• Korean Journal of Microbiology
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• v.39 no.4
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• pp.207-215
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• 2003

Gene structure prediction, which is to predict protein coding regions in a given nucleotide sequence, is the most important process in annotating genes and greatly affects gene analysis and genome annotation. As eukaryotic genes have more complicated stuructures in DNA sequences than those of prokaryotic genes, analysis programs for eukaryotic gene structure prediction have more diverse and more complicated computational models. We have developed EGSP, a eukaryotic gene structure program, using duration hidden markov model. The program consists of two major processes, one of which is a training process to produce parameter values from training data sets and the other of which is to predict protein coding regions based on the parameter values. The program predicts multiple genes rather than a single gene from a DNA sequence. A few computational models were implemented to detect signal pattern and their scanning efficiency was tested. Prediction performance was calculated and was compared with those of a few commonly used programs, GenScan, GeneID and Morgan based on a few criteria. The results show that the program can be practically used as a stand-alone program and a module in a system. For gene prediction of eukaryotic microbial genomes, training and prediction analysis was done with Saccharomyces chromosomes and the result shows the program is currently practically applicable to real eukaryotic microbial genomes.

• Journal of Korean Society of Forest Science
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• v.85 no.1
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• pp.34-43
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• 1996

We investigated the vegetation structure, and effects of canopy degree(gap or purlieu to 25%, 50%, 75%, over 75%) of the overstory on seedling regeneration and survivorship, and sapling density, growth and growth type of Abies koreana in subalpine of Mt. Chiri. The stem density in Abies koreana stand was higher in middle story than upper story, individual trees in upper story occupied larger area and were more apart, resulted in uniform distribution. The regeneration and survivorship of seedlings and saplings were best in 25% of crown closure, in order of 50%, gap, but lowest in over 75% of crown closure. The annual growth rate and recent 5 years growth rate of saplings were highest in gap or purlieu and getting lower toward gradually higher coverage of overstory. And 10- to 20-Year-old saplings were mainly regenerated in stands with lower density(I or II), but most of 20 to 30 years old saplings were growing in stands with higher density (III or IV). The number of "A" type saplings grown normally in gap or purlieu was gradually decreased in stand with higher density but the number of "D" or "E" types of which growth was supressed or prohibited by the high density was abruptly increased. Saplings normally growing in the gap and purlieu showed the panicle type, but those grown under dense crown were greatly suppressed and showed the umbellate type.

• Proceedings of the Korean Institute of Navigation and Port Research Conference
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• v.1
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• pp.495-500
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• 2006

Satellite systems for objects positioning appeared indispensable for performing basic tasks of maritime navigation. Navigation, understood as safe and effective conducting a vehicle from one point to another, within a specific physical-geographical environment. [Kopacz, $Urba{\acute{n}}ski$, 1998]. However, the systems have not solved the problem of accessibility to reliable and highly accurate information about a position of an object, especially if surveyed toward on-shore navigational signs or in sea depth. And it's of considerable significance for many navigational tasks, carried out within the frameworks of special works performance and submarine navigation. In addition, positioning precisely the objects other than vessels, while executing hydrographical works, is not always possible with a use of any satellite system. Difficulties with GPS application show up also while positioning such off-lying dangers as wrecks, underwater and aquatic rocks also other naturaland artificial obstacles. It is caused by impossibility of surveyors approaching directly any such object while its positioning. Moreover, determination of vessels positions mutually (mutual geometrical relations) by teams carrying out one common tasks at sea, demands applying the navigational techniques other than the satellite ones. Vessels'staying precisely on specified positions is of special importance in, among the others, the cases as follows: - surveying vessels while carrying out bathymetric works, wire dragging; - special tasks watercraft in course of carrying out scientific research, sea bottom exploration etc. The problems are essential for maritime economy and the Country defence readiness. Resolving them requires applying not only the satellite navigation methods, but also the terrestrial ones. The condition for implementation of the geo-navigation methods is at present the methods development both: in aspects of their techniques and technologies as well as survey data evaluation. Now, the classical geo-navigation comprises procedures, which meet out-of-date accuracy standards. To enable meeting the present-day requirements, the methods should refer to well-recognised and still developed methods of contemporary geodesy. Moreover, in a time of computerization and automation of calculating, it is feasible to create also such software, which could be applied in the integrated navigational systems, allowing carrying out navigation, provided with combinatory systems as well as with the new positioning methods. Whereas, as regards data evaluation, there should be applied the most advanced achievements in that subject; first of all the newest, although theoretically well-recognised estimation methods, including estimation [Hampel et al. 1986; $Wi{\acute{s}}niewski$ 2005; Yang 1997; Yang et al. 1999]. Such approach to the problem consisting in positioning a vehicle in motion and solid objects under observation enables an opportunity of creating dynamic and interactive navigational structures. The main subject of the theoretical suggested in this paper is the Interactive Navigational Structure. In this paper, the Structure will stand for the existing navigational signs systems, any observed solid objects and also vehicles, carrying out navigation (submarines inclusive), which, owing to mutual dependencies, (geometrical and physical) allow to determine coordinates of this new Structure's elements and to correct the already known coordinates of other elements.

