectively. The recombinant plasmid $_pJP{\Delta}A45$ containing aroA deleted region and suicide vector $(_pJP5603)$ was constructed. The aroA gene deleted mutants were constructed using this recombinant plasmid. For cloning gene encoding antigenic region of E. coli O157 KNIH317, the O-antigen synthesis gene cluster and sit gene was cloned. The E. coli XL1-Blue cells harboring this recombinant plasmid showed cytotoxicity in Vero cells. The ctx gene was cloned for tile purpose of antigenic region against V. cholerae KNIH002. Sequence analysis confirmed that the virulence gene cassette was consisted of ace, zot, ctxA and ctxB genes.

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Influence of Different Diagnostic Criteria on Frequency of Convergence Insufficiency (진단기준 차이가 폭주부족의 빈도에 미치는 영향)

  • Yu, Dong-Sik;Cho, Hyun Gug;Moon, Byeong-Yeon
    • Journal of Korean Ophthalmic Optics Society
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    • v.21 no.3
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    • pp.235-242
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    • 2016
  • Purpose: This study was to investigate whether the application of different diagnostic criteria affected the frequency of convergence insufficiency (CI). Methods: Eighty one subjects with mean age of 22.54 years (20 to 27 years) were evaluated. Binocularity tests after refraction were performed as the following tests: near point of convergence (NPC) with an accommodative target, phoria using von Graefe method, positive fusional vergence (PFV) with a phoropter. Subjects with CI were diagnosed when exophoria (exo) was greater at near than at distance ($exo{\geq}4{\Delta}$, or >$6{\Delta}$), fusional vergence was $PFV{\leq}11{\Delta}$ for blur, $PFV{\leq}15{\Delta}$ for break, Sheard's or Percival's criterion, and NPC was $NPC{\geq}6cm$, ${\geq}7.5cm$ or >10 cm. Results: Frequency of CI with one diagnostic criterion was ranged from 6.2% to 77.8%, and was overestimated or underestimated according to criteria. It was reduced to the range of 6.2% to 43.2% with diagnostic criteria more than two, especially to the range of 24.7% to 28.4% with lower variability in diagnostic criteria including phoria and Sheard's criterion. There were high relationship between total score of signs and phoria score (r = 0.772, p<0.001), and measured phoria and Sheard's criterion (r = -0.654, p<0.001), but NPC had a high variability and a weak or no significant relationship with other diagnostic criteria. Results suggested $exo{\geq}4{\Delta}$, Sheard's criterion and $NPC{\geq}7.5cm$ for diagnostic criteria of signs and sequence for CI. Conclusions: Frequency of CI is likely to be over- and underestimated with diagnostic criteria. Cutoff values and procedures for phoria, Sheard's criterion and NPC as clinical signs should be suggested definitely in diagnosis associated with CI.

Functional Analysis of the Putative BUB2 Homologues of C. elegans in the Spindle Position Checkpoint

  • Lee, Kyung-Hee;Song, Ki-Won
    • Animal cells and systems
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    • v.9 no.2
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    • pp.87-94
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    • 2005
  • Spindle position checkpoint monitors the orientation of mitotic spindle for proper segregation of replicated chromosomes into mother cell and the daughter, and prohibits mitotic exit when mitotic spindle is misaligned. BUB2 forms one of the key upstream element of spindle position checkpoint in budding yeast, but its functional homologues have not been identified in higher eukaryotes. Here, we analyzed the functions of two putative BUB2 homologues of C. elegans in the spindle orientation checkpoint. From the C. elegans genome database, we found that two open reading frames (ORFs), F35H12_2 and C33F10_2, showed high sequence homology with BUB2. We obtained the expressed sequence tag (EST) clones for F35H12_2 (yk221d4) and C33F10_2 (yk14e10) and verified the full cDNA for each ORF by sequencing and 5' RACE with SL1 primer. The functional complementation assays of yk221d4 and yk14e10 in ${\Delta}bub2$ of S. cerevisiae revealed that these putative BUB2 homologues of C. elegans could not replace the function of BUB2 in spindle position checkpoint and mitotic exit. Our attempt to document the component of spindle position checkpoint in metazoans using sequence homology was not successful. This suggests that structural information about its components might be required to identify functional homologues of the spindle position checkpoint in higher eukaryotes.

