• Plant Resources
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• v.8 no.2
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• pp.135-144
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• 2005

RAPD analysis was performed to discuss the taxonomic status and phylogenetic relationships among the tribe Forsythieae and related groups. Two hundred and eighteen scorable polymorphic bands were detected from fourteen oligonucleotide primers. From the results of RAPD analysis by Nei and Li's genetic distance, each individuals of Abeliophyllum distichum showed high genetic relationships with ranging from 0.085 to 0.301, also the genus Forsythia showed from 0.042 to 0.655 among the species and populations. But, Abeliophyllum and Forsythia showed distinct dissimilarity, ranging from 0.610 to 1.258. And genetic differences among the population of Forsythia were 0.042 in F. koreana, 0.275 in F. saxatilis, 0.275 in F. ovata, 0.279 in F. nakaii, and 0.249 in F. viridissima. The UPGMA phenogram of tribe Forsythieae based on the results of RAPD analysis were presented that Abeliophyllum is distinct genus different from Forsythia. NJ tree which applied as the outgroups Fontanesia and Jasminum was derived, and it showed that tribe Forsythieae might be a monophyletic group. The genus Fontanesia was showed as sister group of tribe Forsythieae. Among the populations of taxa in Forsythia, F. koreana and F. saxatilis were more closely related, and F. ovata and F. nakaii were very closely related to F.japonica. And Fontanesia was the sister group of tribe Forsythieae.

• Animal Systematics, Evolution and Diversity
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• v.36 no.4
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• pp.347-353
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• 2020

Although sea slaters Ligia have a significant role in rocky shore habitats, their taxonomic entities have not been clearly understood. In this study, we investigated whether genetic variation inferred from a nuclear genetic marker, namely amplified fragment length polymorphism (AFLP), would conform to that of a mitochondrial DNA marker. Using both the mitochondrial DNA marker and the AFLP marker amplified by the six selective primer sets, we analyzed 95 Ligia individuals from eight locations from East Asia. The direct sequencing of mitochondrial 16S rRNA gene revealed three distinct genetic lineages, with 9.8-11.7 Kimura 2-parameter genetic distance. However, the results of AFLP genotyping analysis with 691 loci did not support those of mitochondrial DNA, and revealed an unexpectedly high proportion of shared polymorphisms among lineages. The inconsistency between the two different genetic markers may be explained by difference in DNA evolutionary history, for example inheritance patterns, effective population size, and mutation rate. The other factor is a possible genomic island of speciation, in that most of the genomic parts are shared among lineages, and only a few genomic regions have diverged.

• Journal of Species Research
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• v.10 no.3
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• pp.276-286
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• 2021

We performed a taxonomic study on Korean Pacificincolidae (Bryozoa: Cheilostomata) with the materials collected from 39 localities(ports, intertidal and subtidal zones) in the coastal seas of South Korea from 1981 to 2020. Korean Mucronella perforata reported by Rho and Seo (1985) turned out to be not Pacificincola perforata, but Primavelans glabricollaris n. sp. based on morphological data. Pacificincola perforata, which was transferred from Mucronella perforata (Okada and Mawatari, 1937), is also added to the Korean fauna. This study is the first to use mitochondrial 16S rRNA gene sequences to study the family Paficincolidae. The NJ analysis also reconfirmed the validity of the genus Primavelans, established on the basis of the early astogeny by De Blauwe in 2006, with the mitochondrial 16S rRNA sequences. The inter-genetic distance among two species belong to the Pacificincolidae was in the range of 13.39±1.83 mm. Primavelans glabricollaris n. sp. is thus distinguished from Pacificincola perforata with both morphological and molecular data. A new species, Primavelans glabricollaris, and a new record, Pacificincola perforata from Korea are herein described in detail and illustrated by scanning electron microscopy.