• Journal of Forest and Environmental Science
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• v.33 no.3
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• pp.202-225
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• 2017

Non Timber Forest Products (NTFPs) has gained a lot of significance over the years as a means of income generation. Forests are playing a vital role in the supply of these products, however, due to their continuous extraction, the population of many species might have depleted. Very little information is known about community structure and population status of NTFPs. No specific studies have been made to find out the occurrence, availability of species and population status in the forests, supplying the resources. The present study has been carried out in community forests of the naturally occurring NTFPs in the temperate forest of the Ziro valley of Arunachal Pradesh. The main aim is to determine community structure, species composition and population status of NTFPs. Three forest stands viz., Nyilii, Dura and Gyachi were selected which are used by the Apatani tribe for extraction of the NTFPs. For evaluation of species composition and community characteristics, the sampling of the vegetation was done using the quadrat method. A total 137 species representing 68 families and 116 genera were recorded. Herbs represent the maximum diversity with 71 species followed by 35 shrub species and 31 tree species. The families Asteraceae and Rosaceaeae exhibited maximum representation followed by Urticaceae. The species under Fagaceae, Lauraceae, Rosaceae and Rutaceae were found to be important NTFP yielding species. Highest species richness was recorded in Nyilii having 124 species, while lowest in Dura with 102 species. Density of tree, shrub and herb ranged between 376 to $456\;individuals\;ha^{-1}$, 2848 to $3696\;individuals\;ha^{-1}$ and 31.44 to $36.64\;individuals\;m^{-2}$, respectively. The total basal area was found to be highest ($51.64m^2\;ha^{-1}$) in Dura followed by Nyilii ($25.32m^2\;ha^{-1}$) and lowest in Gyachi ($22.82m^2\;ha^{-1}$). In all the three study stands the species diversity indices showed the trend, herbs > shrubs > trees while the evenness index showed the trend as shrubs > herbs > trees. The overall species similarity index was highest (82.35%) between Dura and Gyachi. About 80% of the total recorded species showed clumped distribution while, no regular distribution was shown by any species. The three selected stands harbor about 50 important NTFP yielding species which are being used commonly by the Apatani people in their day to day life. Among the three study sites, overall diversity of NTFP was found highest in the Nyilii stand while the density of population was found better in Dura and Gyachi stands. The population of many species was found to be low due to continue harvesting without any sustainable management by the communities. All the selected forest stands have the potentiality to grow the high value NTFP yielding species and if managed properly, they can support the livelihood and economy of the local communities.

