• Title/Summary/Keyword: soil strain

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Purification and Characterization of Soymilk-clotting Enzyme Produced by Penicillium sp.

  • Koo, Sung-Keun;Lee, Sang-Ok;Lee, Tae-Ho
    • Journal of Microbiology and Biotechnology
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    • v.2 no.1
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    • pp.14-20
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    • 1992
  • Some microorganisms isolated from soil, including some bacteria and fungi, were found to secrete an extracellular soymilk-clotting enzyme. Among them, an isolated fungus showed the highest soymilk-clotting activity and the strain was assigned to genus Penicillium based on its cultural and morphological characteristics, and designated as Penicillium sp. L-151K. Soymilk-clotting enzymes A and B produced by Penicillium sp. L-151K were purified by ammonium sulfate precipitation and chromatographies on Sephadex G-25, CM-Sephadex, Sephadex G-100 and phenyl-Toyopearl gel. The two purified enzymes A and B were found to be homogeneous by polyacrylamide gel electrophoresis at pH 9.5. The molecular weights of enzyme A and B were 24, 000 and 40, 000, respectively, by gel filtration on Sephadex G-100. Enzymes A and B coagulated soymilk optimally at $60^\circ{C}$ and were stable up to $50^\circ{C}$. Both enzymes were most active at pH 5.8 for soymilk coagulation, and were stable with approximately 80% of original activity from pH 3.0 to 5.0. Each enzyme was an acidic protease with an optimum pH of 3.0 for casein digestion. The soymilk-clotting efficiency of these enzymes was improved with $CaCl_2\;or\;MgCl_2$ when making soymilk-curd.

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Purification and the Stoichiometry of Nucleoside Oxidase from Flavobacterium meningosepticum (Flavobacterium meningosepticum이 생산하는 Nucleoside Oxidase의 정제 및 Stoichiometry)

  • 최양문;조홍연;양한철
    • Microbiology and Biotechnology Letters
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    • v.21 no.1
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    • pp.23-29
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    • 1993
  • A bacterial strain. producing a nucleoside oxidase was isolated from soil and identified as Flavobacterium meningosepticum by its taxonomical characteristics. The enzyme has been purified ISO-fold to electrophoretic homogeniety in an overall yield of 18% from the cell free extract of the producer. The enzyme catalyzed oxidation of only nucleosides related to both purine and pyrimidine with very high substrate specificity. The nucleoside oxidase was proved to be a noble enzyme by stoichiometry that 1 mol adenosine as a substrate was especially oxidized via adenosine 5' -aldehyde to 1 mol adenosine 5' -carboxylic acid with the formation of 2 mol $H_20_2$

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Characterization of a Nitrogen Fixing Bacteria Mycobacterium hominis sp. AKC-10 Isolated from the Wetland (습지에서 분리한 질소고정 세균인 Mycobacterium hominis sp. AKC-10의 특성)

  • Hong, Sun-Hwa;Shin, Ki-Chul;Lee, Eun-Young
    • Microbiology and Biotechnology Letters
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    • v.38 no.3
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    • pp.302-307
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    • 2010
  • Nitrogen is an element need to grow plants growth. Plants take up nitrogen in the form of nitrate or ammonium. Most of plants absorb nitrogen source as fertilizers. But from 50 to 70% of fertilizers applied were washed away. This study was conducted to isolate free-living nitrogen fixing bacteria from reed and to examine its beneficial traits for developing sustainable biofertilizers. Enriched consortium obtained from a reed in Ansan was developed for the fixing of nitrogen. Nitrogen fixing bacteria isolated from an enriched culture in Congo Red Medium was analyzed by 16s rDNA sequencing. AKC-10 was isolated and shown to have excellent nitrogen fixing ability. The optimum conditions of nitrogen fixing ability were $25^{\circ}C$ ($237.50{\pm}39.65\;nmole{\cdot}mg-protein^{-1}{\cdot}h^{-1}$ and pH 7 ($168.335{\pm}12.84$ nmole/hr mg-protein). It was identified as Microbacterium hominis [(AKC-10 (similarity : 99%)]. This strain was had to IAA (indole-3-acetic acid) productivity and ACC(1-aminocyclopropane-1-carboxylic acid) deaminase activity. Therefore, Microbacterium hominis AKC-10 stimulated plant development in the soil, enhancing the efficiency of remediation.

