• Journal of Microbiology
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• 제43권2호
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• pp.158-165
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• 2005

Psilocybe fagicola comprises a complex of more than eight species, six of them in Mexico, and all of them possessing a long pseudorhiza, a characteristic not listed by Heim and Cailleux in 1959 in the original description of the type species, but described by Guzman in 1978 and 1983. The description of Psilocybe fagicola s.s. is here emended to include the length of the cheilocystidia of(6-) 12-20 (-30) llm, as well as the absence or scarcity of pleurocystidia. Psilocybe xalapensis and P. wassoniorum are considered to be synonymous with P. fagicola s.s. However, Psilocybe banderillensis and P. herrerae from Mexico, P. columbiana from Colombia, and P. keralensis from India are considered to be valid species within this complex. Moreover, P. novoxalapensis and P. teofilae, both from Mexico, are described as new species. Length of spores, presence or absence of pleurocystidia and their variations, and type of cheilocystidia constitute the principal defining characteristics of the species. Setaceous hyphae at the base of the stipe, as well as caulocystidia, lack taxonomic value, as do other morphological characteristics, including pileipellis and subpileipellis. A key to the eight considered species is also presented within the paper.

• 한국균학회소식:학술대회논문집
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• 한국균학회 2016년도 춘계학술대회 및 임시총회
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• pp.33-33
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• 2016

Mycotoxins are toxic secondary metabolites produced by fungi. They can be present in where agricultural-based commodities are contaminated with toxigenic fungi. These mycotoxins cause various toxicoses in human and livestock when consumed. Small grains including corn, barley, rice or wheat are frequently contaminated with mycotoxins due to infection mainly by toxigenic Fusarium species and/or under environment favorable to fungal growth. One of the most well-known Fusarium toxin groups in cereals is trichothecenes consisting of many toxic compounds. Deoxynivalenol (DON), nivalenol (NIV), T-2 toxin, and various derivatives belong to this group. Zearalenone and fumonisin (FB) are also frequently produced by many species of the same genus. In order to monitor Korean cereals for contamination with Fusarium and other mycotoxigenic fungal species as well, barley, corn, maize, rice grains, and soybean were collected from fields at harvest or during storage for several years. The fungal colonies outgrown from the grain samples were identified based on morphological and molecular characteristics. Trichothecene chemotypes of Fusarium species or presence of FB biosynthetic gene were determined using respective diagnostic PCR to predict possible toxin production. Heavy grain contamination with fungi was detected in barley, rice and wheat. Predominant fungal genus of barley and wheat was Alternaria (up to 90%) while that of rice was Fusarium (~40%). Epicoccum also appeared frequently in barley, rice and wheat. While frequency of Fusarium species in barley and wheat was less than 20%, the genus mainly consisted of Fusarium graminearum species complex (FGSC) which known to be head blight pathogen and mycotoxin producer. Fusarium composition of rice was more diverse as FGSC, Fusarium incarnatum-equiseti species complex (FIESC), and Fusarium fujikuroi species complex (FFSC) appeared all at considerable frequencies. Prevalent fungal species of corn was FFSC (~50%), followed by FGSC (<30%). Most of FFSC isolates of corn tested appeared to be FB producer. In corn, Fusarium graminearum and DON chemotype dominate within FGSC, which was different from other cereals. Soybeans were contaminated with fungi less than other crops and Cercospora, Cladosporium, Alternaria, Fusarium etc. were detected at low frequencies (up to 14%). Other toxigenic species such as Aspergillus and Penicillium were irregularly detected at very low frequencies. Multi-year survey of small grains revealed dominant fungal species of Korea (barley, rice and wheat) is Fusarium asiaticum having NIV chemotype.

• Journal of Microbiology
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• 제44권3호
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• pp.263-268
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• 2006

Pleurotus ostreatus is a widely cultivated white-rot fungus. Owing to its considerable enzymatic versatility p. ostreatus has become the focus of increasing attention for its possible utility in biobleaching and bioremediation applications. Interactions between microorganisms can be an important factor in those processes. In this study, we describe the presence of a bacterial species associated with P. ostreatus strain G2. This bacterial species grew slowly (approximately 30 days) in the liquid and semi-solid media tested. When p. ostreatus was inoculated in solid media containing Tween 80 or Tween 20, bacterial microcolonies were detected proximal to the fungal colonies, and the relevant bacterium was identified via the analysis of a partial 16S rDNA sequence; it was determined to belong to the Burkholderia cepacia complex, but was not closely related to other fungus-isolated Burkholderiaceae. New specific primers were designed, and confirmed the presence of in vitro P. ostreatus cultures. This is the first time that a bacterial species belonging to the B. cepacia complex has been found associated with P. ostreatus.