A Yeast MRE3/REC114 Gene is Essential for Normal Cell Growth and Meiotic Recombination

  • Leem, Sun-Hee
    • Journal of Microbiology
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    • v.37 no.4
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    • pp.248-255
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    • 1999
  • We have analyzed the MRE3/REC114 gene of Saccharomyces cerevisiae, previously detected in isolation of mutants defective in meiotic recombination. We cloned the MRE3/REC114 gene by complementation of the meiotic recombination defect and it has been mapped to chormosome XIII. The DNA sequence analysis revealed that the MRE3 gene is identical to the REC114 gene. The upstream region of the MRE3/REC114 gene contains a T_4C site, a URS (upstream repression sequence) and a TR (T-rich) box-like sequence, which reside upstream of many meiotic genes. Coincidentally, northern blot analysis indicated that the three sizes of MRE3/REC114 transcripts, 3.4, 1.4 and 1.2 kb, are induced in meiosis. A less abundant transcript of 1.4 kb is detected in both mitotic and meiotic cells, suggesting that it is needed in mitosis as well as meiosis. To examine the role of the MRE3/REC114 gene, we constructed mre3 disruption mutants. Strains carrying an insertion or null deletion of the MRE3/REC114 gene showed slow growth in nutrient medium and the doubling time of these cells increased approximately by 2-fond compared to the wild-type strain. Moreover, the deletion mutant (${\delta}$mre3) displayed no meiotically induced recombination and no viable spores. The mre3/rec114 spore lethality can be suppressed by spo13, a mutation that causes cells to bypass reductional division. The double-stranded breaks (DSBs) which are involved in initiation of meiotic recombination were not detected in the analysis of meiotic chromosomal DNA from the mre3/rec114 disruptant. From these results we suggest that the MRE3/REC114 gene product is essential in normal growth and in early meiotic stages involved in meiotic recombination.

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On (H, μn) Summability of Fourier Series

  • CHANDRA, SATISH
    • Kyungpook Mathematical Journal
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    • v.43 no.4
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    • pp.513-518
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    • 2003
  • In this paper, we have proved a theorem on Hausdorff summability of Fourier series which generalizes various known results. We prove that if $${\int}_{o}^{t}\;{\mid}{\phi}(u){\mid}\;du=o(t)\;as\;t{\rightarrow}0\; and\;\lim_{n{\rightarrow}{\infty}}{\int}^{\eta}_{{\pi}/n}{\frac{{\mid}{\phi}(t)-{\phi}(t+{\pi}/n){\mid}}{t}}dt=o(n)$$ where 0 < ${\eta}$ < 1, then the Fourier series is (H, ${\mu}_n$) summable to s at t = x where the sequence ${\mu}_n$ is given by ${\mu}_n={\int}^1_0x^n{\chi}(x)\;dx\;n=0,1,2\;and\;K_n(t)=\limits\sum_{{\nu}=0}^n(\array {n\\{\nu}})({\Delta}^{{n}-{\nu}}{\mu}_{\nu}){\frac{sin{\nu}t}{t}}$.

