• Title/Summary/Keyword: $^{13}C$ labeling

검색결과 39건 처리시간 0.024초

/$^{13}C 및 ^{15}N$ 추적에 의한 탄소 및 질소 동화기전의 상관성에 관한 연구

  • 김태환
    • 한국초지학회:학술대회논문집
    • /
    • 한국초지조사료학회 1999년도 제24회 정기총회 및 프로그램, 제37회 학술발표회 및 특별강연 초록
    • /
    • pp.82-83
    • /
    • 1999
  • 탄소 및 질소동화의 상관성을 규명하기 위해 $^{13}$C(pulse chase)와 $^{15}$ N(continuous)을 labeling 한 후 6시간 동안 탄소 및 질소대사물로 동화된 동위원소를 분석하여 엽신, 엽병 및 뿌리조직 사이의 대사적 교감에 있어 탄소 및 질소 동화산물의 역할을 살펴보았다 $^{13}$$CO_2$로 75분간 labeling 한 후(0h), 광합성에 의해 고정된 $^{13}$C는 엽신에서 당의 형태로 주로 동화되었다.(중략)

  • PDF

Cost-effective isotope labeling technique developed for 15N/13C-labeled proteins

  • Kim, Hee-Youn;Hong, Eun-Mi;Lee, Weon-Tae
    • 한국자기공명학회논문지
    • /
    • 제15권2호
    • /
    • pp.115-127
    • /
    • 2011
  • A newly developed cost-effective approach to prepare $^{15}N/^{13}C$-labeled protein for NMR studies is presented. This method has been successfully applied to isotopically labeling of PTK6 SH2 domain and MTH 1880 protein. The production method generates cell density using a growing media containing $^{15}NH_4Cl$, $^{12}C_6$-D-glucose. Following a doubling time period for unlabeled metabolite exhaustion and then addition $^{13}C_6$-D-glucose into a M9 growing media, the cells are induced. Our results demonstrate that in order to get full incorporation of $^{13}C$, the isotopes are not totally required during the initial growth phase before induction. The addition of small amounts of $^{13}C_6$-D-glucose to the induction phase is sufficient to obtain more than 95% incorporation of isotopes into the protein. Our optimized protocol is two-thirds less costly than the classical method using $^{13}C$ isotope during the entire growth phase.

Relative Quantification of Glycans by Metabolic Isotope Labeling with Isotope Glucose in Aspergillus niger

  • Choi, Soo-Hyun;Cho, Ye-Eun;Kim, Do-Hyun;Kim, Jin-il;Yun, Jihee;Jo, Jae-Yoon;Lim, Jae-Min
    • Mass Spectrometry Letters
    • /
    • 제13권4호
    • /
    • pp.139-145
    • /
    • 2022
  • Protein glycosylation is a common post-translational modification by non-template-based biosynthesis. In fungal biotechnology, which has great applications in pharmaceuticals and industries, the importance of research on fungal glycoproteins and glycans is accelerating. In particular, the importance of quantitative analysis of fungal glycans is emerging in research on the production of filamentous fungal proteins by genetic modification. Reliable mass spectrometry-based techniques for quantitative glycomics have evolved into chemical, enzymatic, and metabolic stable isotope labeling methods. In this study, we intend to expand quantitative glycomics by metabolic isotope labeling of glycans in Aspergillus niger, a filamentous fungus model, by the MILPIG method. We demonstrate that incubation of filamentous fungi in a culture medium with carbon-13 labeled glucose (1-13C1) efficiently incorporates carbon-13 into N-linked glycans. In addition, for quantitative validation of this method, light and heavy glycans are mixed 1:1 to show the performance of quantitative analysis of various N-linked glycans simultaneously. We have successfully quantified fungal glycans by MILPIG and expect it to be widely applicable to glycan expression levels under various biological conditions in fungi.

항 단실 항체의 카르보닐탄소 유래 시그날의 귀속 (Assignment of the Carbonyl Carbon Resonances in Anti-Dansyl Antibodies)

  • 김하형;이광표
    • 약학회지
    • /
    • 제39권5호
    • /
    • pp.516-520
    • /
    • 1995
  • The anti-dansyl antibodies were specifically labeled with stable isotope by growing hybridoma cells in serum-free medium. Assignments of the observed carbonyl carbon resonances have been determined by using $^{13}C-{15}N$ double labeling method in order to assign the Leu resonances. However, when the identical dipeptide appears more than twice in the polypeptide sequences, we applied the proteolytic fragments in the fragment-specific method. Carboxypep-tidase B-treated antibody has also been used to assign the Lys-447 in C terminal amino acid. These unambiguously assigned carbonyl carbon resonances in antibodies are thought to be useful in elucidating not only the structure of antibodies but also the structure-function relationship in the antibody by $^{13}C$ neuclear magnetic resonance spectroscopy.

