• Title/Summary/Keyword: soil strain

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Biodegradation of Biphenyl by Sphingbium yanoikuyae BK-10 (Biphenyl의 Sphingobium yanoikuyae BK-10에 의한 분해 특성)

  • Lee Jung-Bok;Kim Dong-Geol;Choi Chung-Sig;Sohn Ho-Yong;Kim Jang-Eok;Kwon Gi-Seok
    • Microbiology and Biotechnology Letters
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    • v.34 no.2
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    • pp.174-179
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    • 2006
  • Bacterium capable of using biphenyl as a sole source of carbon and energy were isolated from soil, and based on the results of 16S rDNA sequence, strain BK10 identified as a Sphingobium yanoiktiyae. The optimum cultural conditions were as follows; $NH_4NO_3$ 1g, $K_2HPO_4$ 1g, $MgSO_4{\cdot}7H_2O$ 0.5g, $CaCO_3$ 0.2 g per 1 liter of distilled water. The Sphingobium yanoikuyae BK10 strain was completely utilized biphenyl in mineral salt media containing biphenyl at concentration 500 $\mu$g/ml of biphenyl as a sole carbon and energy source within 48 hours. Optimumal pH and temperature for biphenyl degradation and cell growth of strains were 6.0$\sim$8.0 and 20$\sim$50$^{\circ}C$, respectively. Especially, at 30$^{\circ}C$, cell-growth were higher than other temperature. Cell grown on biphenyl has been shown to have a higher removal rate for biphenyl than grown on sucrose. This study shows that Sphingobium yanoikuyae BK10 strain had a high biodegradation capability of biphenyl and can be simulate a candidate compounds the bioremediation of PCBs (Polychlorinated biphenyl) contaminant soil and water.

Statistical Optimization for Biodegradation of 2,4-Dichlorophenoxyacetic Acid by Soil Isolated Bacterium (토양 분리 박테리아에 의한 2,4-Dichlorophenoxyacetic산의 분해 최적화)

  • Kim, Byunghoon;Myunghee Han;Sungyong Cho;Sungjin Ahn;Lim, Sung-Paal;Sunkyun Yoo
    • Microbiology and Biotechnology Letters
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    • v.31 no.1
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    • pp.83-89
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    • 2003
  • 2,4-Dichlorophenoxyacetic acid (2,4-D) as a widely used herbicide has caused serious environmental problems because of its difficult decomposition in nature. We isolated the strain capable of metabolizing 2,4-D as sole carbon and energy source by an enrichment culture technique from the 2,4-D contaminated soil collected at orchard in Gwangju, Korea. This strain was identified tentatively as Aeromonas sp. NOH2. With this strain, we established the response surface methodology (Box-Behnken Design) to optimize the principle parameters for maximizing biodegradation of 2,4-D such as culture pH, temperature, and nutrient concentration in liquid batch culture. The ranges of parameters were obtained from preliminary works done at our laboratory and chosen as 5.5, 6.5, and 7.5 for pH, 25, 30, and $35^{\circ}C$ for temperature, and 5, 20, and 35 g/1 nutrient concentration. Initial concentration of 2,4-D was 500 ppm and nutrient source was tryptic soy broth. The experimental data were significantly fitted to a second order polynomial equation using multiple regression. The most important parameter influencing 2,4-D degradation and biomass production was nutrient concentration. For 2,4-D degradation, the optimum values of pH and temperature, and nutrient concentration were obtained at pH (6.5), temperature (31.8 to $32.1^{\circ}C$), and nutrient concentration (29.6 to 30.1.0 g/1).

Studies on Conditions of the Gluconic Acid Production by a Mold isolated from the Soil of Seoul Area (Aspergillus SP. 균주에 의한 Gluconic Acid 생산조건에 관한 연구)

  • 양호석;김동훈;양한철
    • Microbiology and Biotechnology Letters
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    • v.8 no.2
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    • pp.93-102
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    • 1980
  • Fungi which were capable of producing gluconic acid were isolated from soil and tree leave samples, which had been collected in Seoul ana its vicinity. Among the 19 strains isolated, a strain named arbitrarily KUF-O4 was selected as a test strain chiefty because of its efficiency in gluconic acid production. The strain was identified as an Aspergillus sp. through its morphological properties. Optimum conditions for the gluconic acid production of KUF-O4 were investigated. The results obtained are as follows. 1. An incubation period of at least 30 hours was required for a good yield of gluconic acid. 2. A medium containing 10% glucose needed at least 3 % CaCo$_3$to maintain the optimum pH for the production of gluconic acid during fermentation. 3. As a carbon source, glucose was the most effective one among the carbon sources tested. 4. As a nitrogen source, an ammonium salt was more effective than any other form of nitrogen compounds. 5. As mineral source, a small amount of both KH$_2$PO$_4$and MgSO$_4$was found to be necessary to increase the efficiency of the gluconic acid production.