• 한국산림과학회지
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• 제85권1호
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• pp.1-14
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• 1996

대기오염물질(大氣汚染物質)이 사상공단(沙上工團) 주변(周邊)의 해송림(海松林)에 미치는 영향(影響)을 알아보기 위하여 공단주변(工團周邊) 해송림(海松林)의 식생구조(植生構造)를 분석(分析)한 결과(結果)는 다음과 같다. 1. 공단주변산림(工團周邊山林)의 상층(上層)은 주로 해송림(海松林)으로 구성(構成)되었으며, 사방오리나무와 아까시나무가 많은 조사지(調査地)에서 나타나고 있었고, 중층(中層)에서는 해송(海松) 다음으로 아까시나무, 개옻나무, 산검양옻나무, 때죽나무가 주로 나타났으며, 하층(下層)에서는 해송(海松)의 출현(出現)은 적었으며, 대기오염(大氣汚染)에 대하여 내성(耐性)이 강한 아까시나무, 졸참나무, 개옻나무, 산철쭉 등(等)이 전반적(全般的)으로 출현(出現)되고 있었다. 특히 아까시나무는 공단주변(工團周邊)에서, 진달래는 공단(工團)으로 부터 먼 곳에서 중요치율(重要値率)이 높게 나타났다. 2. 공단(工團) 주변(周邊)의 각(各) 조사지(調査地)에서 목본류(木本類)의 종수(種數)와 종다양도지수(種多樣度指數)와 유사도지수(類似度指數)는 대조구(對照區)와 차이(差異)를 나타내지 않았다. 3. 초본류(草本類)에서는 대기오염(大氣汚染)에 대한 내성(耐性)이 강(强)한 주름조개풀이 전반적(全般的)으로 출현(出現)되고 있었으며, 참억새, 실새풀, 계요등, 기름새, 산거울 등(等)도 전반적(全般的)으로 고르게 나타나며, 이들은 적산우점도(積算優占度)의 값도 높았다. 그러나 참취, 분취, 미역취, 꿀풀 등(等)은 공단(工團) 주변(周邊)에서 거의 출현(出現)되지 않았다. 4. 초본류(草本類)의 종수(種數)는 대조구(對照區)의 20종(種)에 비(比)하여 공단주변(工團周邊)에서 10종이하(種以下)로 감소(減少)되었고, 종다양도(種多樣度)에서도 공단주변(工團周邊) 지역(地域)이 감소(減少) 되었으며, 유사도지수(類似度指數) 역시 대조구(對照區)와 비교(比較)하면 아주 낮게 나타나고 있어 대기오염물질(大氣汚染物質)에 의한 초본류(草本類)의 종구성상태(種構成狀態)가 변화(變化)되고 있음을 알 수 있었다. 이상(以上)의 결과(結果)에서 보면 사상공단주변(沙上工團周邊)의 해송림(海松林)은 대기오염(大氣汚染)에 강한 수종(樹種)의 분포(分布)가 많았다. 식생구조(植生構造)의 변화(變化)는 목본류(木本類)에서는 아직 크게 나타나지 않았다. 그러나 초본류(草本類)에서는 종수(種數)와 종다양도지수(種多樣度指數)의 변화(變化)가 나타나고 있었다. 따라서 목본류(木本類)에서도 앞으로 식생구조(植生構造)의 변화(變化)가 예상(豫想)되고 있다.

• The Korean Journal of Ecology
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• 제21권4호
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• pp.337-344
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• 1998

To select tolerant species among the Korean major woody plants for restoring disturbed ecosystems by air and soil pollution, we transplanted the seedlings of 56 species in control and polluted sites within Yeocheon industrial complex area, and compared their aboveground growth characteristics such as total branch length, total leaf weight, and maximum photozynthetic rate. Tolerant species growting better in polluted site than in control site was Quercus variabilis, Pinus thunbergii, Q. aliena, P. densiflora, Styrax japonica, Alnus firma, Celtis sinensis, Elaeagnus umbellata, Q. serrata, japonica, Sorbus alnifolia, and Q. acutissimia in local tree occuring within polluted area group (80%), Ailanthus altissima in street tree group (20%), Populus tomentiglandulosa and A. hirsuta var. sibirica in fast growing tree group (50%), Acer ginala and Abies holophylla in late successional tree group (20%), Betulla platyphylla var. japonica, Acer truncatum, A. palmatum, Syringa dilatata, and Rosa multifora in garden tree group (38%), and Q. rubura, and Robinia pseudoacacia in foreign restoring tree group (20%), respectively. The remaining plant species, 37 species (57% of total species), were classified into sensitive species to pollution. Those tolerant species can be utilized for restoration of the degraded ecosystem in this polluted area.

