• Title/Summary/Keyword: soil strain

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Isolation and identification of $\beta$-glucan degrading enzyme producing bacterium using coloured $\beta$-glucan (색소에 접합된 $\beta$-glucan을 이용한 $\beta$-glucan 분해효소 생산 균주의 분리 및 동정)

  • 양진오;정안식;이성택
    • Korean Journal of Microbiology
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    • v.25 no.4
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    • pp.339-345
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    • 1987
  • A bacterium K-4-3, producing $\beta$-glucan hydrolyzing enzyme, was isolated from soil and identified to be Bacillus subtilis by its morpholohical and physiological characteristics. $\beta$-glucan was coloured using cibacron blue 3G-A and cross linded by the addition of 1, 4-butanedioldiglycidyl ether. This substrate was used for the isolation of $\beta$-glucanase producing microorganism. The $\beta$-glucan hydrolyzing enzyme actibity from isolated K-4-3 strain was also measured using the modified substrate. Bacillus subtilis K-4-3 produced the highest extracellular $\beta$-glucan hydrolyzing activity in the basal medium containing $\beta$-glucan as a carbon source, peptone and tryptone as a nitrogen source, and magnesium sulfate as an inorganic salt. The optimum temperature and initial pH for $\beta$-glucanase production by Bacillus subtilis K-4-3 were $37^{\circ}C$ and pH6. The highest enzyme activity was obtained at the culture age of 54 hrs with rotary shaking at $37^{\circ}C$. The crude enzyme showed the highest activity at pH 7.5-8.0 and $65^{\circ}C$.

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Taxonomical studies of Korean aspergilli (한국산 Aspergilli에 관한 분류학적 연구)

  • 김상재
    • Korean Journal of Microbiology
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    • v.9 no.1
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    • pp.1-26
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    • 1971
  • Intensive taxonomical studies of the Aspergilli have long been made. Altogether 132 species and 18 varieties are recognized in the book "The Genus Aspergillus" written by Raper and Fennell (1965), in contrast to 77 species, 8 varieties and 4 mutations in " A Manual of Aspergilli" written 20 years earlier by Thom and Raper (1945). Classification of the Asperilli by Thom and Raper (1945) and by Raper and Fenell (1965). Classification of the Aspergilli by Thom and Raper (1945) and by Rapher and Fenell (1965) have been based mainly upon morphological and cultural detail both physiological and biochemical activities. In Korean there are many kinds of foods fermented natrually without the employment of selected microorganisms, and there are, of course, many different microorganisms serving in the fermentation fermented foods than other countries, the distribution and biological properties of the Asperigilli, in Korea are more variable. Taxonominical studies with 36 strains of Asperilli were based upon the examinations of morphological, cultural, and physiological characteristics. nineteen strains indigenous to Korea were selected from a lot of strains which had been isolated from meju and kokja and one strain from soil. They were identified according to the group key of Raper and Fennell. Ten strains were donated by Dr.Hesseltine of the Northern Utilization Research and Development Division in the U.S.A. From the Asp. japonicus supplied by Dr.Hesseltine, a white mutant was isolated and also studied. Two strains were donated by Dr. Murakami of the Research Institute of Brewing in Japan, and four strains came from Korean industrial companies.ndustrial companies.

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Characteristics of Several Bacterial Isolates Capable of Degrading Chloroaliphatic Compounds via Hydrolytic Dechlorination

  • Song, Ji-Sook;Lee, Dong-Hun;Lee, Kyoung;Kim, Chi-Kyung
    • Journal of Microbiology
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    • v.41 no.4
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    • pp.277-283
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    • 2003
  • Haloaliphatic hydrocarbons have been widely used as solvents and ingredients of pesticides and herbicides. However, when these compounds contaminate the environment, they can be very hazardous to animals and humans because of their potential toxicity and carcinogenicity. Therefore, lots of studies have been made for microbial degradation of those pollutant chemicals. In this study, 11 bacterial strains capable of degrading 1,2-dichloroethane (1,2-DCA), 2-chloropropionic acid (2-CPA), 2,3-dichloropropionic acid (2,3-DCPA), and 2-monochloroacetic acid (2-MCA) by hydrolytic dechlorination under aerobic conditions were isolated from wastewaters and rice paddy soil samples. Their morphological and biochemical characteristics and their degradation capabilities of haloaliphatic hydrocarbons were examined. On the basis of the 16S rDNA sequences, 8 different kinds of microbial species, including Pseudomonas plecoglossicida, Xanthobacter flavus, Ralstonia eutropha, were identified. All of the isolated strains can degrade MCA. In particular, strains UE-2 and UE-15 degraded 1,2-DCA, and strain CA-11 degraded 2,3-DCPA, which are hardly degraded by other strains.