• Journal of Korean Society of Forest Science
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• v.35 no.1
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• pp.9-14
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• 1977

The productive structure and the productivity of ${\times}$Populus albaglandulosa plantations, where are middle parts of the Korean peninsula, were studied by means of stratifying clip technique and of allometry. The densities of stands in the sample areas were 693 trees/ha in 6 year-old plantation and 527 or 625 trees/ha in 9 year-old one. The photosynthetic part of the productive structure was not shown normal conical form but layering. So this was efficient to transmit solar radiation into the stand floor. The standing crop of the terrestrial parts of 6 year-old plantation was 18.11 ton/ha and that of 9 year-old one 38.8 to 47.3 ton/ha. The wood volume to trunk to 6 year-old was $31.3m^3/ha$ and that of 9 year-old was 68.8 to $83.9m^3/ha$. The annual net production of 6 year-old plantation was 4.8 ton/ha/year and that of 9 year-old one was 10.0 to 11.7 ton/ha/year and its wood volume of trunks was 17.9 to $21.1m^3/ha/year$. In the 9 year-old plantation the standing crop or the annual net production was different between two sample areas. This seemed that the cause was not due to chemical character but to physical character of soil.

• Journal of Korean Society of Forest Science
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• v.79 no.3
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• pp.245-254
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• 1990

This study was carried out to analysis the structure of forest vegetation at the southern and northern slopes of Mt. Kum in Namhae. The results obtained were summarized as follows : The upper layer of south slope at the altitude of 100m was only distributed at Pinus thunbergii and Pinus densiflora. According to increase of altitude, the importance value of Pinus thunbergii was more decreased. In the upper layer of north slope, importance value of Pinus thunbergii was very high in the altitude of 100m, and was very low in the 200m. And also, importance value of Quercus variabilis and Steuortia koreana was high from 200m to 600m. The number of individuals of Pinus thunbergii and Pinus densiflora in the south slope were more increased than those of the north slope. The distributional class of D.B.H, showed an equal tendency in south and north slope, especially-Quercus variabilis and Quercus serrata had a good growth in north slope. The stand density in the upper lacer was high in south slope but mean acreage and mean distance of individual trees showed low. The species diversity indices were relatively lower in south slope than in north slope, and the maximum of species diversity showed slightly high in south slope. The evenness showed lower in south slope than in north slope relatively. By the cluster analysis used the similarity.

• Journal of Korean Society of Forest Science
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• v.105 no.3
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• pp.309-314
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• 2016

A locally adapted plant population under harsh environmental changes might survive for a long generation through maintaining proper level of genetic diversity. When it happens losing the genetic diversity too much fast, the population could be declining and probably become extinct. An isolated small population of Populus davidiana was investigated to study out the genetic diversity and the fine-scale spatial genetic structure. The estimated number of adult trees in the population of Mt. Worak, South Korea, was 350 in the total area of $14,000m^2$. The number of adults in a study plot ($70m{\times}70m$) was 123. The average age was 16-year-old and a 32-year-old tree was the oldest. The distribution of individuals was slightly aggregated in the plot. Sixty-one among the 123 individuals were randomly sampled to estimate genetic variation using AFLP markers. One hundred fifty-one (77%) of total 196 amplicons were polymorphic from six AFLP primer combinations. The average number of loci per primer combination was 32.7 (S.D.=7.2). Expected heterozygosity ($H_e$) and Shannon's diversity index (S.I.) were 0.154 and 0.254, respectively. These values were extremely lower than those of other P. davidiana populations in South Korea. Genetic patchiness was showed within 21 meters by spatial autocorrelation analysis and the isolated small size of population might be mainly attributed to the formation of such small patch size.

• Journal of Korean Society of Forest Science
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• v.90 no.3
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• pp.249-256
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• 2001