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The Study on the Development and the Applicability of Consolidation Analysis Program Considering the Creep Strain (Creep 변형을 고려한 압밀해석 프로그램의 개발과 적용성 분석)

  • Kim, Su-Sam;Jeong, Seung-Yong;An, Sang-Ro
    • Geotechnical Engineering
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    • v.14 no.5
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    • pp.129-142
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    • 1998
  • This research is focused on the inducement of the constitutive equation considering the creep strain component and on the development of a finite element method program. The purpose of this research was to contribute to the design of construction structures or to the construction management in soft clay ground through predicting the long-term strain of construction structures reasonably bused on the above program. Modified Cam Clay model was adopted to describe the elastic-plastic behavior of clayey soil. And in the calculation of the creep sprain, the secondary coefficient of consolidation C. was applied for considering the volumetric creep element and the constants m, $\alpha$, A were rosed by the empirical creep equation proposed by Singh 8E Mitchell for considering the deviatoric creep element. To examine the reliability of the program which is developed in this study, the estimated values by this program were compared with the theoretical solution and the experimental results. And the applicability of the developed program was found to be reliable from the sensitive analysis of each parameters used in this study. According to the results obtained from the application of the program on the field measurement data, the estimated values by the program were found with be consistent with the actual values. And from the analysis of the displacement of embankments, the case of considering the creep behavior induced much fower errors than the case of neglecting it. But the results obtained from considering the volumetric creep behavior only were slightly underestimated the results from considering the deviator creep behavior showed the slightly overestimated values. Therefore, it remains the task of further studios to develop the laboratory test devices to obtain the reliable creep parameters, and to select the appropriate soil parameters, etc.

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Evaluation of Field Nonlinear Modulus of Subgrnde Soils Using Repetitive Static Plate Bearing Load Test (반복식 평판재하시험을 이용한 노상토의 현장 변형계수 평가)

  • Kim Dong-Soo;Seo Won-Seok;Kweon Gi-Chul
    • Journal of the Korean Geotechnical Society
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    • v.21 no.6
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    • pp.67-79
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    • 2005
  • The field plate load test has a good potential for determining modulus since it measures both plate pressure and settlement. Conventionally the modulus has been assumed to be a constant secant value defined from the settlement of the plate at a given load intensity. A constant modulus (modulus of subgrade reaction, k), however, may not be a representative value of subgrade soil under working load. Field strain(o. stress)-dependent modulus characteristics of subgrade soils, at relatively low to intermediate strains, are important in the pavement design. In this study, the field strain dependent moduli of subgrade soils were obtained using cyclic plate load test. Testing procedure and data reduction method are proposed. The field crosshole and laboratory resonant column tests were also performed to determine field nonlinear modulus at $0.001\%\;to\;0.1\%$ strains, and the modulus values and nonlinear trends are compared to those obtained by cyclic plate load tests. Both modulus values match relatively well when the different state of stress between two tests was considered, and the applicability of field cyclic plate load test for determining nonlinear modulus values of subgrade soils is verified.

Phytoextraction of Heavy Metals Induced by Bioaugmentation of a Phosphate Solubilizing Bacterium