Screening and Identification of a Streptomyces platensis YK-2, a New Transglutaminase Producer

  • Yeo, Soo-Hwan;Yoon, Jung-Hoon;Lee, Dong-Gun;Kim, Hyun-Soo
    • Journal of Microbiology and Biotechnology
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    • v.19 no.6
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    • pp.588-595
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    • 2009
  • A bacterial strain, YK-2, was isolated as a producer of trans glutaminase from a forest soil sample of Daegu, Korea. The isolate showed a G+C content of 72.7 mol%, contained meso-$A_2pm$ as the cell-wall amino acid, and possessed menaquinone MK-9 ($H_6$) and menaquinone MK-9 ($H_8$) at a ratio of 6:4. The chemotaxonomic analysis, as well as phylogenetic analysis based on the 16S rDNA sequence, identified the isolate as a member of Streptomyces platensis. For transglutaminase production, the optimum medium composition was determined to be 2% glucose, 1% polypeptone, 1% soy tone, and 0.1% $MnCl_2$. The transglutaminase was stable within the pH range of 5.0-9.0 and $30-45^{\circ}C$, and the optimum pH and temperature were pH 8.0 and $45^{\circ}C$, respectively, without any requirement for $Ca^{2+}$.

Nutritional and Cultural characterizations of microorganism capable of producing antagonistic activity against Streptococcus mutans (S. mutans에 항균력(抗菌力)을 나타내는 균주(菌株)의 배양학적(培養學的) 성질(性質))

  • Park, Myung-Ho
    • Journal of Technologic Dentistry
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    • v.21 no.1
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    • pp.139-144
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    • 1999
  • The optimum culture conditions for an antibiotics from Actinomyces sp. were investigated. The optimum composition of medium for antibiotics production was 1% glucose, 1% soybean meal, 0.5% NaCl, 0.1% $CaCO_2$, and the optimum initial pH was 7.0. And the antibiotics showed highest activity when the strain isolated from soil was aerobically cultivated at $28^{\circ}C$ for 72hours under the optimum conditions. A production of the antibiotics from Actinomyces sp. begins at the 36th hours and then reached the maximum at the stationary phase developed at the 72th hours under the optimum conditions.

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A Study on the Data Classification in Engineering Stage of Pipeline Project in Extreme Cold Weather (극한지 파이프라인 프로젝트 설계단계에서의 데이터 분류에 관한 연구)

  • Kim, Chang-Han;Won, Seo-Kyung;Lee, Jun-Bok;Han, Choong-Hee
    • Proceedings of the Korean Institute of Building Construction Conference
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    • 2014.11a
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    • pp.214-215
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    • 2014
  • Recently, Russia decided to export an annual 7.5 million tons of natural gas to Korea over 30 years from 2015, as also deal with China, planed to build a pipeline connecting Siberia to Shandong Peninsula about 4000km. Risk management is required depending on the project in extreme cold weather, because it is concerned about the behavior of the seasonal changes in soil temperature and the strain of pipe according to the long-distance pipeline construction. The plan of data management shall be prepared in parallel for a sophisticated risk management, because a data is massive scale and it is generated/accumulated in real time. Therefore, this research is aimed to classify a data items in engineering stage of pipeline by previous studies for managing a generated data depending on the detail works in extreme cold weather. We expect to be provided the foundation of an efficient classification system of a generated data from the pipeline project life cycle.

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Incorporating uplift in the analysis of shallowly embedded pipelines

  • Tian, Yinghui;Cassidy, Mark J.
    • Structural Engineering and Mechanics
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    • v.40 no.1
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    • pp.29-48
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    • 2011
  • Under large storm loads sections of a long pipeline on the seabed can be uplifted. Numerically this loss of contact is extremely difficult to simulate, but accounting for uplift and any subsequent recontact behaviour is a critical component in pipeline on-bottom stability analysis. A simple method numerically accounting for this uplift and reattachment, while utilising efficient force-resultant models, is provided in this paper. While force-resultant models use a plasticity framework to directly relate the resultant forces on a segment of pipe to the corresponding displacement, their historical development has concentrated on precisely modelling increasing capacity with penetration. In this paper, the emphasis is placed on the description of loss of penetration during uplifting, modelled by 'strain-softening' of the force-resultant yield surface. The proposed method employs uplift and reattachment criteria to determine the pipe uplift and recontact. The pipe node is allowed to become free, and therefore, the resistance to the applied hydrodynamic loads to be redistributed along the pipeline. Without these criteria, a localised failure will be produced and the numerical program will terminate due to singular stiffness matrix. The proposed approach is verified with geotechnical centrifuge results. To further demonstrate the practicability of the proposed method, a computational example of a 1245 m long pipeline subjected to a large storm in conditions typical of offshore North-West Australia is discussed.

