• Korean Journal of Plant Taxonomy
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• v.48 no.3
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• pp.172-184
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• 2018

We examined the floral morphology of 15 taxa of five genera (Cynanchum, Marsdenia, Metaplexis, Tylophora, and Vincetoxicum) in Korean Asclepiadoideae using a stereoscopic and scanning electronic microscope to clarify and describe the floral characteristics. In this study, the corolla and corona types, the types of corona lobes, appendages on the corona lobes, and the apex shape of the style head are considered as diagnostic characteristics at the generic level. The genus Vincetoxicum, which is treated as a synonym of the genus Cynanchum in Korea, is distinguished from Cynanchum by the interstaminal part on the corona, fleshy and mainly triangular or ellipsoid corona lobes, and various corolla colors. In Cynanchum, various corona types have been observed, while Vincetoxicum have similar corona types among the taxa. In addition, the main floral characteristics at the species level were as follows: flowering time, inflorescence, corolla color, trichomes on the corolla surfaces, apex shape of the corona lobe, and trichomes on the ovary. This study presents the taxonomic importance of floral morphology by providing descriptions and diagnostic characteristics among the genera and species investigated.

• Korean Journal of Plant Taxonomy
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• v.48 no.2
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• pp.123-128
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• 2018

Earlier taxonomic studies of Korean Scutellaria reported a new record of Scutellaria hastifolia L. in Korea based on three herbarium sheets. During a reexamination of these specimens, we found that the leaf characters of these specimens differ from those in the type specimen of S. hastifolia. Based on a literature survey and confirmation of the type specimen, the specimens identified as S. hastifolia thus far were a misidentification of S. barbata D. Don. S. hastifolia is clearly different from S. barbata by single conspicuous teeth on both sides of the leaf margins and larger leaves. In addition to the distribution sites of the three specimens used in the previous study, a distribution site of the S. barbata was newly found in the southern part of Korea. In this study, we report a new distribution of S. barbata in Korea, correct a previous report of S. hastifolia, describe the morphological characters of S. barbata, and suggest a taxonomic key to Korean Scutellaria including S. barbata.

• Journal of Plant Biotechnology
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• v.47 no.4
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• pp.289-297
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• 2020

The genetic diversity of two subpopulations of Corynandra chelidonii, one of terrestrial and the other of aquatic environments, was measured with molecular markers, such as start codon targeted (SCoT), inter simple sequence repeats (ISSR), and random amplification of polymorphic DNA (RAPD). The traditional morphological traits such as habitat, habit, leaf morphology, the colour of the sepals and petals, number of stamens, and seed morphology formed the base for their realization as two varieties, C. chelidonii var. pallae and C. chelidonii var. chelidonii. The polymorphism between the two variants was 100% with the primers SCoT-2 and OPA-1 and 4, while maximum polymorphism was detected with ISSR-2, SCoT-3, and OPA-3. The study used, for the first time, more than one molecular marker to assess the genetic variation underscoring the morphological variation in Corynandra chelidonii (L.f.) Cochrane & Iltis. The study justifies the recognition of the two subpopulations of Corynandra chelidonii from aquatic and terrestrial environments as two distinct varieties, C. chelidonii var. pallae (Reddy & Raju) V.S.Raju and C. chelidonii var. chelidonii, respectively, based on the traditional taxonomic evidence.

• Journal of Species Research
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• v.11 no.4
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• pp.335-342
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• 2022

Through the 'Discovery of Korean Indigenous Species' project hosted by the National Institute of Biological Resources (NIBR), new or unrecorded species of various protozoans inhabiting the Korean Peninsula have been discovered. Samples were collected from marine, freshwater, and soil habitats in South Korea and all species were identified and reviewed by experts working on the respective taxonomic group. This study includes 17 unrecorded Korean protozoan species discovered through this project, which belong to four phyla: Amoebozoa Lühe, 1913, Cercozoa Cavalier-Smith, 1998, Euglenozoa Cavalier-Smith, 1981, and Ciliophora Doflein, 1901. Among them, three families (Rhogostomidae Dumack et al., 2017, Parauronematidae Small and Lynn, 1985, and Cyclidiidae Ehrenberg, 1838) and three genera (Rhogostoma Belar, 1921, Parauronema Thompson, 1967, and Cyclidium Müller, 1773) were reported for the first time in Korea. Unlike the previous paper of 2017, this study provides a comprehensive taxonomic account of each species (e.g., species name, collection site, synonyms, specimen vouchers, diagnoses, and figures). Additionally, all the species were assigned Korean names.