• Mycobiology
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• v.50 no.2
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• pp.132-141
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• 2022

Amylomyces rouxii is commonly found as amylolytic fungi in tapai fermentation. However, its diversity is rarely reported despite being often used for food production in Southeast Asia. This research aims to analyze the genetic diversity and the distribution pattern of A. rouxii from Ragi tapai in Java Island, Indonesia. We isolated the fungus from samples obtained from Ragi tapai producing centers in Bandung, Sumedang, Muntilan, Blora, Yogyakarta, and Bondowoso. The obtained isolates were molecularly identified based on the ribosomal regions ITS1/ITS2 and D1/D2, then analyzed for phylogenetic tree reconstruction, genetic distance, genetic variation, and haplotype networking. Six isolates showed specific morphological traits of A. rouxii. However, phylogenetic tree reconstruction on the ribosomal genes showed that the isolates were grouped into two different clades related to two species. Clade A included BDG, SMD, and MTL isolates related to A. rouxii, whereas clade B included YOG, BLR, and BDS isolates related to Mucor indicus. The genetic distances between clades for ITS1/ITS2 and D1/D2 were 0.6145 and 0.1556, respectively. In conclusion, we confirmed the genetic diversity of molds from Ragi tapai in Java Island and showed that the isolates are not only related to A. rouxii as reported before.

• Animal Systematics, Evolution and Diversity
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• v.11 no.4
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• pp.417-434
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• 1995

Three species (0. kinbergi, 0. sarsi and 0 . sarsi vadicola) of the genus Ophiura (Echinodermacta: Ophiuroidea) were sampled from the various localities of Korean waters (Kyonggi Bay in March and September, 1989 and February, 1994; Yellow Sea in September and October, 1992; Southern Sea and Korean Strait in May, 1992; and eastern coasts adjacent to Kangnung in April, July, October, 1993 and January, 1994). Results of the examination of 250 Operational Taxonomical Units (OTUs) are presented based on the 20 morphometric variables to evaluate their taxonomic characters and positions. In cluster analysis, 250 OTUs were divided into 3 phenons (0. kinbergi, 0 . sarsi and 0 . sarsi vadicola) at the Euclidean distance levels of 6.84 and 2 phenons (a phenon composed of 0 . sarsi and 0 . sarsi vadicola and the other of 0. kinbergi) at 7.50. Stepwise discriminant analysis was used in order to produce a good discrimination model and 13 morphological characters (the total number of comb papillae, the number of primary comb papillae and shape of comb papillae (2). etc.) were extracted. The results of canonical discriminant analysis illustrated clear distinction among 3 phenons by the distance of 8.26 between 0 . sarsi and 0. sarsi vadicola, 24.24 between 0 . kinbergi and 0. sarsi vadicola and 21.63 between 0 . kinbergi and 0 . sarsi.

• Journal of Korean Society of Forest Science
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• v.59 no.1
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• pp.1-8
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• 1983

Classification on the group of Salix pseudo-lasiogyne growing in Korea, was conducted using cluster analysis, factor analysis, and principal component analysis. Thirty-six characters(Table 2) of the 5 basis species were measured. The phenograms and ordination plot showing the relationships between the species were made by applying the cluster analysis and principal component analysis. Five important factors, such as leaf blade width, number of right serration, angle of leaf apex, number of flowers in an ament, and the ratio of petiole length to width, were inferred from the rotated factor matrix, and their state values were presented in polygonal diagram. Salix pseduo-lasiogyne and S. babylonica were similarly correlated and linked in one group, S. dependens and S. matsudana for tortuosa were secondarily linked in the other group. S. koreensis appeared as an aliemated species from each of the two groups.

• Animal Systematics, Evolution and Diversity
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• v.28 no.2
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• pp.133-136
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• 2012

The objective of this study was to determine the degree of mitochondrial DNA (mtDNA) divergence between two subspecies of $Mustela$ $sibirica$ from Korea ($M.$ $s.$ $coreanus$ on the Korean Peninsula and ($M.$ $s.$ $quelpartis$ on Jeju Island) and to examine the taxonomic status of ($M.$ $s.$ $quelpartis$. Thus, we obtained complete sequences of mtDNA cytochrome $b$ gene (1,140 bp) from the two subspecies, and these sequences were compared to a corresponding haplotype of ($M.$ $s.$ $coreanus$, downloaded from GenBank. From this analysis, it was observed that the sequences from monogenic ($M.$ $s.$ $quelpartis$ on Jeju Island were identical to the sequences of four ($M.$ $s.$ $coreanus$from four locations across the Korean Peninsula, and that the two subspecies formed a single clade; the average nucleotide distance between the two subspecies was 0.26% (range, 0.00 to 0.53%). We found that the subspecies $quelpartis$ is not genetically distinct from the subspecies $coreanus$, and that this cytochrome $b$ sequencing result does not support the current classification, distinguishing these two subspecies by pelage color. Further systematic analyses using morphometric characters and other DNA markers are necessary to confirm the taxonomic status of ($M.$ $s.$ $quelpartis$.

