• Journal of the Korea Society for Simulation
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• v.20 no.1
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• pp.97-105
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• 2011

In rivers and streams, biofilms are thin layers of greenish-brown slime attached to rocks, plants, and other surfaces. Biofilms play key roles in primary production and cycling of nutrients, water quality remediation, suspended sediment removal, and energy flow to higher trophic levels. In the present study, we developed a two-dimensional cellular automata model to simulate mixed biofilms of toxin-sensitive and toxin-producing species in hydrodynamic flow. The flow was generated by a stochastic process for uniform flow and by using the Navier-Stokes equation for non-uniform flow. Minimized local rules governing reproduction and mortality of the species were executed in the self-organizing processes to elucidate interactions between toxin-producing and toxin-sensitive species in competition over nutrients. We briefly discuss the morphology of the simulated biofilm under different flow conditions.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.259-273
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• 2022

Interactions between species in a community are very complex, and they are visualized and analyzed through a food web in simple way. Food web is a network of species connected by trophic links showing energy flow from prey to predator. Various models were developed to characterize the food web in ecosystems. In this study, we classified food web models to static models such as Ecopath and dynamic models such as AQUATOX. We presented characteristics of several different types of food web models in each category, and reviewed their applications used in aquatic ecosystems. Finally, we presented issues to be considered to develop food web models.

• Journal of Ecology and Environment
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• v.36 no.2
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• pp.141-150
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• 2013

Natural zooplankton communities are composed of many different species at different trophic levels in the aquatic food web. Several researchers have reported that in mesocosm/enclosure experiments, larger cladocerans tend to be more sensitive to carbamate insecticides than smaller ones (Daphnia > Moina, Diaphanosoma > Bosmina). In contrast, results from individual-level laboratory tests have suggested that large cladoceran species are more tolerant than small species. To clarify this inconsistency, we conducted a microcosm experiment using model zooplankton communities with different species compositions, where animals were exposed to lethal (near to the 24 h LC50, concentration estimated to kill 50% of individuals within 24-h for the small cladoceran Bosmina) and lower, sublethal concentrations of carbaryl. In the experiment, population densities of the small cladocerans (Bosmina and Bosminopsis) decreased subsequent to the applications of chemical, but no impacts were observed on the large cladoceran Daphnia. Our results supported the reports of previous individual level toxicity tests, and indicated that the sensitivity of zooplankton to the insecticide was unchanged by biological interactions but the response of population can be modified by compensation of population through hatching from resting eggs and/or the persistence of insecticide in the systems.

• Korean Journal of Environmental Biology
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• v.37 no.1
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• pp.8-18
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• 2019

The objectives of this study were to analyze the influence of chemical water quality on fish guilds, pollution tolerance and the multi-metric ecological health, based on the Fish Assessment Index (FAI) in the main stream of Mangyeong River between 2009-2016. The quality of water with specific conductivity, TP, and $NH_4-N$ got worse dramatically in the down region. During the study, a total of 50 species were collected and the most dominant species was Zacco platypus. Also known as tolerant species, accounted 22.9% of the total abundances, thus indicating a trophic degradation. The downstream region (S5) had the highest number of fish external abnormalities, indicating a degradation of ecological health, based on the fish assemblages. Pearson correlation analysis indicated that relative abundance of tolerant fish species and omnivore fish species had a significant positive correlation(r>0.30, p<0.05) with values of BOD, conductivity and $NH_4-N$. Whereas, the relative abundance of the sensitive species and insectivore species had a significant negative relations (r<-0.30, p<0.001) with the parameters. The mean obtained from the multi-metric fish model, based on the FAI of all sites was 47 (n=40). This indicated a "fair condition" in the ecological health, and the downstream regions (S3-S5) were judged as "bad condition", indicating an influence of the chemical degradation on the ecological health.

