• Title/Summary/Keyword: sum of squares

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Estimation of environmental effects and genetic parameters of carcass traits on Chikso (Korean brindle cattle)

  • Park, Byoungho;Choi, Tae Jeong;Park, Mi Na;Oh, Sang-Hyon
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.4
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    • pp.525-530
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    • 2020
  • Objective: The purpose of this study was i) to identify the characteristics of carcass traits in Chikso by gender, region, age at slaughter, and coat color using the carcass data collected from the nationwide pedigree information and coat color investigation, and ii) to estimate genetic parameters for breed improvement. Methods: A linear model was used to analyze the environmental effects on the carcass traits and to estimate genetic parameters. Analysis of variance was performed using TYPE III sum of squares for the unbalanced data provided by the general linear model procedure. Variance components for genetic parameters was estimated using REMLF90 of the BLUPF90 family programs. Results: Phenotypic performance of carcass weight (CW), eye muscle area (EMA), and backfat thickness (BF) in Chikso were lower than those of Hanwoo. This is a natural outcome because Hanwoo have undergone significant efforts for improvement at the national level, a phenomenon not observed in Chikso. Another factor influencing the above outcome was the smaller population size of Chikso compared to that of Hanwoo's. The heritabilities of CW, EMA, BF, and marbling score in Chikso were estimated as 0.50, 0.37, 0.35, and 0.53, respectively, which were was higher than those of Hanwoo. Conclusion: Based on the genetic parameters that were estimated in this study, it is expected that the carcass traits will improve when the livestock research institutes at each province conduct small-scale performance tests and the semen is provided to farmers after selecting proven bulls using the state-of-art selection technique such as genomic selection.

Additive Main Effects and Multiplicative Interaction Analysis of Host-Pathogen Relationship in Rice-Bacterial Blight Pathosystem

  • Nayak, D.;Bose, L.K.;Singh, S.;Nayak, P.
    • The Plant Pathology Journal
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    • v.24 no.3
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    • pp.337-351
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    • 2008
  • Host-pathogen interaction in rice bacterial blight pathosystem was analyzed for a better understanding of their relationship and recognition of stable pathogenicity among the populations of Xanthomonas oryzae pv. oryzae. A total number of 52 bacterial strains isolated from diseased leaf samples collected from 12 rice growing states and one Union Territory of India, were inoculated on 16 rice varieties, each possessing known genes for resistance. Analysis of variance revealed that the host genotypes(G) accounted for largest(78.4%) proportion of the total sum of squares(SS), followed by 16.5% due to the pathogen isolates(I) and 5.1% due to the $I{\times}G$ interactions. Application of the Additive Main effects and Multiplicative Interaction(AMMI) model revealed that the first two interaction principal component axes(IPCA) accounted for 66.8% and 21.5% of the interaction SS, respectively. The biplot generated using the isolate and genotypic scores of the first two IPCAs revealed groups of host genotypes and pathogen isolates falling into four sectors. A group of five isolates with high virulence, high absolute IPCA-1 scores, moderate IPCA-2 scores, low AMMI stability index '$D_i$' values and minimal deviations from additive main effects displayed in AMMI biplot as well as response plot, were identified as possessing stable pathogenicity across 16 host genotypes. The largest group of 27 isolates with low virulence, small IPCA-1 as well as IPCA-2 scores, low $D_i$ values and minimal deviations from additive main effect predictions, possessed stable pathogenicity for low virulence. The AMMI analysis and biplot display facilitated in a better understanding of the host-pathogen interaction, adaptability of pathogen isolates to specific host genotypes, identification of isolates showing stable pathogenicity and most discriminating host genotypes, which could be useful in location specific breeding programs aiming at deployment of resistant host genotypes in bacterial blight disease control strategies.

Clinical Study for Characteristics of Heart Rate Variability in Hwabyung Patients (화병 환자의 심학변이도 특성에 대한 임상적 연구)

  • Bae, Eun-Joo;Kim, Dong-Hyun;Rheu, Kyung-Hwan;Park, Seong-Uk;Yoon, Seong-Woo;Ko, Chang-Nam
    • The Journal of Internal Korean Medicine
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    • v.26 no.4
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    • pp.844-852
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    • 2005
  • Objectives : Through spectral analysis of heart rate variability(HRV) to study autonomic nervous system dysfunction of Hwabyung, culture related disease in Korea. Methods : HRV of 18 patients diagnosed as Hwabyung was measured against 13 healthy controls. HRV was measured by SA-2000p(Mediocre, Korea) for five minutes after 5 minutes resting. Results : 1. In time domain analysis, mean pulse rate(PRT) of in Hwabyung group was significantly higher than healthy controls. Standard deviation of all normal P-P intervals(SDNN), the square root of the mean of the sum of the squares of differences between adjacent normal P-P intervals(RMS-SD) in Hwabyung group was lower than healthy controls, but not significant. 2. As for frequency domain analysis, In TP(logarithmic total power), In VLF(logarithmic very low frequency), and In LF(logarithmic low frequency )in Hwabyung group was significantly lower than healthy controls. Ln HF(logarithmic high frequency), LF/HF ratio in Hwabyung group was also lower but not significant. Conclusions : This study suggests tile activity and imbalance of cardiac autonomous nervous system in Hwabyung patient is significantly lower than healthy individuals.

