Korean Journal of Plant Resources (한국자원식물학회지)

The Plant Resources Society of Korea (한국자원식물학회)
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SNP Markers Useful for the Selection of Yellow-fleshed Peach Cultivar

황육계 복숭아 품종 선발용 SNP 마커

  • Kim, Se Hee (Fruit Research Division, National Institute of Horticultural & Herbal Science) ;
  • Kwon, Jung-hyun (Fruit Research Division, National Institute of Horticultural & Herbal Science) ;
  • Cho, Kang Hee (Fruit Research Division, National Institute of Horticultural & Herbal Science) ;
  • Shin, Il Sheob (Fruit Research Division, National Institute of Horticultural & Herbal Science) ;
  • Jun, Ji Hae (Fruit Research Division, National Institute of Horticultural & Herbal Science) ;
  • Cho, Sang-Yun (Fruit Research Division, National Institute of Horticultural & Herbal Science)
  • 김세희 (농촌진흥청 국립원예특작과학원 과수과) ;
  • 권정현 (농촌진흥청 국립원예특작과학원 과수과) ;
  • 조강희 (농촌진흥청 국립원예특작과학원 과수과) ;
  • 신일섭 (농촌진흥청 국립원예특작과학원 과수과) ;
  • 전지혜 (농촌진흥청 국립원예특작과학원 과수과) ;
  • 조상윤 (농촌진흥청 국립원예특작과학원 과수과)
  • Received : 2021.06.22
  • Accepted : 2021.09.16
  • Published : 2021.10.01
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Abstract

Peach flesh color is commercially important criteria for classification and has implications for nutritional quality. To breed new yellow-fleshed peach cultivar many cross seedlings and generations should be maintained. Therefore it is necessary to develop early selection molecular markers for screening cross seedlings and germplasm with economically important traits to increase breeding efficiency. For the comparison of transcription profiles in peach varieties with a different flesh color expression, two cDNA libraries were constructed. Differences in gene expression between yellow-fleshed peach cultivar, 'Changhowon Hwangdo' and white-fleshed peach cultivar, 'Mibaekdo' were analyzed by next-generation sequencing (NGS). Expressed sequence tag (EST) of clones from the two varieties was selected for nucleotide sequence determination and homology searches. Putative single nucleotide polymorphisms (SNPs) were screened from peach EST contigs by high resolution melting (HRM) analysis, SNP ID ppa002847m:cds and ppa002540m:cds displayed specific difference between 17 yellow-fleshed and 21 white-fleshed peach varieties. The SNP markers for distinguishing yellow and white fleshed peach varieties by HRM analysis offers the opportunity to use early selection. This SNP markers could be useful for marker assisted breeding and provide a good reference for relevant research on molecular mechanisms of color variation in peach varieties.

복숭아 과육색은 상업적으로 중요한 분류 기준이며 영양 품질에 영향을 미친다. 카로티노이드가 다량 함유된 새로운 황색 과육 품종을 육성하기 위해서는 많은 교배 조합과 세대가 진전되어야 한다. 따라서 육종 효율을 높이기 위해서는 경제적으로 중요한 형질을 가진 교배 집단과 유전자원에 적용할 조기 선발마커를 개발할 필요가 있다. 과육색이 다르게 발현되는 복숭아 품종의 유전자 발현을 비교하기 위해 2개의 cDNA library를 제작하였다. 황색 과육 품종인 '장호원황도'와 백색 과육 품종인 '미백도'의 유전자 발현 차이를 보기 위해 차세대 염기서열 분석 기술을 사용하였고 두 품종으로부터 얻은 EST의 염기서열을 결정하고 기존에 보고된 유전자와의 상동성을 분석하였다. EST 데이터로부터 황색 과육 품종 17개와 백색 과육 품종 22개를 구분할 수 있는 2종의 SNP 마커(SNP ID, ppa002847m:cds와 SNP ID, ppa002540m:cds)를 선발하였고, HRM 방법으로 분석하였다. 본 연구 결과는 복숭아 육종에 유용하게 사용할 수 있으며 복숭아 품종의 다양한 색 변화에 관한 분자 기작 연구에 좋은 참고자료가 될 수 있을 것이다.

Keywords

Acknowledgement

본 연구는 농촌진흥청 연구과제(세부과제번호:PJ013381012021)의 지원에 의해 이루어진 것임

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