• Korean Journal of Ecology and Environment
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• v.55 no.1
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• pp.60-75
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• 2022

The Bayesian algorithm model is a model algorithm that calculates probabilities based on input data and is mainly used for complex disasters, water quality management, the ecological structure between living things or living-non-living factors. In this study, we analyzed the main factors affected Korean Estuary Trophic Diatom Index (KETDI) change based on the Bayesian network analysis using the diatom community and physicochemical factors in the domestic estuarine aquatic ecosystem. For Bayesian analysis, estuarine diatom habitat data and estuarine aquatic diatom health (2008~2019) data were used. Data were classified into habitat, physical, chemical, and biological factors. Each data was input to the Bayesian network model (GeNIE model) and performed estuary aquatic network analysis along with the nationwide and each coast. From 2008 to 2019, a total of 625 taxa of diatoms were identified, consisting of 2 orders, 5 suborders, 18 families, 141 genera, 595 species, 29 varieties, and 1 species. Nitzschia inconspicua had the highest cumulative cell density, followed by Nitzschia palea, Pseudostaurosira elliptica and Achnanthidium minutissimum. As a result of analyzing the ecological network of diatom health assessment in the estuary ecosystem using the Bayesian network model, the biological factor was the most sensitive factor influencing the health assessment score was. In contrast, the habitat and physicochemical factors had relatively low sensitivity. The most sensitive taxa of diatoms to the assessment of estuarine aquatic health were Nitzschia inconspicua, N. fonticola, Achnanthes convergens, and Pseudostaurosira elliptica. In addition, the ratio of industrial area and cattle shed near the habitat was sensitively linked to the health assessment. The major taxa sensitive to diatom health evaluation differed according to coast. Bayesian network analysis was useful to identify major variables including diatom taxa affecting aquatic health even in complex ecological structures such as estuary ecosystems. In addition, it is possible to identify the restoration target accurately when restoring the consequently damaged estuary aquatic ecosystem.

• Korean Journal of Ecology and Environment
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• v.51 no.1
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• pp.86-95
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• 2018

The objective of this study was to describe the development and testing of an initial ecological health assessment model, based on the index of biological integrity (IBI) using fish assemblages, before establishing the final and currently used model for ecological health assessment, conservation and management of freshwater fish in Korea. The initial fish IBI model was developed during 2004~2006 and included 10 metrics, and in 2007 the final IBI 8-metric model was established for application to streams and rivers in four major Korean watersheds. In this paper, we describe how we developed fish sampling methods, determined metric attributes and categorized tolerance guilds and trophic guilds during the development of the multi-metric model. Two of the initial metrics were removed and the initial evaluation categories were reduced from six to four (excellent, good, fair, poor) before establishing the final national fish model. In the development phase, IBI values were compared with chemical parameters (BOD and COD as indicators of organic matter pollution) and physical habitat parameters to identify differences in IBI model values between chemical and physical habitat conditions. These processes undertaken during the development of the IBI model may be helpful in understanding the modifications made and contribute to creating efficient conservation and management strategies for stream environments to be used by limnologists and fish ecologists as well as stream/watershed managers.

• Korean Journal of Ecology and Environment
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• v.41 no.2
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• pp.228-236
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• 2008

The purpose of this study was to evaluate fish metric attributes using a model of Lentic Ecosystem Health Assessment (LEHA) and apply the model to the dataset sampled from six sites of Namyang Reservoir during October 2005$\sim$May 2006. The model was composed of 11 metries and the metric attributes were made of physical, chemical and biological parameters. Trophic composition's metrics showed that tolerant species ($M_3$, 80%) and omnivore species ($M_4$, 92%) dominated the fish fauna, indicating a biological degradation in the aquatic ecosystem. The metric of $M_7$, relative proportions of exotic species, also showed greater than 8% of the total, indicating a ecological disturbance. The average value of LEHA model was 24.3 (n= 12) in the reservoir, indicating a "poor condition" by the criteria of An and Han (2007). Spatial variation based on the model values was low (range: $21{\sim}26$), and temporal variation occurred due to a monsoon rainfall. Electrical conductivity (EC) and tropic state index of chlorophyll-$\alpha$ [TSI(CHL)] was greater in the premonsoon than the postmonsoon.

• Journal of Environmental Impact Assessment
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• v.26 no.1
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• pp.27-43
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• 2017