• Genomics & Informatics
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• v.21 no.4
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• pp.49.1-49.11
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• 2023

Recent advances in sequencing technologies and platforms have enabled to generate metagenomics sequences using different sequencing platforms. In this study, we analyzed and compared shotgun metagenomic sequences generated by HiSeq3000 and BGISEQ-500 platforms from 12 sediment samples collected across the Norwegian coast. Metagenomics DNA sequences were normalized to an equal number of bases for both platforms and further evaluated by using different taxonomic classifiers, reference databases, and assemblers. Normalized BGISEQ-500 sequences retained more reads and base counts after preprocessing, while a slightly higher fraction of HiSeq3000 sequences were taxonomically classified. Kaiju classified a higher percentage of reads relative to Kraken2 for both platforms, and comparison of reference database for taxonomic classification showed that MAR database outperformed RefSeq. Assembly using MEGAHIT produced longer assemblies and higher total contigs count in majority of HiSeq3000 samples than using metaSPAdes, but the assembly statistics notably improved with unprocessed or normalized reads. Our results indicate that both platforms perform comparably in terms of the percentage of taxonomically classified reads and assembled contig statistics for metagenomics samples. This study provides valuable insights for researchers in selecting an appropriate sequencing platform and bioinformatics pipeline for their metagenomics studies.

• Korean Journal of Environmental Biology
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• v.38 no.1
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• pp.165-178
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• 2020

This study investigated the exotic mammals introduced to Korea to present the basic data necessary for ecological risk assessment and the establishment of an alien species management database. For this purpose, a list of alien mammals introduced to Korea was established by investigating alien mammals introduced for zoo exhibits purposes, alien mammals in breeding environments traded between individuals, and alien mammals introduced into nature. A total of 163 taxa were identified as alien mammals introduced to Korea. There were 139 taxonomic groups of ornamental alien mammals, including 11 orders, 44 families, 129 species and 10 subspecies; 28 taxonomic groups of alien mammals traded between individuals, including five orders and 19 families; and eight taxonomic groups of alien mammals introduced into nature, including four orders, seven families, seven species, and one subspecies. For the effective management of alien mammals introduced to Korea, it is important to collect basic information, such as a list of all species introduced, their populations, and introduced areas. It is also necessary to apply proactive management policies according to the degree of potential risk by preemptively evaluating the ecological risks that may arise from the introduction of alien species into natural ecosystems. For the eight taxonomic groups of Capra hircus, Cervus nippon taiouanus, Felis catus, Myocastor coypus, Oryctolagus cuniculus, Ondatra zibethicus, Ovis aries, and Rattus norvegicus identified to be introduced into the natural ecosystem of Korea, the provision of proliferation control measures at the national level, continuous monitoring of changes in diffusion trends, and immediate response based on the degree of change are required.

• Korean Journal of Microbiology
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• v.51 no.1
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• pp.81-85
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• 2015

Since the banning of antibiotic growth promoters (AGPs), the death of livestock has been increased, thus there is a strong demand for AGP-alternatives. Modulation of gut microbiota has been reported to affect host physiological functions and suggested to be a novel approach for developing AGP-alternatives. However, little has been understood about livestock gut microbiota compared to that of humans. We conducted preliminary study provide fundamental information regarding to regional differences in swine gut microbiota. Swine fecal samples were obtained from farms in Jeju (n=40), Gwangju (n=28), and Haenam (n=30). MiSeq was used to sequence 16S rRNA V4 region, and Mothur pipeline (Schloss et al., 2009) was used for data processing. A total of 5,642,125 reads were obtained and 3,868,143 reads were remained after removing erroneous reads. Analysis of taxonomic composition at the phylum level indicated greater abundance of Firmicutes among Jeju swine, and cluster analysis of distribution of operational taxonomic units also showed regional differences among swine gut microbiota. In addition, correlation analysis between non-metric multidimensional scaling and abundance of phyla suggested that the phyla Actinobacter, Verrucomicrobia, Firmicutes, and Fibrobacteres were driving factors for the regional differences. Livestock gut microbiota may be affected by diet and practices in farms. Our results indicated significant regional differences in swine gut microbiota, suggesting that future livestock gut microbiota studies should be designed with the regional differences in mind.