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PHYSICAL PARAMETERS OF THE OLD OPEN CLUSTER TRUMPLER 5

  • KIM SANG CHUL;SUNG HWANKYUNG
    • Journal of The Korean Astronomical Society
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    • v.36 no.1
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    • pp.13-19
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    • 2003
  • We present a study of the old open cluster Trumpler 5 (Tr 5), based on the CDS archival data. From the color-magnitude diagrams of Tr 5, we have found the positions of main-sequence turn-off (MSTO) and red giant clump (RGC) stars. Using the mean magnitude of the RGC stars, we have estimated the reddening toward Tr 5, E(B - V) = 0.60 $\pm$ 0.10. Using the stars common in two data sets and the theoretical isochrones of Padova group, we have estimated the distance modulus $V_o - M_v = 12.64 {\pm} 0.20 (d = 3.4 {\pm} 0.3 kpc)$, the metallicity [Fe/H) = -0.30 $\pm$ 0.10, and the age of 2.4 $\pm$ 0.2 Gyr (log t = 9.38). These metallicity and distance values are consistent with the relation between the metallicity and the Galactocentric distance of other old open clusters, for which we obtain the slope of ${\Delta}[Fe/H]/ R_{gc} = -0.064 {\pm} 0.010\;dex\;kpc^{-1}$.

On $L^1(T^1)$ - Convergence of Fourier Series with BV - Class Coefficients (BV - 족 계수를 갖는 푸리에 급수의 $L^1(T^1)$ - 수렴성에 관하여)

  • Lee, Jung-Oh
    • Journal of Integrative Natural Science
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    • v.1 no.3
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    • pp.216-220
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    • 2008
  • In general the Banach space $L^1(T^1)$ doesn't admit convergence in norm. Thus the convergence in norm of the partial sums can not be characterized in terms of Fourier coefficients without additional assumptions about the sequence$\{^{\^}f(\xi)\}$. The problem of $L^1(T^1)$-convergence consists of finding the properties of Fourier coefficients such that the necessary and sufficient condition for (1.2) and (1.3). This paper showed that let $\{{\alpha}_{\kappa}\}{\in}BV$ and ${\xi}{\Delta}a_{\xi}=o(1),\;{\xi}{\rightarrow}{\infty}$. Then (1.1) is a Fourier series if and only if $\{{\alpha}_{\kappa}\}{\in}{\Gamma}$.

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Turbulent Flow through a Square Straight and Curved Duct with Reynolds Stress Models (정사각 직관과 $180^{\circ}$ 곡관내 난류유동의 레이놀즈응력모형 적용)

  • Chun, Kun-Ho;Choi, Young-Don
    • Proceedings of the KSME Conference
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    • 2000.04b
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    • pp.771-776
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    • 2000
  • Fine grid calculations are reported for the developing turbulent flow in a straight duct and a curved duct of square cross-section with a radius of curvature to hydraulic diameter ratio ${\delta}=R_c/H_H=3.357$ and a bend angle of 180 deg. A sequence of modeling refinements is introduced; the replacement of wall function by a fine mesh across the sublayer and a low Reynolds number second moment closure up to the near wall sublayer in which the non-linear return to isotropy model and the cubic-quasi-isotropy model for the pressure strain are adopted; and the introduction of a multiple source model for the exact dissipation rate equation. Each refinement is shown to lead to an appreciable improvement in the agreement between measurement and computation.

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Regulation of fpr Gene Encoding NADPH : Ferredoxin Oxidoreductase by the soxRS Locus in Escherichia coli

  • Koh, Young-Sang;Choih, Jenny;Roe, Jung-Hye
    • Journal of Microbiology
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    • v.34 no.2
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    • pp.137-143
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    • 1996
  • We isolated a promoter inducible by paraquat, a superoxide-generating agent, from Escherichia coli using a promoter-probing plasmid pRS415. From sequence analysis we found out the promoter is for fpr ENCODING nadph : ferredoxin oxidoreductase. We constructed on operon fusion of lacZ gene with fpr promoter to monitor the expression of the gene in the single-copy state. LacZ expression generators, menadione and plumbagin, also induced the expression of .betha.-galactosidase in the fusion strain. On the other hand, no significant induction was observed by treatment with hydrogen peroxide, ethanol, and heat shock. Induction of .betha.-galactosidase was significantly reduced by introducing a .DELTA. sox 8 :: cat of soxS3 :: Tn10 mutation into the fusion strain, indicating that fpr gene is a member of the soxRS regulon. The transcriptional start site was determined by primer extension analysis. Possible roles of fpr induction in superoxide stress were discussed.

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