The objectives of the study were to evaluate fish compositions, endangered species, community structure, physical habitat, and general water quality for a preliminary environmental impact assessment of Jeokbyeok River on the road construction between two regions. Total number of species and total number of individuals, based on CPUE, were 23 and 1186, respectively. The endangered species (I, II) as the legal protection species were Pseudopungtungia nigra (79 samples) Gobiobotia brevibarba) (5) Gobiobotia macrocephala (2), indicating a requiring of endangered species conservation. In the meantime, exotic species and ecological disturbing species such as Micropterus salmoides and Lepomis macrochirus, were not present, indicating a well conserved area. According to fish community analysis, values of species diversity index were high (range: 0.788 - 1.030), and the dominance index were low (range: 0.097 - 0.183), indicating that the fish community in this area was maintained well without high dominacne by specific species. Also, fish analysis on tolerance guilds and trophic guilds showed that the proportions of sensitive species were largely exceeded the proportions of the tolerant species, while the proportions of insectivore species were largely exceeded the proportions of the omnivore species. This outcome suggests that the ecosystem was well maintained in terms of tolerance and trophic compositions (food chain). Ecological health, based on the multi-metric fish model of Fish Assessment Integrity (FAI), reflected those fish conditions. In other words, values of FAI model averaged 82.4, which means a "good condition" in the criteria of ecological health by the Minstry of Environment, Korea. In addition, general water quality and physical habitat analyses showed that the system was in good condition. Under these conditions, if the road constructions between the two regions happen in the future, inorganic suspended solids may increase in the waterbody, and this may result in indirect or direct influences on the physical habitats and food chain as well as fish compositions, so the ecological protections and prevention strategy from the soil erosion are required in the system.

• Korean Journal of Ecology and Environment
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• v.41 no.4
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• pp.512-518
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• 2008

This study were to evaluate trophic conditions, N : P ratios, and empirical relations of chlorophyll (CHL) systematically using TN, TP, and CHL values in agricultural reservoirs and drinking water supplying dams. During the study, nutrients and CHL varied depending on seasonal conditions and types of the reservoirs, but most reservoirs were diagnozed as eutrophic to hypertrophic. Mass ratios of TN : TP averaged 93.1 (range: $0.68{\sim}1342$) and about 96.6 % of the total observations (n=516) was > 17 in the N : P ratios. This result suggests that P was a potential factor limiting algal growth in the entire reservoir. Thus, TN : TP ratios were a function of phosphorus rather than nitrogen. Regression analysis of log-transformed N : P ratios against TP in DWDRs and ARs showed that ratios were linearly declined with an increase of TP ($R^2$>0.66; p<0.001). Seasonal mean CHL was minimum ($4.3{\mu}g\;L^{-1}$, range: $0.1{\sim}39.7{\mu}g\;L^{-1}$) in premonsoon, and was similar between the monsoon and postmonsoon. In contrast, one of the tremendous features was that values of CHL was greater in the ARs than DWDRs. Thus, the spatial and temporal patterns in CHL were similar to those of TP but not TN. Empirical models of CHL-TP showed that CHL variation could explain average 15.3% and 11.3% in DWDRs and ARs, respectively. Seasonal analysis of empirical models showed that CHL-TP relations were stronger in postmonsoon than those of premonsoon and monsoon.

• Journal of Physiology & Pathology in Korean Medicine
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• v.21 no.1
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• pp.117-125
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• 2007

Neuronal ischemia is a pathological process caused by a lack of oxygen (anoxia) and glucose (hypoglycemia), resulting in neuronal death. It is believed that apoptosis is one of the mechanisms involved in ischemic cell death. Neuronal apoptosis is a process characterized by nuclear DNA fragmentation, changes of plasma membrane organization. To elucidate the mechanism of neuronal death following ischemic insult and to develop neuroprotective effects of Daebowonjeon(DBWJ) against ischemic damage, in vitro models are used. In vitro models of cell death have been devloped with pheochromocytoma (PC12) cell, which have become widely used as neuronal models of oxidative stress, trophic factor, serum deprivation and chemical hypoxia. Using a special ischemic device and PC12 cultures, we investigated an in vitro model of ischemia based on combined Oxygen and Glucose Deprivation (OGD) insult, followed by reoxygenation, mimicking the pathological conditions of ischemia. In this study, Daebowonjeon rescued PC12 cells from Oxygen-Glucose Deprivation (OGD)-induced cell death in a dose-dependent manner The nuclear staining of PC12 cells clearly showed that DBWJ attenuated nuclear condensation and fragmentation which represent typical neuronal apoptotic characteristics. DBWJ also prevents the LDH release and induction of Hypoxia Inducing Factor (HIF)-1 by OGD-exposed PC12 cells. Furthermore, DBWJ reduced the activation of polyADP-ribose polymerase (PARP) by OGO-exposed PC12 cells. These results suggest that apoptosis is an important characteristic of OGD-induced neuronal death and that oriental medicine, such as DBWJ, may prevent PC12 cell from OG D-induced neuronal death by inhibiting the apoptotic process.