• Korean Journal of Plant Taxonomy
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• v.38 no.4
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• pp.477-502
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• 2008

Morphological characters of inflorescence, spikelet, rachilla, glume, lemma and palea about 17 taxa of Korean Poa L. were investigated to evaluate their taxonomic significances. The bulbil present or not, inflorescence shape, callus shape of lemma and surface shape of palea were thought to be the subgenus characters. The keels shapes of palea, the number of lower glume, lateral nerve shape of lemma were thought to be the section characters. The number of floret, rachilla present or not, the number of lower glume, nerve shape of glume, surface shape of lemma were thought to be the species characters. Consequently, 17 taxa of the Korean Poa L. is classified into 3 subgenus (Ochlopoa, Stenopoa, Stenopoa), 7 section(Arenariae, Ochlopoa, Homalopoa, Poa, Pandemos, Tichopoa, Stenopoa). 6 taxa, P. ullungdoensis, P. takeshimana and P. matsumurae, P. nipponica, P. radula, P. viridula, not included in the existing classification system, were suggested to their taxonomic category in infragenic rank, and P. nemoralis, had been included in section Stenopoa of subgenus Stenopoa, was proposed to move to section Poa of subgenus Poa. P. ullungdoensis, reported as new species in 1955, was grasped its taxonomic identity.

• Journal of the Korean Institute of Traditional Landscape Architecture
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• v.29 no.1
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• pp.131-141
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• 2011

This study, as a purpose of base study for landscape redevelopement of Seowon, pointed out problems of planting patterns in each sector and suggested an alternative through analyzing old literature, complete enumeration survey in each sector and taking aerial images. the conclusions drawn from this study are as follows. A Pilam Seowon(historic site no 242) is located in a Pyungya-Sanrok(plain and mountain) district in Jangsung-gun and has Junhak-Humyo(Study room in the front and Shirne in the back) type. 23 taxonomic group of arbor, 6 taxonomic group of shrub and 5 taxonomic group of flowers are planted high-densitily in limited flat surface. It can be classified into being planted by family and being planted through landscape redevelopement in 1980s. Korean traditional trees are planted in this area like Pinus densiflora, Juniperus chinensis L., Thuja orientalis L., Zelkova serrato Makino, Sophora japonica L., Lagerstroemia indica, Prunus mume include Ginkgo biloba which is old big tree and is registered in Jangsung-gun as protected trees. The tea tree in this area was introduced from wild tea plantation in Yonhwa moutain and was planted. From now on, we have to pay consideration a form management of planted trees in the historical area, rearrangement of plant density due to over planting, removal of alien trees like Pinus bungeana and Canna generalisa, prevention a dwarfishness of main area due to over planting in outside facilities, recovery a alienation among each planting area, and planting concept from plants drawings on wall of buildings can be suggested. The implications of this case study is that introduction of over planting can make more problems like losing sense of place. Therefore, we must do a actual state survey on traditional landscape area like Seowon from preservation point of view.

• Korean journal of applied entomology
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• v.52 no.2
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• pp.85-91
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• 2013

A diverse range of taxonomic confusions are brought forth since past taxonomic information including major errors following its initial provision of some uncertain information has repeatedly been applied to Korean Vespidae in its identification. Thus, this study, which made a final summarization of research on Vespidae, provided the list of Korean Vespidae determined except for Eumeninae, with their distributional data. A total of 30 species (including 3 subspecies) belonging to 5 genera of 2 subfamilies are listed: subfamily Vespinae (3 genera/ 18 species) and subfamily Polistinae (2 genera/ 12 species).