• Korean Journal of Plant Taxonomy
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• v.37 no.4
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• pp.447-476
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• 2007

The pollen and revisional study aimed for an elucidation of taxonomic delimitation and relationship of Thalictrum taxa in Korea, especially among the morphologically confused taxa. Pollen grains of 63 populations of 17 taxa were investigated by light and scanning electron microscopy. Although pollen morphology was not useful for the species classification, it revealed a tendency in which Sects. Physocarpum, Erythrandra and Tripterium having broad filaments and round-tipped anthers possess closer distance between adjacent pores, less echinus number per unit area, smaller pollen, and higher echinus, on the contrary to Sects. Omalophysa, Camptonotum and Thalictrum having filiform filaments and acute-acuminate- or more or less round-tipped anthers. The palynological result did not support several section system by Tamura (1992) but one section system by Lecoyer (1885). If a infrasectional system is needed, it was suggested that the system dividing the section into two (Clauiformes and Filiformes sensu Lecoyer) would be natural on the basis of stamen and pollen characteristics. Revisional study found out that 17 taxa(16 species) of Thalictrum are distributed in Korean including T. filimentosum which presence in Korea was not confirmed.

• Korean Journal of Plant Resources
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• v.20 no.4
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• pp.298-303
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• 2007

To examine taxonomic relationships among 24 leaf mustard allies (Brassica juncea) derived from domestic collections and introduced species, principal component analysis (PCA) and cluster analysis on 16 morphological characters were carried out. Of 16 characters, total fresh weight, total dry weight, shoot fresh weight and leaf length were useful characters for the understanding of taxonomic relationships among them. Cluster analysis using scores of the principal components indicated that 24 leaf mustards could be grouped into domestic collections and introduced species at 1.0 of average distance in UPGMA. Moreover, in experiment of $F_{1}$ recombination test, heterosis appeared greatly in Sanchiohbachirimen takana A ${\times}$ Akaohba takana, Goheung namyang ${\times}$ Sanchiohbachirimen takana B, and Goheung namyang ${\times}$ Akaohba takana cross combinations. Sanchiohbachirimen takana A and Akaohba takana have a high parent combining ability for breeding cultivars using cytoplasmic male sterility.

• Korean Journal of Ecology and Environment
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• v.55 no.3
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• pp.212-220
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• 2022

An estuary is a water ecosystem with a high abundance of the species diversity, due to a variety of complex physicochemical factors of the area where freshwater and ocean mixed. The identification of Corbicula species in the estuary environments is difficult because of various morphological characteristics. In this study, we provide taxonomic information on Corbicula species with taxonomic difficulties using morphological and genetic analysis. This study was conducted on clams from the Seomjin River-Gwangyang Bay, one of the major production area of marsh clam in Korea. As a result, we characterized Cytocrome C Oxidase subunit I (COI) sequences of the Corbicula. The 636 bp nucleotide sequences of COI have 98% homology among Corbicula species collected from 2 sites of Seomjin River-Gwangyang Bay. The phylogenetic analysis with 17 species of Corbicula indicated that most of the species collected from Seomjin River-Gwangyang Bay were brackish water clam (Corbicula japonica), and only one Asian clam (Corbicula fluminea). The evolutionary distance between C. japonica and C. fluminea was less than 0.003. Therefore, it was confirmed that C. japonica is phylogenetically closely related to C. fluminea. In 9 species of Cyrenidae, phylogenetic tree was classified into three lineages. These results will be used as an important data for an identification of clam species by providing genetic information for Corbicula species with a morphological diversity.