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Longitudinal Analysis of Body Weight and Feed Intake in Selection Lines for Residual Feed Intake in Pigs

  • Cai, W.;Wu, H.;Dekkers, J.C.M.
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.1
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    • pp.17-27
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    • 2011
  • A selection experiment for reduced residual feed intake (RFI) in Yorkshire pigs consisted of a line selected for lower RFI (LRFI) and a random control line (CTRL). Longitudinal measurements of daily feed intake (DFI) and body weight (BW) from generation 5 of this experiment were used. The objectives of this study were to evaluate the use of random regression (RR) and nonlinear mixed models to predict DFI and BW for individual pigs, accounting for the substantial missing information that characterizes these data, and to evaluate the effect of selection for RFI on BW and DFI curves. Forty RR models with different-order polynomials of age as fixed and random effects, and with homogeneous or heterogeneous residual variance by month of age, were fitted for both DFI and BW. Based on predicted residual sum of squares (PRESS) and residual diagnostics, the quadratic polynomial RR model was identified to be best, but with heterogeneous residual variance for DFI and homogeneous residual variance for BW. Compared to the simple quadratic and linear regression models for individual pigs, these RR models decreased PRESS by 1% and 2% for DFI and by 42% and 36% for BW on boars and gilts, respectively. Given the same number of random effects as the polynomial RR models, i.e., two for BW and one for DFI, the non-linear Gompertz model predicted better than the polynomial RR models but not as good as higher order polynomial RR models. After five generations of selection for reduced RFI, the LRFI line had a lower population curve for DFI and BW than the CTRL line, especially towards the end of the growth period.

THE DECISION OF OPTIMUM BASIS FUNCTION IN IMAGE CLASSIFICATION BASED ON WAVELET TRANSFORM

  • Yoo, Hee-Young;Lee, Ki-Won;Jin, Hong-Sung;Kwon, Byung-Doo
    • Proceedings of the KSRS Conference
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    • 2008.10a
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    • pp.169-172
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    • 2008
  • Land-use or land-cover classification of satellite images is one of the important tasks in remote sensing application and many researchers have been tried to enhance classification accuracy. Previous studies show that the classification technique based on wavelet transform is more effective than that of traditional techniques based on original pixel values, especially in complicated imagery. Various wavelets can be used in wavelet transform. Wavelets are used as basis functions in representing other functions, like sinusoidal function in Fourier analysis. In these days, some basis functions such as Haar, Daubechies, Coiflets and Symlets are mainly used in 2D image processing. Selecting adequate wavelet is very important because different results could be obtained according to the type of basis function in classification. However, it is not easy to choose the basis function which is effective to improve classification accuracy. In this study, we computed the wavelet coefficients of satellite image using 10 different basis functions, and then classified test image. After evaluating classification results, we tried to ascertain which basis function is the most effective for image classification. We also tried to see if the optimum basis function is decided by energy parameter before classifying the image using all basis function. The energy parameter of signal is the sum of the squares of wavelet coefficients. The energy parameter is calculated by sub-bands after the wavelet decomposition and the energy parameter of each sub-band can be a favorable feature of texture. The decision of optimum basis function using energy parameter in the wavelet based image classification is expected to be helpful for saving time and improving classification accuracy effectively.

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Statistical Evaluation of Sigmoidal and First-Order Kinetic Equations for Simulating Methane Production from Solid Wastes (폐기물로부터 메탄발생량 예측을 위한 Sigmoidal 식과 1차 반응식의 통계학적 평가)

  • Lee, Nam-Hoon;Park, Jin-Kyu;Jeong, Sae-Rom;Kang, Jeong-Hee;Kim, Kyung
    • Journal of the Korea Organic Resources Recycling Association
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    • v.21 no.2
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    • pp.88-96
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    • 2013
  • The objective of this research was to evaluate the suitability of sigmoidal and firstorder kinetic equations for simulating the methane production from solid wastes. The sigmoidal kinetic equations used were modified Gompertz and Logistic equations. Statistical criteria used to evaluate equation performance were analysis of goodness-of-fit (Residual sum of squares, Root mean squared error and Akaike's Information Criterion). Akaike's Information Criterion (AIC) was employed to compare goodness-of-fit of equations with same and different numbers of parameters. RSS and RMSE were decreased for first-order kinetic equation with lag-phase time, compared to the first-order kinetic equation without lag-phase time. However, first-order kinetic equations had relatively higher AIC than the sigmoidal kinetic equations. It seemed that the sigmoidal kinetic equations had better goodness-of-fit than the first-order kinetic equations in order to simulate the methane production.

