• 유체기계공업학회:학술대회논문집
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• 2006.08a
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• pp.383-386
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• 2006

In this study, we propose a new fast algorithm for calculating short range forces in molecular dynamics, This algorithm uses a new hierarchical tree data structure which has a high adaptiveness to the particle distribution. It can divide a parent cell into k daughter cells and the tree structure is independent of the coordinate system and particle distribution. We investigated the characteristics and the performance of the tree structure according to k. For parallel computation, we used orthogonal recursive bisection method for domain decomposition to distribute particles to each processor, and the numerical experiments were performed on a 32-node Linux cluster. We compared the performance of the oct-tree and developed new algorithm according to the particle distributions, problem sizes and the number of processors. The comparison was performed sing tree-independent method and the results are independent of computing platform, parallelization, or programming language. It was found that the new algorithm can reduce computing cost for a large problem which has a short search range compared to the computational domain. But there are only small differences in wall-clock time because the proposed algorithm requires much time to construct tree structure than the oct-tree and he performance gain is small compared to the time for single time step calculation.

• Journal of KIISE:Information Networking
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• v.35 no.6
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• pp.482-496
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• 2008

Packet classification in the Internet routers requires multi-dimensional search for multiple header fields for every incoming packet in wire-speed, hence packet classification is one of the most important challenges in router design. Hierarchical packet classification is one of the most effective solutions since search space is remarkably reduced every time a field search is completed. However, hierarchical structures have two intrinsic issues; back-tracking and empty internal nodes. In this paper, we propose a new hierarchical packet classification algorithm which solves both problems. The back-tracking is avoided by using the set-pruning and the empty internal nodes are avoided by applying the binary search tree. Simulation result shows that the proposed algorithm provides significant improvement in search speed without increasing the amount of memory requirement. We also propose an optimization technique applying controlled rule copy in set-pruning.

• Journal of Communications and Networks
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• v.4 no.3
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• pp.246-255
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• 2002

Constrained minimum Steiner tree (CMST) problem is a key issue in multicast routing with quality of service (QoS) support. Bounded shortest path algorithm (BSMA) has been recognized as one of the best algorithms for the CMST problem due to its excellent cost performance. This algorithm starts with a minimumdelay tree, and then iteratively uses a
-shortest-path (KSP) algorithm to search for a better path to replace a “superedge” in the existing tree, and consequently reduces the cost of the tree. The major drawback of BSMA is its high time complexity because of the use of the KSP algorithm. For this reason, we investigate in this paper the possibility of more efficient implementations of BSMA by using different methods to locate the target path for replacing a superedge. Our experimental results indicate that our methods can significantly reduce the time complexity of BSMA without deteriorating the cost performance.

• Journal of the Korean Operations Research and Management Science Society
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• v.19 no.1
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• pp.153-168
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• 1994

This paper is concerned with the development of tree-search algorithm for the exact solution to the vehicle problem (VRP), where set of vehicles of known capacity based at depot, have to be routed in order to supply customers with known requirements. When is required is to design routes, so that the total cost (i. e. total route length or time duration, ect.) is minimized. For obtianing the exact solution, the most important factors are the value of bound and branching strategy. Using the bound based on with bound ascent procedures from subgradient and state-space ascents, the incorporation of bounds into tree search algorithm to solve the problem is shown. Computational results of the corresponding algorithm show that VRPs with up to 40 customers can be solved optimally with this algorithm.

• Journal of the Institute of Electronics Engineers of Korea TC
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• v.41 no.8
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• pp.55-62
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• 2004

This paper proposes and analyzes two anti-collision algorithms in Ubiquitous ID system. We mathematically compares the performance of the proposed algorithms with that of binary search algorithm slotted binary tree algorithm using time slot, and bit-by-bit binary tree algorithm proposed by Auto-ID center. We also validated analytic results using OPNET simulation. Based on analytic result comparing the proposed Modified bit-by-bit binary tree algorithm with bit-by-bit binary tree algorithm which is the best of existing algorithms, the performance of Modified bit-by-bit binary tree algorithm is about 5% higher when the number of tags is 20, and 100% higher when the number of tags is 200. Furthermore, the performance of proposed Enhanced bit-by-bit binary tree algorithm is about 335％ and 145% higher than Modified bit-by-bit binary tree algorithm for 20 and 200 tags respectively.