  • PDF

5령 누에에 있어서 Fibroin 생합성의 특성 (Characterization of Fibroin Biosynthesis in the 5th Instar of Bombyx mori)

  • 이인전;여주홍
    • 한국잠사곤충학회지
    • /
    • 제38권2호
    • /
    • pp.180-185
    • /
    • 1996
  • 가잠 실크 피브로인의 아미노산 조성 중 가장 많은 비율을 차지하고 있는 Glycine에 동위체 라벨링([1-13C]-Gly)을 실시하여 5령 1일째부터 고치를 지을 때까지의 생합성의 상태를 NMR법을 이용하여 추적하였다. 그 결과 5령 5일을 기준으로 가잠 실크의 결정부분을 형성하는 아미노산이 형성은 되나 실크의 결정부분을 형성하는 아미노산이 형성은 되나 실크가 되었을 때 결정성의 고배향 구조를 이루지 못하고 결정성의 저배향 구조를 형성하고마는 형태로 된다고 생각되어 졌다. 이 사실은 배향시료의 고체CP-NMR 스펙트럼의 피크 분리로부터 확인할 수 있었다. 그 결과 수소결합에 관여하는 N-H의 방향이 거의 수직이라고 할 수 있는 83˚의 분자축 부분이 18˚의 고배향 분포를 이루면서 82% 존재하고, 또 나는 N-H의 결합방향이 60˚인 분자축 부분이 18% 존재하면서 62˚의 배향분포를 이룬다고 하는 시뮤레이션의 결과로 설명되어졌다.

  • PDF

Stable Isotope Labeling of Proteins in Mammalian Cells

  • Lee, KyungRyun;Lee, Jung Ho
    • 한국자기공명학회논문지
    • /
    • 제24권3호
    • /
    • pp.77-85
    • /
    • 2020
  • Stable isotope enrichment in proteins is necessary for high-resolution nuclear magnetic resonance (NMR) experiments. Although methods for 13C, 15N and 2H-enrichment in prokaryotic cells are well established, full processing and correct folding of complex protein systems require higher organisms as the expression host. In the present study, we review recent efforts to enrich stable isotopes in mammalian cells for protein NMR studies.

Facile Synthesis and Radioiodine Labeling of Hypericin

  • Kim, Sang-Wook;Park, Jeong-Hoon;Yang, Seung-Dae;Hur, Min-Goo;Kim, Yu-Seok;Chai, Jong-Seo;Kim, Young-Soon;Yu, Kook-Hyun
    • Bulletin of the Korean Chemical Society
    • /
    • 제25권8호
    • /
    • pp.1147-1150
    • /
    • 2004
  • Hypericin (1,3,4,6,8,13-hexahydroxy-10,11-dimethylphenanthro[1,10,9,8-opqra]perylene-7,14-dione), an antidepressant which is also known to be a potent protein kinase C (PKC) inhibitor was synthesized as a precursor for radioiodine labeling via two step reactions. Malignant glioma cells express higher PKC activity compared to untransformed glial cell. Here we report the synthesis and radioiodine labeling of hypericin as a potential brain tumor imaging radiopharmaceutical. The reference compound, 2-iodohypericin, and its radiolabelled analogues, 2-[$^{123}I$]iodohypericin and 2-[$^{124}I$]iodohypericin have been prepared by the reaction of hypericin with NaI or [$^{123}I$]NaI or [$^{124}I$]NaI. The labeling yield was 60-65% for each analogue and the optimal reaction time was 10 min. The purification and isolation of the labelled products were achieved by a reversed-phase HPLC.