Production of High Viscous Hyaluronic Acid Complex from Klebsiella sp. L-10 (Klebsiella sp. L-10에 의한 고점성 히아루론산 복합체의 생산)

  • Lee, Hyang-Suk;Choe, Yeong-Jun;Lee, Jong-Su
    • The Journal of Natural Sciences
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    • v.7
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    • pp.59-65
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    • 1995
  • A bacterium which produce hyaluronic acid complex was isolated from soil, and identified as Klebsiella sp. L-10. The maximal hyaluronic acid complex production was obtained when the strain was cultured at $37^{\circ}C$ for 18hrs with shaking in the optimal medium containing 0.1% yeast ext., 3% tryptone, 5% glucose, 10mM $K_2HPO_4$and $KH_2PO_4$, respectively and initial pH6.5 and the final hyaluronic acid complex production under the above condition was 1,400mg per liter of cultures.

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Generalized Rayleigh wave propagation in a covered half-space with liquid upper layer

  • Negin, Masoud
    • Structural Engineering and Mechanics
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    • v.56 no.3
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    • pp.491-506
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    • 2015
  • Propagation of the generalized Rayleigh waves in an initially stressed elastic half-space covered by an elastic layer is investigated. It is assumed that the initial stresses are caused by the uniformly distributed normal compressional forces acting on the face surface of the covering layer. Two different cases where the compressional forces are "dead" and "follower" forces are considered. Three-dimensional linearized theory of elastic waves in initially stressed bodies in plane-strain state is employed and the elasticity relations of the materials of the constituents are described through the Murnaghan potential where the influence of the third order elastic constants is taken into consideration. The dispersion equation is derived and an algorithm is developed for numerical solution to this equation. Numerical results for the dispersion of the generalized Rayleigh waves on the influence of the initial stresses and on the influence of the character of the external compressional forces are presented and discussed. These investigations provide some theoretical foundations for study of the near-surface waves propagating in layered mechanical systems with a liquid upper layer, study of the structure of the soil of the bottom of the oceans or of the seas and study of the behavior of seismic surface waves propagating under the bottom of the oceans.

Genetic and Phenotypic Diversity of (R/S)-Mecoprop [2-(2-Methyl-4- Chlorophenoxy)Propionic Acid]-Degrading Bacteria Isolated from Soils

  • Lim, Jong-Sung;Jung, Mee-Kum;Kim, Mi-Soon;Ahn, Jae-Hyung;Ka, Jong-Ok
    • Journal of Microbiology
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    • v.42 no.2
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    • pp.87-93
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    • 2004
  • Twelve mecoprop-degrading bacteria were isolated from soil samples, and their genetic and phenotypic characteristics were investigated. Analysis of 16S rDNA sequences indicated that the isolates were related to members of the genus Sphingomonas. Ten different chromosomal DNA patterns were obtained by polymerase-chain-reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences from the 12 isolates. The isolates were found to be able to utilize the chiral herbicide meco-prop as a sole source of carbon and energy. While seven of the isolates were able to degrade both (R)-and (S)-mecoprop, four isolates exhibited enantioselective degradation of the (S)-type and one isolate could degrade only the (R)-enantiomer. All of the isolates were observed to possess plasmid DNAs. When certain plasmids were removed from isolates MPll, MP15, and MP23, those strains could no longer degrade mecoprop. This compelling result suggests that plasmid DNAs, in this case, conferred the ability to degrade the herbicide. The isolates MP13, MP15, and MP24 were identified as the same strain; however, they exhibited different plasmid profiles. This indicates that these isolates acquired dif-ferent mecoprop-degradative plasmids in different soils through natural gene transfer.