  • Arunakumara, K.K.I.U.;Walpola, Buddhi Charana;Song, Jun-Seob;Shin, Min-Jung;Lee, Chan-Jung;Yoon, Min-Ho
    • Korean Journal of Environmental Agriculture
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    • v.33 no.3
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    • pp.220-230
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    • 2014
  • BACKGROUND: Excessive metals in the soil have become one of the most significant environmental problems. Phytoremediation has received considerable attention as a method for restoring the contaminated soils. The microbes having remarkable metal tolerance and plant growth-promoting abilities could also play a significant role in remediation of metal-contaminated soils, because bioaugmentation with such microbes could promote phytoextraction of metals. Therefore, the present study was focused on evaluating the phytoextraction of heavy metals (Co, Pb and Zn) in Helianthus annuus (sunflower) induced by bioaugmentation of a phosphate solubilizing bacterium. METHODS AND RESULTS: A phosphate solubilizing bacterium was isolated from metal-contaminated soils based on the greater halo size (>3 mm) with solid NBRIP agar medium containing 10 g glucose, 5 g $Ca_3(PO_4)_2$, 5 g $MgCl_2{\cdot}6H_2O$, 0.25 g $MgSO_4.7H_2O$, 0.2 g KCl, 0.1 g $(NH_4)_2SO_4$ in 1 L distilled water. Isolated bacterial strain was assessed for their resistance to heavy metals; $CoCl_2.6H_2O$, $2PbCO_3.Pb(OH)_2$, and $ZnCl_2$ at various concentrations ranging from $100-400{\mu}g/mL$ (Co, Pb and Zn) using the agar dilution method. A pot experiment was conducted with aqueous solutions of different heavy metals (Co, Pb and Zn) to assess the effect of bacterial strain on growth and metal uptake by Helianthus annuus (sunflower). The impact of bacterial inoculation on the mobility of metals in soil was investigated under laboratory conditions with 50 mL scaled polypropylene centrifuge tubes. The metal contents in the filtrate of plant extracts were determined using an atomic absorption spectrophotometer (Perkinelmer, Aanalyst 800, USA). CONCLUSION: Inoculation with Enterobacter ludwigii PSB 28 resulted in increased shoot and root biomass and enhanced accumulation of Co, Pb and Zn in Helianthus annuus plants. The strain was found to be capable of promoting metal translocation from the roots to the shoots of H. annuus. Therefore, Enterobacter ludwigii PSB 28 could be identified as an effective promoter of phytoextraction of Co, Pb and Zn from metal-contaminated soils.

Organic acid production and phosphate solubilization by Enterobacter intermedium 60-2G (Enterobacter intermedium 60- 2G의 유기산 생성과 불용성인의 가용화)

  • Kim, Kil-Yong;Hwangbo, Hoon;Kim, Yong-Woong;Kim, Hyo-Jeong;Park, Keun-Hyung;Kim, Young-Cheol;Seong, Ki-Young
    • Korean Journal of Soil Science and Fertilizer
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    • v.35 no.1
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    • pp.59-67
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    • 2002
  • A phosphate solubilizing bacterium. strain 60-2G, possessing a strong ability to solubilize insoluble phosphate was isolated from the rhizosphere of grass. On the basis of GC-FAME profile, carbon utilization pattern, and the DNA sequence of a conserved partial 16S rRNA gene, the 60-2G was identified as Enterobacter intermedium. The analysis by HPLC revealed that the strain 60-2G produced mainly gluconic and 2-ketogluconic acids with small amounts of lactic acid in broth culture medium containing hydroxyapatite. During the incubation period of the strain 60-2G in broth culture, pH of the medium decreased upto 3.8 while the soluble phosphate concentration increased. The reversed correlation between pH and soluble phosphate concentration indicated that the solubility of P was due to the produced organic acids. The sequence homology of the deduced amino acids suggested that E. intermedium 60-2G synthesized PQQ which is essential for the oxidation of glucose by glucose dehydrogenase.

Medium optimization for growth of Bacillus amyloliquefaciens ISP-5 strain and evaluation of plant growth promotion using lettuce (Bacillus amyloliquefaciens ISP-5 균주의 배지 최적화 및 상추를 이용한 식물 생장 촉진 평가)

