• 제목/요약/키워드: universal primers

검색결과 105건 처리시간 0.022초

국내 포도나무 혹병(Agrobacterium vitis) 균주의 유전적 다양성 (Genetic Diversity of Agrobacterium vitis Strains in Korea)

  • 김종군;최재을;강희완
    • 식물병연구
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    • 제13권3호
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    • pp.137-144
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    • 2007
  • 거봉 포도나무에 혹병을 일으키는 A. vitis 균주간의 DNA 다양성 평가를 하기 위하여 12종류의 URP primer 적용 성을 조사한 결과 URP1F, URP2F, URP2R, URP4R, URP17R primer가 균주 간 DNA 다형성검정에 유용하였다. 국내외에서 분리한 59 A. vitis 균주를 URP-PCR 증폭하였던 바 균주간의 매우 다양한 PCR 다형성 밴드를 형성 하였으며 12 strain type으로 나눌 수 있었으며 거봉포도로부터 분리된 A. vitis 균주는 4 strain type의 비교적 단순한 유전적 다양성으로 나타났으나, 거봉이외의 다른 포도 품종이나 국외에서 도입된 A. vitis 균주는 8 strain type의 많은 유전적 다양성을 보여 거봉품종 유래 국내 균주와는 PCR 다형성 type에 있어 차이점을 보였다. URP-PCR 다형성 밴드를 집괴 분석하여 UPGMA dendrogram을 작성한 결과 7개의 대 Group으로 분류할 수 있었으며, 그룹 간에는 $62{\sim}100$%까지 다양한 유전적 유사성이 나타났다.

Evaluation of bonding efficiency between facial silicone and acrylic resin using different bonding agents and surface alterations

  • Shetty, Uttam Sadashiv;Guttal, Satyabodh Shesharaj
    • The Journal of Advanced Prosthodontics
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    • 제4권3호
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    • pp.121-126
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    • 2012
  • PURPOSE. The aim of the study was to evaluate the effect of 3 silicone primers and 3 surface characterization of acrylic resin surface on bond strength between silicone elastomer and acrylic resin. MATERIALS AND METHODS. 96 Cosmesil silicones bonded to heat-curing acrylic resin were fabricated with the dimension of $75{\times}10{\times}3$ mm. The 3 primers used in this study were G611 platinum primer, A-330 Gold platinum primer, and cyanoacrylates resin. Specimens without primer were used as control. The 3 types of surface characterization done were retentive holes with 1.5 mm in diameter and 0.5 mm deep, retentive beads of 0.6 mm diameter and the third type which was plain without any characterization. The specimens were then checked for bond strength by subjecting them to $180^{\circ}$ peel test on a universal testing machine. The obtained results were then subjected to statistical analysis using 2-way ANOVA and Scheff$\acute{e}$ multiple post hoc procedures. The statistical significance was set at 5% level of significance. RESULTS. The maximum bond strength was seen for samples in which A-330G primer was used followed by G611 primer. The control group showed the minimum bond strength. Surface characterization of retentive holes increased the bond strength considerably as compared to retentive beads and samples without any surface characterization. CONCLUSION. Within the limitations of the study, A-330G primer was more compatible with Cosmesil M511 silicone and has better bonding of Cosmesil to acrylic resin. Retentive holes made on acrylic surface increased the bond strength considerably than those without any surface characterization.

레진 시멘트와 코발트 크롬 합금의 미세인장결합강도에 다양한 프라이머들이 미치는 영향 (Effects of primers on the microtensile bond strength of resin cements to cobalt-chromium alloy)