• Journal of Institute of Control, Robotics and Systems
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• v.12 no.10
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• pp.1044-1049
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• 2006

Multiple sequence alignment is a method to compare two or more DNA or protein sequences. Most of multiple sequence alignment tools rely on pairwise alignment and Smith-Waterman algorithm to generate an alignment hierarchy. Therefore, in the existing multiple alignment method as the number of sequences increases, the runtime increases exponentially. In order to remedy this problem, we adopted a parallel processing suffix tree algorithm that is able to search for common subsequences at one time without pairwise alignment. Also, the cross-matching subsequences triggering inexact-matching among the searched common subsequences might be produced. So, the cross-matching masking process was suggested in this paper. To identify the function of the clusters generated by suffix tree clustering, BLAST and CDD (Conserved Domain Database)search were combined with a clustering tool. Our clustering and annotating tool consists of constructing suffix tree, overlapping common subsequences, clustering gene sequences and annotating gene clusters by BLAST and CDD search. The system was successfully evaluated with 36 gene sequences in the pentose phosphate pathway, clustering 10 clusters, finding out representative common subsequences, and finally identifying functional domains by searching CDD database.

• The KIPS Transactions:PartD
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• v.11D no.4
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• pp.809-822
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• 2004

In this paper, we propose a concurrency control algorithm based on R-tree for spatial database management system. The previous proposed algorithms can't prevent problem that search operation is to be blocking during update operations. In case of multidimensional indexes like R-tree, locking of update operations may be locked to several nodes, and splitting of nodes have to lock a splitting node for a long time. Therefore search operations have to waiting a long time until update operations unlock. In this paper we propose new algorithms for lock-free search operation. First, we develop a new technique using a linked-list technique on the node. The linked-list enable lock-free search when search operations search a node. Next, we propose a new technique using a version technique. The version technique enable lock-free search on the node that update operations is to be splitting.

• Journal of KIISE:Computer Systems and Theory
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• v.29 no.2
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• pp.87-93
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• 2002

A new approach of constructing a suffix tree $T_s$for the given string S is to construct recursively a suffix tree $ T_0$ for odd positions construct a suffix tree $T_e$ for even positions from $ T_o$ and then merge $ T_o$ and $T_e$ into $T_s$ To construct suffix trees for integer alphabets in linear time had been a major open problem on index data structures. Farach used this approach and gave the first linear-time algorithm for integer alphabets The hardest part of Farachs algorithm is the merging step. In this paper we present a new and simpler merging algorithm based on a coupled BFS (breadth-first search) Our merging algorithm is more intuitive than Farachs coupled DFS (depth-first search ) merging and thus it can be easily extended to other applications.

• The Journal of Korean Institute of Communications and Information Sciences
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• v.38A no.9
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• pp.782-791
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• 2013

This paper proposes the location estimation techniques of distributed targets with the multi-sensor data perceived through IR sensors of the military robots. In order to match up targets with measured azimuths, we apply the maximum likelihood (ML), depth-first, and breadth-first tree search algorithms, in which we use the measured azimuths and the number of pixels on IR screen for pruning branches and selecting candidates. After matching up targets with azimuths, we estimate the coordinate of each target by obtaining the intersection point of the azimuths with the least square error (LSE) algorithm. The experimental results show the probability of missing target, mean of the number of calculating nodes, and mean error of the estimated coordinates of the proposed algorithms.

• Journal of Korea Game Society
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• v.16 no.4
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• pp.79-86
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• 2016

Monte-Carlo Tree Search(MCTS) is a best-first tree search algorithm and has been successfully applied to various games, especially to the game of Go. We evaluate the performance of MCTS playing against each other in the game of Tic-Tac-Toe. It reveals that the first player always has an overwhelming advantage to the second player; and we try to find out the reason why the first player is superior to the second player in spite of the fact that the best game result should be a draw. Since MCTS is a statistical algorithm based on the repeated random sampling, it cannot adequately tackle an urgent problem that needs a strategy, especially for the second player. For this, we propose a strategic MCTS(S-MCTS) and show that the S-MCTS player never loses a Tic-Tac-Toe game.