Potential Role of Protein Kinase C on the Differentiation of Erythroid Progenitor Cells

  • Lee, Sang-Jun;Cho, In-Koo;Huh, In-Hoe;Yoon, Ki-Yom;Ann, Hyung-Soo
    • Archives of Pharmacal Research
    • /
    • 제18권2호
    • /
    • pp.90-99
    • /
    • 1995
  • The effect of protein kinase C inhibitors, sturosporine and 1-(5-isoquinolinyl sulfonyl)-2-methyl piperazine(H7) on in vitro differentiation of erythroid progenitor cells which were isolated from spleens of mice infected with the anemia-inducing strain of Friend virus were examined. Erythropoietin-mediated differentitation of erythroid progenitor cells, as determined by the incorporation of $^{59}Fe$ into protoporphyrin, was inhibited by staurosporine and H7 in a concentration -dependent manner. Scatchard analysis of the $^3H-phorbol-12$, 13-dibutyrate binding to erythroid progenitor cells revealed that at the high affinity sites the dissociation constant was 22nM and the maximum number of $^3H-phorbol-12$, 13-dibutyrate binding to erythroid progenitor cells revealed that at the high affinity sites the dissociation constant was 22nM and the maximum number of $^3H-phorbol-12$, 13-dibutyrate binding sites per cell was approximately $3.7\times10^5$. Cytosonic protein kinase C was isolated from erthroid progenitor cells and then purified by sequential column chromatogrphy. Two isoforms of protein kinase C were found. Photoaffinity labeling of the purified protein kinase C samples with $^3H-phorbol-12$12-myristate 13-acetate followed by analysis of SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and autofluorography showed radiolabeled 82-KDa pepticles. Rediolabeling of the 82-KDa peptides with $^3H-phorbol-12$myristate 13-acete was almost completely blocked by excess unlabeled phorbol 12-myristate 13-acetate was almost 12-muristate 13-acetate-promoted phosphorylation with the puyrified protein kinase C samples showed that the phosphorylation of 82-KDa peptides was increased as the concentration of phorbol 12-myristate 13-acetate was increased from $10^{-8}M{\;}to{\;}10^{-4}$M. In light of the findings that erythroid progenitor cells possessed an abundance of protein kinase C and that stauroporine and H7 inhibited erythroid differentiation, it seemed likely that protein kinase C would play a role in the erythroid progenitor cell development.

  • PDF

Synthesis of $^3H$-Labeled dammarane triterpene glycosides of Korean ginseng

  • Han, Byung-Hoon;Woo, Lin-Keun
    • Archives of Pharmacal Research
    • /
    • 제1권1호
    • /
    • pp.27-32
    • /
    • 1978
  • A procedure of $^3H$-radio labeling synthesis for the dammarane triterpene glycosides of Korean ginseng was established by using the ginsenoside $Rg_1$ as starting material. The protons in $C-{11}$ and $C_{13}$ of the aglycone moiety of the glycoside were exchanged with tritium by keto-enol tautomerization of 12-keto-ginsenoside $Rg_1$ which was prepared by partial acetylation, Sarett oxidation and saponification, producing nona-acetate, nonaside $Rg_1$. The acety1-ketone and 12-keto-derivative of ginsenotritated ketone was reduced by metallic sodium and isoproponol to produce the end product $^3H$-ginsenoside $Rg_1$ with 3% radio-chemical recovery in one experiment.

  • PDF

Triple isotope-[13C, 15N, 2H] labeling and NMR measurements of the inactive, reduced monomer form of Escherichia coli Hsp33

  • Lee, Yoo-Sup;Ko, Hyun-Suk;Ryu, Kyoung-Seok;Jeon, Young-Ho;Won, Hyung-Sik
    • 한국자기공명학회논문지
    • /
    • 제14권2호
    • /
    • pp.117-126
    • /
    • 2010
  • Hsp33 is a molecular chaperone achieving a holdase activity upon response to a dual stress by heat and oxidation. Despite several crystal structures available, the activation process is not clearly understood, because the structure inactive Hsp33 as its reduced, zinc-bound, monomeric form has not been solved yet. Thus, we initiated structural investigation of the reduced Hsp33 monomer by NMR. In this study, to overcome the high molecular weight (33 kDa), the protein was triply isotope-[$^{13}C$, $^{15}N$, $^2H$]-labeled and its inactive, monomeric state was ensured. 2D-[$^1H$, $^{15}N$]-TROSY and a series of triple resonance spectra could be successfully obtained on a high-field (900 MHz) NMR machine with a cryoprobe. However, under all of the different conditions tested, the number of resonances observed was significantly less than that expected from the amino acid sequence. Thus, a possible contribution of dynamic conformational exchange leading to a line broadening is suggested that might be important for activation process of Hsp33.