  • 정홍택;;박진홍;신주희;이정열
    • 대한치과보철학회지
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    • 제57권2호
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    • pp.95-101
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    • 2019
  • 목적: 레진 시멘트와 코발트 크롬 합금 간의 미세인장결합강도에 다양한 프라이머들이 미치는 영향을 평가하기 위한 것이다. 재료 및 방법: 본 실험에서는 4개의 프라이머(Universal primer, Metal primer II, Alloy primer, and Metal/Zirconia primer)와 2개의 레진 시멘트(Panavia F2.0, G-CEM LinkAce)를 사용하였고, 길이 6 mm, 폭 1 mm, 두께 1 mm의 150개의 코발트 크롬 빔들이 캐스팅 과정을 통해 제작되었다. 150개의 코발트 크롬 빔들을 프라이머와 레진 시멘트의 종류에 따라 프라이머 처리를 하지 않은 대조군을 포함하여 10개 그룹으로 나누었다. 금속과 레진시멘트를 산화알루미늄($125{\mu}m$ 크기)으로 샌드블라스팅 처리한 후 실리콘 틀을 이용하여 접착시켰다. 실험 전에, 입체현미경(stereomicroscope)을 이용하여 모든 금속-레진 빔들을 검사하였고, 미세인장결합강도 실험을 시행하였다. 통계적인 평가에는 one-way ANOVA와 Tukey's test를 사용하였다. 결과: 모든 그룹들의 평균 미세인장결합강도는 20 - 28 MPa이었으며, 그룹 간에 통계적으로 유의한 차이는 없었다. Panavia F2.0과 G-CEM LinkAce 그룹 모두에서 접착 파절과 응집 파절이 동시에 나타나는 혼합 파절이 가장 흔하게 일어난 파절 양태였다. 결론: 모든 실험군들의 미세인장결합강도는 상대적으로 높았지만, 본 실험에서는 프라이머의 사용이 Panavia F2.0 및 G-CEM LinkAce 레진시멘트와 코발트 크롬 합금 사이의 미세인장결합강도를 증가시키지 않았다.

A Method for Evaluation of the Quality of DNA Microarray Spots

  • Zhang, Bao;Ma, Wen-Li;Hu, Zi-You;Shi, Rong;Song, Yan-Bin;Zheng, Wen-Ling
    • BMB Reports
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    • 제35권5호
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    • pp.532-535
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    • 2002
  • To establish a method to evaluate the quality of the printed microarray and DNA fragments' immobilization. The target gene fragments that were made with the restriction display PCR (RD-PCR) technique were printed on a superamine modified glass slide, then immobilized with UV cross-linking and heat. This chip was hybridized with universal primers that were labeled with cy3-dUTP, as well as cDNA that was labeled with cy3-dCTP, as the conventional protocol. Most of the target gene fragments on the chip showed positive signals, but the negative control showed no signal, and vice versa. We established a method that enables an effective evaluation of the quality of the microarrays.

Phytoplasma Associated with Yellowing Disease of Washingtonia sp. in Kuwait

  • Al-Awadhi, Husain A.;Montasser, Magdy S.;Suleman, Patrice;Hanif, Asma M.
    • The Plant Pathology Journal
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    • 제17권6호
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    • pp.329-335
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    • 2001
  • Yellowing disease of palms caused by phytoplasma is spreading in the Arabian Gulf region. Surveys were conducted to determine the occurrence of the disease. Electron and fluorescence microscopy, and polymerase chain reaction (PCR) techniques were used to detect the phytoplasma associated with the yellowing disease of ornamental palm Washingtonia sp. grown in Kuwait. An accumulation of phytoplasmal DNA was observed by fluorescence microscopy in phloem tissues of diseased palms. Electron microscopy showed that phytoplasma cells were primarily confined to the phloemsieve elements of tissue samples collected from infected mature palms in the field. The pathogen was identified on the basis of molecular analysis using universal and specific nested primers in PCR amplifications. Prokaryotic 16S rDNA gene was detected in amplified PCR products. Nested PCR resulted in DNA amplification of 1.2 kbp fragment. This is the first report of a phytoplasmal rDNA gene identified from the putative causal pathogen of yellows in ornamental palms in the Arabian Gulf region.

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Candidatus Phytoplasma trifolii Associated with Witches' broom of Lespedeza cyrtobotrya M.

  • Kim, Young-Hwan;Jung, Hee-Young
    • The Plant Pathology Journal
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    • 제23권2호
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    • pp.106-108
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    • 2007
  • The Symptoms of witches' broom disease caused by phytoplasma including general stunting and yellowing, were observed in leafy lespedeza (Lespedeza cyrtobotrya M.) on Doam-myeon, Pyeongchang-gun, in 2006. Based on the sequence analysis of PCR-amplified 16S ribosomal DNA and 16S-23S spacer region DNA products using universal phytoplasma primers, the phytoplasma associated with leafy lespedeza witches' broom (LLWB) disease was identified as a member of Candidatus Pytoplasma trifolii. It was most closely related to alsike clover proliferation phytoplasma (99.8% similarity, accession no. AY390261), Candidatus Pytoplasma trifolii strain. RFLP patterns generated with AluI, HpaII clearly differentiated LLWB phytoplasma from the referenced phytoplasma strains, water dropwort witches' broom, mulberry dwarf, glehni aster yellow dwarf and jujube witches' broom. This paper is the first report on Candidatus Phytoplasma trifolii in leafy lespedeza identified at a molecular level.