Genetic Toxicity Test of 1,2-Dibromoethane by Ames, Micronucleus, Comet Assays and Microarray Analysis

  • Kim, Ki-Y.;Kim, Ji-H.;Kwon, Kyoung-J.;Go, Seo-Y.;Min, Kyung-N.;Lee, Woo-S.;Park, Sue-N.;Shee, Yhun-Y.
    • Biomolecules & Therapeutics
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    • v.14 no.4
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    • pp.246-252
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    • 2006
  • 1,2-Dibromoethane(DBE) has been widely used as a soil fumigant, an additive to leaded gasoline and an industrial solvent. In this study, we have carried out in vitro genetic toxicity test of 1,2-dibromoethane and microarray analysis of differentially expressed genes in response to 1,2-dibromoethane. 1,2-Dibromoethane showed mutations in base substitution strain TA1535 both with and without exogenous metabolic activation. 1,2-Dibromoethane showed mutations in frame shift TA98 both with and without exogenous metabolic activation. 1,2-Dibromoethane showed DNA damage based on single cell gel/comet assay in L5178Y cells both with and without exogenous metabolic activation. 1,2-Dibromoethane increased micronuclei in CRO cells both with and without exogenous metabolic activation. Microarray analysis of gene expression profiles in L5178Y cells in response to 1,2-dibromoethane selected differentially expressed 241 genes that would be candidate biomarkers of genetic toxic action of 1,2-dibromoethane.

Production of Inulin Fructotransferase(depolymerizing) from Flavobacterium sp. LC-413

  • Cho, Chul-Man;Lim, Young-Soon;Kang, Soo-Kyung;Jang, Kyung-Lib;Lee, Tae-Ho
    • Preventive Nutrition and Food Science
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    • v.1 no.1
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    • pp.121-126
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    • 1996
  • A bacterial strain LC-413, producing extracellular inulin fructotransferase which converts inulin into di-D-fructofuranose dianhydride(DFAIII) and amount of oilgosaccharides, was isolated from soil and pre-sumed as Flavobacteium sp. LC-413. The enzyme production was induced by inulin as carbon source and enhanced by the addition of 0.3% malt extract and 0.2% {TEX}$NaNO_{3}${/TEX} as nitrogen source. The enzyme activity in the culture supernatant reached at the maximum, 78.6units/ml, after 11 hours of cultivation in the medium composition of 1.5% inulin, 0.2% {TEX}$NaNO_{3}${/TEX}, 0.05% {TEX}$K_{2}${/TEX}{TEX}$HPO_{4}${/TEX}, 0.05% {TEX}$MgSO_{4}${/TEX}.7{TEX}$H_{2}${/TEX}O, 0.05% KCI, a trace amount of {TEX}$FeSO_{4}${/TEX}.7{TEX}$H_{2}${/TEX}O, and 0.3% malt ext. at 3$0^{\circ}C$. The oilgosaccharide produced by enzyme reaction from inulin was identified as DFA III by and {TEX}${13}^C${/TEX}-NMR spectrosocpy.

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Isolation of Anguillosporal, a Potent Inhibitor of Phospholipase C from Fungi Isolate No. 51005 (곰팡이 분리주 No. 51005로부터 포스포리파제 C 저해물질 앙길로스포랄의 분리)

  • Oh, Won-Keun;Lee, Hyun-Sun;Ahn, Soon-Cheol;Ko, Hack-Ryong;Kim, Bo-Yeon;Min, Tae-Ick;Ahn, Jong-Seog
    • YAKHAK HOEJI
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    • v.41 no.4
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    • pp.433-438
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    • 1997
  • MT 51005 as a potent inhibitor of phospholipase C(PLC) was purified from the culture broth of a fungal strain No. 51005 isolated from soil. It was identified as a benzaldehyde d erivative, anguillosporal. by the physico-chemical properties and spectroscopic data. Anguillosporal showed the inhibitory activity against purified PLC with an $IC_{50}\;of\;13{\mu}g/ml$. And it also inhibited the formation of inositol phosphates($IP_t$) in platelet-derived growth factor(PDGF)-stimulated $NIH3T3{\gamma}1$ cells with an $IC_{50}\;of\;0.8{\mu}g/ml$.