A Boundary-layer Stress Analysis of Laminated Composite Beams via a Computational Asymptotic Method and Papkovich-Fadle Eigenvector (전산점근해석기법과 고유벡터를 이용한 복합재료 보의 경계층 응력 해석)

  • Sin-Ho Kim;Jun-Sik Kim
    • Journal of the Computational Structural Engineering Institute of Korea
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    • v.37 no.1
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    • pp.41-47
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    • 2024
  • This paper utilizes computational asymptotic analysis to compute the boundary layer solution for composite beams and validates the findings through a comparison with ANSYS results. The boundary layer solution, presented as a sum of the interior solution and pure boundary layer effects, necessitates a mathematically rigorous formalization for both interior and boundary layer aspects. Computational asymptotic analysis emerges as a robust technique for addressing such problems. However, the challenge lies in connecting the boundary layer and interior solutions. In this study, we systematically separate the principles of virtual work and the principles of Saint-Venant to tackle internal and boundary layer issues. The boundary layer solution is articulated by calculating the Papkovich-Fadle eigenfunctions, representing them as linear combinations of real and imaginary vectors. To address warping functions in the interior solutions, we employed a least squares method. The computed solutions exhibit excellent agreement with 2D finite element analysis results, both quantitatively and qualitatively. This validates the effectiveness and accuracy of the proposed approach in capturing the behavior of composite beams.

Comparison of various structural damage tracking techniques based on experimental data

  • Huang, Hongwei;Yang, Jann N.;Zhou, Li
    • Smart Structures and Systems
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    • v.6 no.9
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    • pp.1057-1077
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    • 2010
  • An early detection of structural damages is critical for the decision making of repair and replacement maintenance in order to guarantee a specified structural reliability. Consequently, the structural damage detection, based on vibration data measured from the structural health monitoring (SHM) system, has received considerable attention recently. The traditional time-domain analysis techniques, such as the least square estimation (LSE) method and the extended Kalman filter (EKF) approach, require that all the external excitations (inputs) be available, which may not be the case for some SHM systems. Recently, these two approaches have been extended to cover the general case where some of the external excitations (inputs) are not measured, referred to as the adaptive LSE with unknown inputs (ALSE-UI) and the adaptive EKF with unknown inputs (AEKF-UI). Also, new analysis methods, referred to as the adaptive sequential non-linear least-square estimation with unknown inputs and unknown outputs (ASNLSE-UI-UO) and the adaptive quadratic sum-squares error with unknown inputs (AQSSE-UI), have been proposed for the damage tracking of structures when some of the acceleration responses are not measured and the external excitations are not available. In this paper, these newly proposed analysis methods will be compared in terms of accuracy, convergence and efficiency, for damage identification of structures based on experimental data obtained through a series of laboratory tests using a scaled 3-story building model with white noise excitations. The capability of the ALSE-UI, AEKF-UI, ASNLSE-UI-UO and AQSSE-UI approaches in tracking the structural damages will be demonstrated and compared.

Evaluation of the Highway Traffic Safety Exposure Measures (도로교통안전도 비교평가지수 산정연구)

  • Kim, Ki Yong;Kim, Won Chul;Chang, Myungsoon
    • Journal of Korean Society of Transportation
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    • v.31 no.5
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    • pp.26-36
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    • 2013
  • Highway traffic safety evaluation of area on the basis of the accident rate has a limitation, thus its result is dependent on the exposure variables. It works an obstacle to decision making for effective budget execution. In this paper, we developed a methodology of taking simultaneously macroscopic exposure indicators into account in evaluating the safety using least squares method. The weight of exposure indicators to make up of highway traffic safety evaluation index is that accident rate per population, accident rate per registration vehicle and accident rate per length of road is 0.29, 0.52 and 0.19 respectively and calculated the highway traffic safety index of total local governments in Korea. The methodology to calculate highway traffic safety evaluation index proposed in this paper can be utilized in executing the traffic safety policies to increase the efficiency of investment about traffic safety budget.

Firework Plot as a Graphical Exploratory Data Analysis Tool to Evaluate the Impact of Outliers in a Mixture Experiment (혼합물 실험에서 특이값의 영향을 평가하기 위한 그래픽 탐색적 자료분석 도구로서의 불꽃그림)

  • Jang, Dae-Heung;Ahn, SoJin;Kim, Youngil
    • The Korean Journal of Applied Statistics
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    • v.27 no.4
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    • pp.629-643
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    • 2014
  • It is common to check the validity of an assumed model with the heavy use of diagnostics tools when conducting data analysis with regression techniques; however, outliers and influential data points often distort the regression output in undesired manner. Jang and Anderson-Cook (2013) proposed a graphical method called a firework plot for exploratory analysis that could visualize the trace of the impact of possible outlying and/or influential data points on individual regression coefficients and the overall residual sum of squares(SSE) measure. They developed 3-D plot as well as pair-wise plot for the appropriate measures of interest. In this paper, the approach was extended further to tell the strength of their approach; in addition, a more meaningful interpretation was possible by adding a measure not mentioned in their paper. This approach was applied to the mixture experiment because we felt that a detailed analysis of statistical measure sensitivity is required in a small experiment.