Analysis of Genetic Relatedness in Alternaria species Producing Host Specific Toxins by PCR Polymorphism

  • Kang, Hee-Wan;Lee, Byung-Ryun;Yu, Seung-Hun
    • The Plant Pathology Journal
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    • 제19권5호
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    • pp.221-226
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    • 2003
  • Twenty universal rice primers (URPs) were used to detect PCR polymorphisms in 25 isolates of six different Alternaria species producing host specific toxins (HST). Eight URPs could be used to reveal PCR polymorphisms of Alternaria isolates at the intra- and inter-species levels. Specific URP-PCR polymorphic bands that are different from those of the other Alternaria spp. were observed on A. gaisen and A. longipes isolates. Unweighted pair-group method with arithmetic mean (UPGMA) cluster analysis using 94 URP polymorphic bands revealed three clustered groups (A. gaisen group, A. mati complex group, and A. logipes group).

Phylogenic Relationship of Allium Species in Subgenus Rhizirideum by PCR DNA Fingerprint

  • Kim, Haeng-Hoon;Kang, Hee-Wan;Park, Yong-Jin;Baek, Hyung-Jin;Gwag, Jae-Kyun
    • 한국작물학회지
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    • 제46권4호
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    • pp.328-333
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    • 2001
  • Allium is one of the largest genera, which has more than 700 species. PCR by URP (universal rice primer) primers was carried out to get phylogenetic information on 26 species, 62 accessions of subgenus Rhizirideum. The accessions were divided into seven groups at 0.76 similarity level. A. tuberosum (Chinese chives) and A. ramosum represented high similarity of 0.91. A. montanum, A. nutans, A. senescens, A. libani, A. odorum, A. austrosibiricum, and A. narcissiflorium grouped at 0.80 similarity. Some of the wild species, such as A. prostratum, A. polyrhizum, A. odorum, and A. mongolicum, showed different band patterns according to polyploidy, occurrence of B-chromosome, collection site, and origin.

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Differentiation and Detection of Phytoplasma using PCR from Diseased Plant in Korea

  • Lee, Kui-Jae
    • Plant Resources
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    • 제3권3호
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    • pp.173-178
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    • 2000
  • This test checked jujube witches'-broom disease, sumac witches'-broom disease, paulonia witches'- broom disease, and mulberry dwarf disease whether or not they were infected by phytoplasma, using universal and specific primers. Upon treatment of DNA amplified by PCR of phytoplasma with Alu I , Hpa II and Sat I restricted enzymes, distinction of phytoplasmas was possible. Particularly, phytoplasma of each host was distinguishable by treatment of Hpa II restricted enzyme. Meanwhile, analysis of restricted enzymes of jujube witches'-broom disease showed a higher infectivity of phytoplasmas of two origins. There were a lot of relations between jujube witches'-broom disease and sumac witches'-broom disease, and between paulonia witches'-broom disease and mulberry dwarf disease.

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Little Leaf and Yellowing Symptoms on Castanea crenata are Associated with Phytoplasma in Korea

  • Eun Ju Cheong
    • Journal of Forest and Environmental Science
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    • 제39권1호
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    • pp.49-54
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    • 2023
  • For unknown reasons, a few trees in a private chestnut orchard in Icheon si, Gyunggi-do suffered leaf chlorosis and growth decline. Based on symptoms, phytoplasma was a probable cause. Leaf samples were collected from two symptomatic and non-symptomatic trees in the orchard for phytoplasma detection. An amplicon of about 1.2 bp size was obtained from both symptomatic trees by PCR with the universal 16S rDNA primers. Sequences of these amplicons were found to have 99% nucleotide sequence identity to the corresponding genomic region of 16SrIII (X-disease group). More than 100 phytoplasma isolates, such as Candidatus phytoplasma pruni, Milkweed yellows phytoplasma, Goldenrod yellows phytoplasma, Tsuwabuki witches'-broom phytoplasma, Candidatus Phytoplasma trifolii, etc. were involved in the list. Phylogenetic analysis revealed that the sequence obtained in this study closely clustered with Candidatus phytoplasma groups. While one of the amplicons shared 91% identity with the Candidatus phytoplasma castaneae, the other shared only 47%. It needs further analysis and investigation to determine the exact taxonomy. Meanwhile, based on the analysis of the sequences, chlorosis, and small leaves were associated with phytoplasma.