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Isolation of Insoluble Phosphate-Solubilizing Bacteria and Optimum Condition for Solubilization (인광석 가용화 세균의 분리 및 가용화 최적조건)

  • Kim, Hyoung-Jong;Jeong, Hun-Seob;Kim, Jae-Ho;Lee, Jong-Soo
    • The Journal of Natural Sciences
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    • v.12 no.1
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    • pp.69-79
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    • 2002
  • 850 strains of phosphate-solubilizing bacteria were isolated from soil of Chung-nam and Daejeon region using 0.5% calcium phosphate containing medium. The HS-2 strain with the highest rock phosphate-solubilizing activity was selected and identified as Azotobacter sp. HS-2 based on the microbiological characteristics. The optimum culture temperature and initial pH of medium for solubilization of rock phosphate were $30^{\circ}C$ and pH 6.0-7.0, respectively. Addition of oxalic acid(0.5M) into the PDB-rock phosphate medium increased 50% solubilization of rock phosphate.

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Purification and Identification of pretense from Bacillus sp. HB-5 and its application of cosmetic product (Bacillus sp. HB-5균주가 생산하는 단백질 분해 효소의 분리. 정제 및 화장품에의 응용)

  • 이범천;윤은정;이동환;표형배
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.26 no.1
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    • pp.107-124
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    • 2000
  • A bacterial strain No. HB-5, which was capable of producing a pretense in the culture conditions, was isolated from the soil . The pretense was purified from cultural filtrate of Bacillus sp. HB-5 by membrane ultrafiltration and DEAE- cellulose chromatography, gel filtration on Sephadex G-100. The molecular weight was estimated to be 60k4a. The optimal pH and temperature for the activity of the purified pretense pH were 11 and 5$0^{\circ}C$ , respectively. The enzyme was stable within a pH range 8-12 and up to 6$0^{\circ}C$ . The enzyme activity was highly inhibited by PMSF at 1mM. The proteolytic actions of pretense and papain on human epidermis keratins which are major protein impurities on the skin, were compared. The bacterial pretense degraded more effectively than papain. Product containing 2% protease exhibited 21% increase on the skin coloration index. These results suggest that cosmetic product containing pretense produced by Bacillus sp. HB-5 could remove the adherent keratin layer and then make a softer skin.

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Simplification analysis of suction pile using two dimensions finite element modeling

  • Hendriyawan, Hendriyawan;Primananda, M. Abby;Puspita, Anisa Dwi;Guo, Chao;Hamdhan, Indra Noer;Tahir, M.M.;Pham, Binh Thai;Mu'azu, M.A.;Khorami, Majid
    • Geomechanics and Engineering
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    • v.17 no.4
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    • pp.317-322
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    • 2019
  • This paper presents the results of parametric analyses to compute the axial capacity of a suction pile using 2D and 3D finite element approaches. The study is intended to simplify the process of analyzing suction piles from 3D to 2D model. The research focuses on obtaining the coefficient to be applied into the 2D model in order to obtain results that are as close as possible to the 3D model. Two 2D models were used in the analysis, namely the plane strain and axisymmetric models. The analyses were performed using two actual offshore soil data of the North and West Java Indonesia. The study reveals that the simplification of model through 2D Finite Element is achievable by applying the appropriate coefficient to the stiffness parameters. The results show that the simplified model of the 2D FEA provides more conservative results (with the difference between 2% to 7%) than the 3D FEA.

Complete genome sequence of drought tolerant plant growth-promoting rhizobacterium Glutamicibacter halophytocola DR408 (내건성 식물생장 촉진 균주인 Glutamicibacter halophytocola DR408의 유전체 분석)

  • Nishu, Susmita Das;Hyun, Hye Rim;Lee, Tae Kwon
    • Korean Journal of Microbiology
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    • v.55 no.3
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    • pp.300-302
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    • 2019
  • Glutamicibacter halophytocola DR408 isolated from the rhizospheric soil of soybean plant at Jecheon showed drought tolerance and plant growth promotion capacity. The complete genome of strain DR408 comprises 3,770,186 bp, 60.2% GC-content, which include 3,352 protein-coding genes, 64 tRNAs, 19 rRNA, and 3 ncRNA. The genome analysis revealed gene clusters encoding osmolyte synthesis and plant growth promotion enzymes, which are known to contribute to improve drought tolerance of the plant.