• Mycobiology
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• 제46권3호
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• pp.177-184
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• 2018

The genus Trichoderma (Hypocreaceae, Ascomycota) consists of globally distributed fungi. Among them, T. harzianum, one of the most commonly collected Trichoderma species, had been known as a polyphyletic or aggregate species. However, a total of 19 species were determined from the polyphyletic groups of T. harzianum. Thus, we explored Korean "T. harzianum" specimens that were collected in 2013-2014. These specimens were re-examined based on a recent study with translate elongation factor 1-alpha ($EF1{\alpha}$) sequences to reveal cryptic Trichoderma species in Korea. As a result, four different species, T. afroharzianum, T. atrobruneum, T. pyramidale, and T. harzianum, were identified. Except T. harzianum, the other three species have not been reported in Korea. In this work, we describe these species and provide figures.

• Animal cells and systems
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• 제3권1호
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• pp.79-87
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• 1999

Mitochondrial DNA (mtDNA) from 54 specimens of the blue mussel (Mytilus edulis) species complex sampled from the southern coast of Korea was assayed for polymorphism with a portion of the COIII gene (336 bp). Fifteen haplotypes were found. PAUP, one-step networks, and PHYLIP analyses revealed the presence of two clearly differentiated mitochondrial clades (termed clades B and E), separated by 3.6% of minimum sequence divergence. The distribution pattern of the species appears to be consistent with category II of the phylogeographic pattern sensu (Avise et al., 1987): the presence of two discontinuous and distinct mtDNA genotypes in the same geographic region. This unusual mitochondrial polymorphism was explained by the presence of the Mediterranean species, M. galloprovincialis, possessing mtDNA of both M. galloprovincialis and M. edulis.

• Parasites, Hosts and Diseases
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• 제48권3호
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• pp.231-236
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• 2010

Anopheles fluviatilis James (Oiptera: Culicidae) is one of the known malaria vectors in south and southeastern Iran. Earlier ITS2 sequences analysis of specimens from Iran demonstrated only a single genotype that was identical to species Y in India, which is also the same as species T. We identified 2 haplotypes in the An. fluviatilis populations of Iran based on differences in nucleotide sequences of D3 domain of the 28S locus of ribosomal DNA (rDNA). Comparison of sequence data from 44 Iranian specimens with those publicly available in the Genbank database showed that all of the 288-D3 sequences from Kazeroun and Khesht regions in Fars Province were identical to the database entry representing species U in India. In other regions, all the individuals showed heterozygosity at the single nucleotide position, which identifies species U and T. It is argued that the 2 species may co-occur in some regions and hybridize; however, the heterozygosity in the 288-D3 locus was not reflected in ITS2 sequences and this locus for all individuals was identical to species T. This study shows that in a newly diverged species, like members of An. fluviatilis complex, a single molecular marker may not be sufficiently discriminatory to identify all the taxa over a vast geographical area. In addition, other molecular markers may provide more reliable information for species discrimination.

• 식물분류학회지
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• 제48권3호
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• pp.206-217
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• 2018

The nucleotide sequences of the chloroplast rbcL, matK, and psbA-trnH and nuclear internal transcribed spacer (ITS) regions were determined from all species of Viburnum in Korea with multiple accessions to reconstruct the phylogeny and to evaluate the utility of the DNA sequences as DNA barcodes. The results of phylogenetic analyses of the cpDNA and ITS data are consistent with the findings of previous studies of Viburnum. Four morphologically closely related species, V. dilatatum, V. erosum, V. japonicum, and V. wrightii, were included in a strongly supported sister clade of V. koreanum and V. opulus. Viburnum odoratissimum is suggested to be sister to the V. dilatatum/V. koreanum clade in the cpDNA data, while V. odoratissimum is a sister to V. furcatum in the ITS data. Viburnum burejaeticum and V. carlesii are strongly supported as monophyletic. Our analyses of DNA barcode regions from multiple accessions of the species of Viburnum in Korea confirm that six out of ten species in Korea can be discriminated at the species level. The V. dilatatum complex can be separated from the remaining species according to molecular data, but the resolution power to differentiate a species within the complex is weak. This study suggests that regional DNA barcodes are useful for molecular species identification in the case of Viburnum when flowering or fruiting materials are not available.

• Parasites, Hosts and Diseases
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• 제40권1호
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• pp.25-31
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• 2002

We describe a riboprinting scheme for identification of unknown Acanthamoeba isolates at the species level. It involved the use of PCR-RFLP of small subunit ribosomal RNA gene (riboprint) of 24 reference strains by 4 kinds of restriction enzymes. Seven strains in morphological group I and III were identified at species level with their unique sizes of PCR product and riboprint type by Rsa 1. Unique RFCP of 17 strains in group II by Dde I. Taq I and Hae III were classified into: (1) four taxa that were identifiable at the species level. (2) a subgroup of 4 taxa and a pair of 2 taxi that were identical with each other. and (3) a species complex of 7 taxa assigned to A. castellanii complex that were closely related. These results were consistent with those obtained by 18s rDNA sequence analysis. This approach provides an alternative to the rDNA sequencing for rapid identification of a new clinical isolate or a large number of environmental isolates of Acanthamoeba.