The objective of this study was to analyze characters of the vegetation structure, vegetation-environment relationships of Kyeryongsan forest community. Fifty plots were sampled in the valley forest of Donghaksa, Gabsa, Sanghasinri and Shinwonsa regions in Kyeryongsan. Field survey was carried out in August of 1999 to examine a vegetation type and measure a diameter. The classification by TWINSPAN, the DCCA ordination, and structure of stand were used to analyze data. The results of this study are as follows : 1. With the classification by TWINSPAN, the community was categorized into four groups, such as Carpinus laxiflora, Quercus variabilis-Quercus serrata, Zelkova serrata-Celtis jessoensis and Carpinus cordata communities. 2. The dominant species in Carpinus laxiflora community were Carpinus laxiflora, Quercus variabilis, Quercus serrata, Pinus densiflora and Styrax japonica. The dominant species in Quercus variabilis-Quercus serrata community were Quercus variabilis, Quercus serrata, Styrax japonica, Castanea crenata and Platycarya strobilacea. The dominant species in Zelkova serrata-Celtic jessoensis community were Quercus serrata, Castanea crenata, Lindera erythrocarpa, Zelkova serrata and Styrax japonica. The dominant species in Carpinus cordata community were Carpinus cordata, Carpinus laxiflora, Sapium japonicum, Cornus controversa and Zelkova serrata. 3. The results of the correlation between Kyeryongsan valley forest community and environmental factors by DCCA ordination method are as follows; The Carpinus laxiflora community was found in low elevation and steep slope area. The Quercus variabilis-Quercus serrata community was found in low elevation and lower slope area. The Zelkova serrata-Celtis jessoensis community was found in high elevation and lower slope area. The Carpinus cordata community was found in high elevation and midium slope area.

• Journal of Korean Society of Forest Science
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• v.98 no.3
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• pp.339-350
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• 2009

This study was carried out to investigate distributional condition of rare plants and useful plant resources, and to verify distributional patterns of understory vegetation associated with the upper layer's vegetation structure. Total 59 families, 160 genera, 218 kinds of vascular plants were identified at the study site including 6 rare plants designated by Korea Forest Service (Lloydia triflora Bak., Trillium kamtschaticum Pall., Lilium distichum Nakai, Anemone koraiensis Nakai, Iris odaesanensis Y.N. Lee, Viola diamantica Nakai). Twenty three species of useful plant resources were also identified at the site; 8 of them showed clustered distributions and the others were prone to scatter. Actual vegetation of this study area consisted of one natural community dominated by Quercus mongolica Fisch. and three disturbed communities of Larix kaempferi (Lamb.) Carriere, Abies holophylla Max. and/or a herbaceous vegetation resulting from forest removal and strong wind of mountain top. This classification was strongly supported by cluster analysis based on the surveyed plot data. Distributional patterns of understory vegetation within forest stand were somewhat related to overstory vegetation structure, but showed a different tendency according to site condition, species composition, and competitive pressure among understory vegetation. Therefore, in order to protect the important understory components as forest genetic resources, forest treatments such as density control of overstory should be implanted based on understanding of impact on understory's dynamics and growing condition.

• Journal of Korean Society of Forest Science
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• v.113 no.1
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• pp.51-65
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• 2024

Phyto-sociological methods were used in this study to assess the vegetation structure of a forest stand at Mt. Goehwa in Sejong-Si with the aim of providing vegetation information for urban forest utilization and management plans. The actual forest vegetation was classified into two types of community groups (Quercus serrata-Lindera obtusiloba and Coreopsis lanceolata community groups) at the highest hierarchical level. The Q. serrata-L. obtusiloba community group was classified into six units, which included artificial forest and natural forest vegetation. Artificial forests were classified into three communities (Pinus rigida, Castanea crenata, and Robinia pseudoacacia), whereas natural forests were classified into three communities (Quercus variabilis, Quercus acutissimaa, and Pinus densiflora). The Coreopsis lanceolata community group, which exhibited vegetative characteristics of urban forest edge areas, was categorized into four units. The urban forest edges were classified into four communities (Indigofera bungeana, Lespedeza bicolor, Amorpha fruticosa, and Lespedeza cuneata). Accordingly, the vegetation structure of Mt. Goehwa was categorized into 10 vegetation unit systems. An importance value analysis showed the highest importance value for C. crenata at 6.7%, followed by P. rigida at 6.4%, and R. pseudoacacia at 6.3%, indicating that the ecological impact of plantation species can be significant on Mt. Goehwa. A community coefficient of similarity analysis revealed that the artificial and natural forests had similar species compositions; however, both forests differed from the urban forest edge. This variation was further confirmed by Detrended correspondence analysis(DCA), with similar results. Canonical correspondence analysis(CCA) showed that the artificial forest and natural forest community types were positively correlated with altitude, bare rock, and the present species. By contrast, the urban forest edge community types were negatively correlated with these factors.