  • Kang-Hyun Choi;Sun Il Seo;Haeseong Park;Ji-hwan Lim;Pyoung Il Kim
    • Journal of Plant Biotechnology
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    • v.49 no.4
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    • pp.356-361
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    • 2022
  • Bacillus sp. is a useful strain for agriculture because it promotes plant growth and controls plant pathogens through a variety of mechanisms. In this study, we obtained a microbial preparation with a high number of viable cells by culturing newly isolated soil bacteria on an optimized medium. Subsequently, we applied this preparation to lettuce to enhance its growth and yield. First, B. amyloliquefaciens ISP-5 was isolated from soil. Next, optimization of culture medium was carried out using 5 L scale fermenters. When culturing B. amyloliquefaciens ISP-5 on this optimized medium, the number of viable cells was approximately 1000 times higher than that obtained from culturing on the commercial medium. Afterwards, the plant growth promotion properties of the ISP-5 strain were evaluated using lettuce as a test plant. Foliar spray treatment of lettuce was carried out by inoculating half the standard concentration suspension (0.5 × 107 cfu/ml). As a result, leaf width increased by 8.6% and leaf length increased by 12.9% compared to the control group. Live weight also increased by 24.2% and dry weight by 23.9%. Considering the results from field test, B. amyloliquefaciens ISP-5 showed potential as a plant growth-promoting bacteria.

Degradation of the Herbicide, TOK(2,4-dichloro-4'-nitro diphenyl ether) in Soil (제초제(除草劑) TOK의 토양중(土壤中) 분해(分解))

  • Lee, Jae-Koo;Kim, Ki-Cheol;Kim, Chang-Han
    • Applied Biological Chemistry
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    • v.23 no.2
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    • pp.131-139
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    • 1980
  • TOK (2,4-Dichlolo-4'-nitrodiphenyl ether) was applied to two Korean soils possessing different physico-chemical properties at a certain concentration and incubated for a certain time under flooded conditions. The metabolites and the soil microorganisms involved in the degradation of TOK are studied. Chong Ju and Chung Ju soils treated with TOK at a concentration of 500 ppm and incubated for two, four, and six months at $30^{\circ}C$ yielded 4-chloro-4'-amino diphenyl ether, 2, 4-dichloro-4'-amino diphenyl ether(amino-TOK), N-[4'-(4-chloro-phenoxy)] phenyl acetamide, and N-[4'-(4-chloro-phenoxy)] phenyl formamide as the major metabolites. TOK underwent the reduction of nitrogroup to amino group, dechlorination, acetylation, and formylation. No cleavage at the ether linkage was recognized. TOK was more readily degraded in Chung Ju soil which is characterized by the higher pH (PH 6.43), clay loam in textural class, and the higher cation exchange capacity. The toxicity of TOK as a possible environmental contaminant is expected to be considerably reduced as a result of the above degradation Twelve strains of soil bacteria were isolated from the TOK-treated Chong Ju and Chung Ju soils. As a result of the incubation of TOK in pure cultures of the isolates, T-1-1 strain isolated from Chong Ju soil had almost no degradability, whereas T-2-3 strain turned out to be the most potent. The degradation of TOK by the isolates constituted mostly the reduction of the nitro group to amino group. The citrate buffer extract of Chung Ju soil reduced TOK more readily to amino-TOK than that of Chong Ju soil.

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A Study on the Shear Characteristics of the Decomposed Granite Soils Using Direct Shear Test (직접전단시험(直接剪斷試驗)에 의한 화강토(花崗土)의 전단특성(剪斷特性)에 관(關)한 연구(硏究))

  • Lee, Dal Won;Kang, Yea Mook;Cho, Seong Seup
    • Korean Journal of Agricultural Science
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    • v.13 no.2
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    • pp.227-242
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    • 1986
  • This paper describes the observed behavior in the direct shear test on decomposed granite soil having the complicate engineering properties at various different levels of factors. The objectives of this study were to investigate the characteristics of the decomposed granite soil under controlled various moisture content, dry density, strain rate and soaking which give influence to the shear strength. The results were summarized as follows; 1. The shear strength was decreased remarkably with the increasing of moisture contents of A and B soil were 5-10% and 15-20% respectively. 2. Cohesion and angle of internal friction were decreased with the increasing of moisture content and increased with the increasing of dry density. 3. The shear strength was increased with the increasing of normal stress and volume change was decreased on the whole. The shear strength was generally increased with the increasing of the strain rate. 4. As dry density increases, A-soil shows the progressive failure and the decrease of volume change while B-soil shows the initial failure and the increase of volume change. 5. The relationships between the soaked and unsoaked specimens were as follows ; ${\tau}_f=0.1009+1.026{{\tau}_f}^*$ (A-soil), ${\tau}_f=0.1586+0.8005{{\tau}_f}^*$ (B-soil) 6. Angle of internal friction of the direct shear test shows larger value than that of the triaxial compression test. All effective stress path was nearly similar.

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